Mercurial > repos > kkonganti > hfp_nowayout

comparison hfp_nowayout.xml @ 6:5734210632d8

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planemo upload
author kkonganti
date Mon, 31 Mar 2025 15:16:56 -0400
parents 8dacdcb73547
children 74ac6f6a9526
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5:8dacdcb73547 6:5734210632d8
47 --nowo_thresholds $nowo_thresholds 47 --nowo_thresholds $nowo_thresholds
48 --fq_filename_delim '${fq_filename_delim}' 48 --fq_filename_delim '${fq_filename_delim}'
49 --fq_filename_delim_idx $fq_filename_delim_idx 49 --fq_filename_delim_idx $fq_filename_delim_idx
50 -profile gxkubernetes; 50 -profile gxkubernetes;
51 mv './cpipes-output/nowayout-multiqc/multiqc_report.html' './multiqc_report.html' || exit 1; 51 mv './cpipes-output/nowayout-multiqc/multiqc_report.html' './multiqc_report.html' || exit 1;
52 mv './cpipes-output/krona_ktimporttext/CPIPES_nowayout_krona.html './CPIPES_nowayout_krona.html' || exit 1; 52 mv './cpipes-output/krona_ktimporttext/CPIPES_nowayout_krona.html' './CPIPES_nowayout_krona.html' || exit 1;
53 rm -rf ./cpipes-output || exit 1; 53 rm -rf ./cpipes-output || exit 1;
54 rm -rf ./work || exit 1; 54 rm -rf ./work || exit 1;
55 ]]></command> 55 ]]></command>
56 <inputs> 56 <inputs>
57 <conditional name="input_read_type_cond"> 57 <conditional name="input_read_type_cond">