kkonganti@0: process QUAL_PASSED_GENOMES {
kkonganti@0:     tag "Consolidate"
kkonganti@0:     label "process_micro"
kkonganti@0: 
kkonganti@0:     module (params.enable_module ? "${params.swmodulepath}${params.fs}python${params.fs}3.8.1" : null)
kkonganti@0:     conda (params.enable_conda ? "conda-forge::python=3.10.4" : null)
kkonganti@0:     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
kkonganti@0:         'https://depot.galaxyproject.org/singularity/python:3.10.4' :
kkonganti@0:         'quay.io/biocontainers/python:3.10.4' }"
kkonganti@0: 
kkonganti@0:     input:
kkonganti@0:         path acc_passed_tool1
kkonganti@0:         path acc_passed_tool2
kkonganti@0: 
kkonganti@0:     output:
kkonganti@0:         path 'accs_passed.txt', emit: accs
kkonganti@0:         path 'versions.yml'   , emit: versions
kkonganti@0: 
kkonganti@0:     when:
kkonganti@0:         task.ext.when == null || task.ext.when
kkonganti@0: 
kkonganti@0:     script:
kkonganti@0:         def args = task.ext.args ?: ''
kkonganti@0:         def prefix = task.index ?: ''
kkonganti@0:         def output = 'accs_passed.txt'
kkonganti@0: 
kkonganti@0:         """
kkonganti@0:         qual_confirm.py \\
kkonganti@0:             -f1 $acc_passed_tool1  \\
kkonganti@0:             -f2 $acc_passed_tool2
kkonganti@0: 
kkonganti@0:         cat <<-END_VERSIONS >> versions.yml
kkonganti@0:             python: \$( python --version | sed 's/Python //g' )
kkonganti@0:         END_VERSIONS
kkonganti@0:         """
kkonganti@0: }