Mercurial > repos > kkonganti > cfsan_cronology
changeset 8:d8913a37810a
"planemo upload"
author | kkonganti |
---|---|
date | Mon, 27 Nov 2023 20:49:25 -0500 |
parents | f02f143c02fb |
children | 5eaaf749472c |
files | 0.1.0/modules/masurca/polish/main.nf 0.1.0/modules/shovill/main.nf |
diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/0.1.0/modules/masurca/polish/main.nf Mon Nov 27 20:24:38 2023 -0500 +++ b/0.1.0/modules/masurca/polish/main.nf Mon Nov 27 20:49:25 2023 -0500 @@ -20,8 +20,8 @@ script: def args = task.ext.args ?: '' - def memory = task.memory.toGiga() - def mem_per_thread = task.memory.toGiga().toInteger().div(task.cpus.toInteger()).round(0) + def memory = (task.memory ? task.memory.toGiga() : 16) + def mem_per_thread = memory.toGiga().toInteger().div(task.cpus.toInteger()).round(0) def all_reads = "${reads.join(' ')}" prefix = (task.ext.prefix ?: meta.id) """
--- a/0.1.0/modules/shovill/main.nf Mon Nov 27 20:24:38 2023 -0500 +++ b/0.1.0/modules/shovill/main.nf Mon Nov 27 20:49:25 2023 -0500 @@ -24,7 +24,7 @@ script: def args = task.ext.args ?: '' - def memory = task.memory.toGiga() + def memory = (task.memory ? task.memory.toGiga() : 16) prefix = (task.ext.prefix ?: meta.id) """ shovill \\