|
kkonganti@0
|
1 standard {
|
|
kkonganti@0
|
2 process.executor = 'local'
|
|
kkonganti@0
|
3 process.cpus = 1
|
|
kkonganti@0
|
4 params.enable_conda = false
|
|
kkonganti@0
|
5 params.enable_module = true
|
|
kkonganti@0
|
6 singularity.enabled = false
|
|
kkonganti@0
|
7 docker.enabled = false
|
|
kkonganti@0
|
8 }
|
|
kkonganti@0
|
9
|
|
kkonganti@0
|
10 stdkondagac {
|
|
kkonganti@0
|
11 process.executor = 'local'
|
|
kkonganti@0
|
12 process.cpus = 4
|
|
kkonganti@0
|
13 params.enable_conda = true
|
|
kkonganti@0
|
14 conda.enabled = true
|
|
kkonganti@0
|
15 conda.useMicromamba = true
|
|
kkonganti@0
|
16 params.enable_module = false
|
|
kkonganti@0
|
17 singularity.enabled = false
|
|
kkonganti@0
|
18 docker.enabled = false
|
|
kkonganti@0
|
19 }
|
|
kkonganti@0
|
20
|
|
kkonganti@0
|
21 stdcingularitygac {
|
|
kkonganti@0
|
22 process.executor = 'local'
|
|
kkonganti@0
|
23 process.cpus = 4
|
|
kkonganti@0
|
24 params.enable_conda = false
|
|
kkonganti@0
|
25 params.enable_module = false
|
|
kkonganti@0
|
26 singularity.enabled = true
|
|
kkonganti@0
|
27 singularity.autoMounts = true
|
|
kkonganti@0
|
28 singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
|
|
kkonganti@0
|
29 docker.enabled = false
|
|
kkonganti@0
|
30 }
|
|
kkonganti@0
|
31
|
|
kkonganti@0
|
32 raven {
|
|
kkonganti@0
|
33 process.executor = 'slurm'
|
|
kkonganti@0
|
34 process.queue = 'prod'
|
|
kkonganti@0
|
35 process.memory = '10GB'
|
|
kkonganti@0
|
36 process.cpus = 4
|
|
kkonganti@0
|
37 params.enable_conda = false
|
|
kkonganti@0
|
38 params.enable_module = true
|
|
kkonganti@0
|
39 singularity.enabled = false
|
|
kkonganti@0
|
40 docker.enabled = false
|
|
kkonganti@0
|
41 clusterOptions = '--signal B:USR2'
|
|
kkonganti@0
|
42 }
|
|
kkonganti@0
|
43
|
|
kkonganti@0
|
44 eprod {
|
|
kkonganti@0
|
45 process.executor = 'slurm'
|
|
kkonganti@0
|
46 process.queue = 'lowmem,midmem,bigmem'
|
|
kkonganti@0
|
47 process.memory = '10GB'
|
|
kkonganti@0
|
48 process.cpus = 4
|
|
kkonganti@0
|
49 params.enable_conda = false
|
|
kkonganti@0
|
50 params.enable_module = true
|
|
kkonganti@0
|
51 singularity.enabled = false
|
|
kkonganti@0
|
52 docker.enabled = false
|
|
kkonganti@0
|
53 clusterOptions = '--signal B:USR2'
|
|
kkonganti@0
|
54 }
|
|
kkonganti@0
|
55
|
|
kkonganti@0
|
56 eprodkonda {
|
|
kkonganti@0
|
57 process.executor = 'slurm'
|
|
kkonganti@0
|
58 process.queue = 'lowmem,midmem,bigmem'
|
|
kkonganti@0
|
59 process.memory = '10GB'
|
|
kkonganti@0
|
60 process.cpus = 4
|
|
kkonganti@0
|
61 params.enable_conda = true
|
|
kkonganti@0
|
62 conda.enabled = true
|
|
kkonganti@0
|
63 conda.useMicromamba = true
|
|
kkonganti@0
|
64 params.enable_module = false
|
|
kkonganti@0
|
65 singularity.enabled = false
|
|
kkonganti@0
|
66 singularity.autoMounts = true
|
|
kkonganti@0
|
67 singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
|
|
kkonganti@0
|
68 docker.enabled = false
|
|
kkonganti@0
|
69 clusterOptions = '--signal B:USR2'
|
|
kkonganti@0
|
70 }
|
|
kkonganti@0
|
71
|
|
kkonganti@0
|
72 eprodcingularity {
|
|
kkonganti@0
|
73 process.executor = 'slurm'
|
|
kkonganti@0
|
74 process.queue = 'lowmem,midmem,bigmem'
|
|
kkonganti@0
|
75 process.memory = '10GB'
|
|
kkonganti@0
|
76 process.cpus = 4
|
|
kkonganti@0
|
77 params.enable_conda = false
|
|
kkonganti@0
|
78 params.enable_module = false
|
|
kkonganti@0
|
79 singularity.enabled = true
|
|
kkonganti@0
|
80 singularity.autoMounts = true
|
|
kkonganti@0
|
81 singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
|
|
kkonganti@0
|
82 docker.enabled = false
|
|
kkonganti@0
|
83 clusterOptions = '--signal B:USR2'
|
|
kkonganti@0
|
84 }
|
|
kkonganti@0
|
85
|
|
kkonganti@0
|
86 cingularity {
|
|
kkonganti@0
|
87 process.executor = 'slurm'
|
|
kkonganti@0
|
88 process.queue = 'prod'
|
|
kkonganti@0
|
89 process.memory = '10GB'
|
|
kkonganti@0
|
90 process.cpus = 4
|
|
kkonganti@0
|
91 singularity.enabled = true
|
|
kkonganti@0
|
92 singularity.autoMounts = true
|
|
kkonganti@0
|
93 singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
|
|
kkonganti@0
|
94 docker.enabled = false
|
|
kkonganti@0
|
95 params.enable_conda = false
|
|
kkonganti@0
|
96 params.enable_module = false
|
|
kkonganti@0
|
97 clusterOptions = '--signal B:USR2'
|
|
kkonganti@0
|
98 }
|
|
kkonganti@0
|
99
|
|
kkonganti@0
|
100 cingularitygac {
|
|
kkonganti@0
|
101 process.executor = 'slurm'
|
|
kkonganti@0
|
102 executor.$slurm.exitReadTimeout = 120000
|
|
kkonganti@0
|
103 process.queue = 'centriflaken'
|
|
kkonganti@0
|
104 process.cpus = 4
|
|
kkonganti@0
|
105 singularity.enabled = true
|
|
kkonganti@0
|
106 singularity.autoMounts = true
|
|
kkonganti@0
|
107 singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
|
|
kkonganti@0
|
108 docker.enabled = false
|
|
kkonganti@0
|
109 params.enable_conda = false
|
|
kkonganti@0
|
110 params.enable_module = false
|
|
kkonganti@0
|
111 clusterOptions = '-n 1 --signal B:USR2'
|
|
kkonganti@0
|
112 }
|
|
kkonganti@0
|
113
|
|
kkonganti@0
|
114 konda {
|
|
kkonganti@0
|
115 process.executor = 'slurm'
|
|
kkonganti@0
|
116 process.queue = 'prod'
|
|
kkonganti@0
|
117 process.memory = '10GB'
|
|
kkonganti@0
|
118 process.cpus = 4
|
|
kkonganti@0
|
119 singularity.enabled = false
|
|
kkonganti@0
|
120 docker.enabled = false
|
|
kkonganti@0
|
121 params.enable_conda = true
|
|
kkonganti@0
|
122 conda.enabled = true
|
|
kkonganti@0
|
123 conda.useMicromamba = true
|
|
kkonganti@0
|
124 params.enable_module = false
|
|
kkonganti@0
|
125 clusterOptions = '--signal B:USR2'
|
|
kkonganti@0
|
126 }
|
|
kkonganti@0
|
127
|
|
kkonganti@0
|
128 kondagac {
|
|
kkonganti@0
|
129 process.executor = 'slurm'
|
|
kkonganti@0
|
130 executor.$slurm.exitReadTimeout = 120000
|
|
kkonganti@0
|
131 process.queue = 'centriflaken'
|
|
kkonganti@0
|
132 process.cpus = 4
|
|
kkonganti@0
|
133 singularity.enabled = false
|
|
kkonganti@0
|
134 docker.enabled = false
|
|
kkonganti@0
|
135 params.enable_conda = true
|
|
kkonganti@0
|
136 conda.enabled = true
|
|
kkonganti@0
|
137 conda.useMicromamba = true
|
|
kkonganti@0
|
138 params.enable_module = false
|
|
kkonganti@0
|
139 clusterOptions = '-n 1 --signal B:USR2'
|
|
kkonganti@0
|
140 }
|
|
kkonganti@0
|
141
|
|
kkonganti@0
|
142 cfsanawsbatch {
|
|
kkonganti@0
|
143 process.executor = 'awsbatch'
|
|
kkonganti@0
|
144 process.queue = 'cfsan-nf-batch-job-queue'
|
|
kkonganti@0
|
145 aws.batch.cliPath = '/home/ec2-user/miniconda/bin/aws'
|
|
kkonganti@0
|
146 aws.batch.region = 'us-east-1'
|
|
kkonganti@0
|
147 aws.batch.volumes = ['/hpc/db:/hpc/db:ro', '/hpc/scratch:/hpc/scratch:rw']
|
|
kkonganti@0
|
148 singularity.enabled = false
|
|
kkonganti@0
|
149 singularity.autoMounts = true
|
|
kkonganti@0
|
150 docker.enabled = true
|
|
kkonganti@0
|
151 params.enable_conda = false
|
|
kkonganti@0
|
152 conda.enabled = false
|
|
kkonganti@0
|
153 conda.useMicromamba = false
|
|
kkonganti@0
|
154 params.enable_module = false
|
|
kkonganti@0
|
155 }
|
