--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/0.1.0/workflows/conf/process/cronology_db.process.config	Mon Nov 27 12:37:44 2023 -0500
@@ -0,0 +1,68 @@
+process {
+    if (params.dpubmlstpy_run) {
+        withName: 'DOWNLOAD_PUBMLST_SCHEME' {
+            ext.args = addParamsToSummary(
+                loadThisFunction("${params.toolshelp}${params.fs}dpubmlstpy.nf").dpubmlstpyHelp(params).helpparams
+            )
+        }
+    }
+
+    if (params.checkm2predict_run) {
+        withName: 'CHECKM2_PREDICT' {
+            ext.args = addParamsToSummary(
+                loadThisFunction("${params.toolshelp}${params.fs}checkm2predict.nf").checkm2predictHelp(params).helpparams
+            )
+        }
+    }
+
+    if (params.guncrun_run) {
+        withName: 'GUNC_RUN' {
+            ext.args = addParamsToSummary(
+                loadThisFunction("${params.toolshelp}${params.fs}guncrun.nf").guncrunHelp(params).helpparams
+            )
+        }
+    }
+
+    if (params.mlst_run) {
+        withName: 'MLST' {
+            ext.args = addParamsToSummary(
+                loadThisFunction("${params.toolshelp}${params.fs}mlst.nf").mlstHelp(params).helpparams
+            )
+        }
+    }
+
+    if (params.mashsketch_run) {
+        withName: 'MASH_SKETCH' {
+            ext.args = addParamsToSummary(
+                loadThisFunction("${params.toolshelp}${params.fs}mashsketch.nf").mashsketchHelp(params).helpparams
+            )
+        }
+    }
+}
+
+// Method to instantiate a new function parser
+// Need to refactor using ScriptParser... another day
+def loadThisFunction (func_file) {
+    GroovyShell grvy_sh = new GroovyShell()
+    def func = grvy_sh.parse(new File ( func_file ) )
+    return func
+}
+
+// Method to add relevant final parameters to summary log
+def addParamsToSummary(Map params_to_add = [:]) {
+
+    if (!params_to_add.isEmpty()) {
+        def not_null_params_to_add = params_to_add.findAll {
+            it.value.clivalue != null && 
+                it.value.clivalue != '[:]' &&
+                it.value.clivalue != ''
+        }
+
+        params.logtheseparams += not_null_params_to_add.keySet().toList()
+
+        return not_null_params_to_add.collect {
+            "${it.value.cliflag} ${it.value.clivalue.toString().replaceAll(/(?:^\s+|\s+$)/, '')}"
+        }.join(' ').trim()
+    }
+    return 1
+}
\ No newline at end of file