Mercurial > repos > kkonganti > hfp_nowayout
diff 0.5.0/lib/help/kronaktimporttext.nf @ 0:97cd2f532efe
planemo upload
author | kkonganti |
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date | Mon, 31 Mar 2025 14:50:40 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/0.5.0/lib/help/kronaktimporttext.nf Mon Mar 31 14:50:40 2025 -0400 @@ -0,0 +1,44 @@ +// Help text for ktImportText (krona) within CPIPES. + +def kronaktimporttextHelp(params) { + + Map tool = [:] + Map toolspecs = [:] + tool.text = [:] + tool.helpparams = [:] + + toolspecs = [ + 'krona_ktIT_run': [ + clihelp: 'Run the ktImportText (ktIT) from krona. Default: ' + + (params.krona_ktIT_run ?: false), + cliflag: null, + clivalue: null + ], + 'krona_ktIT_n': [ + clihelp: 'Name of the highest level. ' + + "Default: ${params.krona_ktIT_n}", + cliflag: '-n', + clivalue: (params.krona_ktIT_n ?: '') + ], + 'krona_ktIT_q': [ + clihelp: 'Input file(s) do not have a field for quantity. ' + + "Default: ${params.krona_ktIT_q}", + cliflag: '-q', + clivalue: (params.krona_ktIT_q ? ' ' : '') + ], + 'krona_ktIT_c': [ + clihelp: 'Combine data from each file, rather than creating separate datasets ' + + 'within the chart. ' + + "Default: ${params.krona_ktIT_c}", + cliflag: '-c', + clivalue: (params.krona_ktIT_c ? ' ' : '') + ] + ] + + toolspecs.each { + k, v -> tool.text['--' + k] = "${v.clihelp}" + tool.helpparams[k] = [ cliflag: "${v.cliflag}", clivalue: v.clivalue ] + } + + return tool +} \ No newline at end of file