kkonganti@0: process RMLST_POST {
kkonganti@0:     tag "${meta.id}"
kkonganti@0:     label "process_pico"
kkonganti@0:     maxForks 3
kkonganti@0: 
kkonganti@0:     module (params.enable_module ? "${params.swmodulepath}${params.fs}python${params.fs}3.8.1" : null)
kkonganti@0:     conda (params.enable_conda ? "conda-forge::python=3.10 conda-forge::requests" : null)
kkonganti@0:     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
kkonganti@0:         'https://depot.galaxyproject.org/singularity/requests:2.26.0' :
kkonganti@0:         'quay.io/biocontainers/requests:2.26.0' }"
kkonganti@0: 
kkonganti@0:     input:
kkonganti@0:         tuple val(meta), path(genome)
kkonganti@0: 
kkonganti@0:     output:
kkonganti@0:         tuple val(meta), path('*.tsv')     , emit: tsv
kkonganti@0:         tuple val(meta), path('*.log.json'), emit: log
kkonganti@0:         path 'versions.yml'                , emit: versions
kkonganti@0: 
kkonganti@0:     when:
kkonganti@0:         task.ext.when == null || task.ext.when
kkonganti@0: 
kkonganti@0:     script:
kkonganti@0:         def prefix = (task.ext.prefix ?: meta.id)
kkonganti@0: 
kkonganti@0:         """
kkonganti@0:         rmlst_post.py \\
kkonganti@0:             -fasta $genome \\
kkonganti@0:             -prefix $prefix \\
kkonganti@0: 
kkonganti@0:         cat <<-END_VERSIONS > versions.yml
kkonganti@0:         "${task.process}":
kkonganti@0:             python: \$( python --version | sed 's/Python //g' )
kkonganti@0:             requests: \$( python -c "import requests; print (requests.__version__)" )
kkonganti@0:         END_VERSIONS
kkonganti@0:         """
kkonganti@0: }