Mercurial > repos > kkonganti > hfp_nowayout

comparison hfp_nowayout.xml @ 3:63cb1cd8143b

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planemo upload
author kkonganti
date Mon, 31 Mar 2025 15:08:18 -0400
parents 463c7e606c77
children 9c9aeeb7ea4b
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2:463c7e606c77 3:63cb1cd8143b
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127 .. class:: infomark 127 .. class:: infomark
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129 ** Databases ** 129 **Databases**
130 130
131 - mitomine: Big database that works in almost all scenarios. 131 - *mitomine*: Big database that works in almost all scenarios.
132 - cytox1: Collection of only non-redundant COXI genes from NCBI. 132 - *cytox1*: Collection of only non-redundant COXI genes from NCBI.
133 - voucher: Collection of only non-redundant voucher sequences from NCBI. 133 - *voucher*: Collection of only non-redundant voucher sequences from NCBI.
134 - ganoderma: Collection of only non-redundant mtDNA sequences of Ganoderma fungi. 134 - *ganoderma*: Collection of only non-redundant mtDNA sequences of Ganoderma fungi.
135 - listeria: Collection of organelle sequences and other rRNA genes for Listeria. 135 - *listeria*: Collection of organelle sequences and other rRNA genes for Listeria.
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156 ** Please note ** 156 **Please note**
157 157
158 :: 158 - *nowayout* only works on Illumina short reads (paired or unpaired).
159 159 - *nowayout* uses a custom kma database named *mitomine*.
160 - nowayout only works on Illumina short reads (paired or unpaired). 160 - The custom database will be incrementally augmented and refined over time.
161 - nowayout uses a custom kma database named mitomine. 161 - *mitomine* stats:
162 - The custom database will be incrementally augmented and refined over time. 162 Contains ~ 2.93M non-redundant mitochondrial and voucher sequences.
163 - mitomine stats: 163 Represents ~ 717K unique species.
164 Contains ~ 2.93M non-redundant mitochondrial and voucher sequences. 164 - Other databases are also available but will be seldom updated.
165 Represents ~ 717K unique species.
166 - Other databases are also available but will be seldom updated.
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