# HG changeset patch
# User kkonganti
# Date 1721094042 14400
# Node ID a72c172df773093dd04d3a6c39349614e66846d2
# Parent  b571995ddb510bdd2bace85ea6fc60ed1a3bb6d0
planemo upload

diff -r b571995ddb51 -r a72c172df773 0.2.0/modules/custom/dump_software_versions/templates/dumpsoftwareversions.py
--- a/0.2.0/modules/custom/dump_software_versions/templates/dumpsoftwareversions.py	Mon Jul 15 19:01:29 2024 -0400
+++ b/0.2.0/modules/custom/dump_software_versions/templates/dumpsoftwareversions.py	Mon Jul 15 21:40:42 2024 -0400
@@ -55,7 +55,7 @@
     "yaml": yaml.__version__,
 }
 
-subprocess.run("cp $versions /galaxy/nf-work-dirs/", shell=True)
+# subprocess.run("cp $versions /galaxy/nf-work-dirs/", shell=True)
 
 with open("$versions") as f:
     versions_by_process = yaml.load(f, Loader=yaml.BaseLoader)
diff -r b571995ddb51 -r a72c172df773 0.2.0/modules/quast/main.nf
--- a/0.2.0/modules/quast/main.nf	Mon Jul 15 19:01:29 2024 -0400
+++ b/0.2.0/modules/quast/main.nf	Mon Jul 15 21:40:42 2024 -0400
@@ -60,7 +60,7 @@
             zcmd="gzip"
         
             if [ "${workflow.containerEngine}" != "null" ]; then
-                zver=\$( echo \$( \$zcmd --help 2>&1 ) | sed -e '1!d; s/ (.*\$//' )
+                zver=\$( echo \$( \$zcmd --version 2>&1 ) | sed -e '1!d; s/^.*\$zcmd //; s/ Copyright.*\$//' )
             else
                 zver=\$( echo \$( \$zcmd --version 2>&1 ) | sed "s/^.*(\$zcmd) //; s/\$zcmd //; s/ Copyright.*\$//" )
             fi