Mercurial > repos > kkonganti > cfsan_cronology
diff 0.1.0/lib/help/kronaktimporttext.nf @ 0:c8597e9e1a97
"planemo upload"
author | kkonganti |
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date | Mon, 27 Nov 2023 12:37:44 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/0.1.0/lib/help/kronaktimporttext.nf Mon Nov 27 12:37:44 2023 -0500 @@ -0,0 +1,44 @@ +// Help text for ktImportText (krona) within CPIPES. + +def kronaktimporttextHelp(params) { + + Map tool = [:] + Map toolspecs = [:] + tool.text = [:] + tool.helpparams = [:] + + toolspecs = [ + 'krona_ktIT_run': [ + clihelp: 'Run the ktImportText (ktIT) from krona. Default: ' + + (params.krona_ktIT_run ?: false), + cliflag: null, + clivalue: null + ], + 'krona_ktIT_n': [ + clihelp: 'Name of the highest level. ' + + "Default: ${params.krona_ktIT_n}", + cliflag: '-n', + clivalue: (params.krona_ktIT_n ?: '') + ], + 'krona_ktIT_q': [ + clihelp: 'Input file(s) do not have a field for quantity. ' + + "Default: ${params.krona_ktIT_q}", + cliflag: '-q', + clivalue: (params.krona_ktIT_q ? ' ' : '') + ], + 'krona_ktIT_c': [ + clihelp: 'Combine data from each file, rather than creating separate datasets ' + + 'within the chart. ' + + "Default: ${params.krona_ktIT_c}", + cliflag: '-c', + clivalue: (params.krona_ktIT_c ? ' ' : '') + ] + ] + + toolspecs.each { + k, v -> tool.text['--' + k] = "${v.clihelp}" + tool.helpparams[k] = [ cliflag: "${v.cliflag}", clivalue: v.clivalue ] + } + + return tool +} \ No newline at end of file