kkonganti@0: standard {
kkonganti@0:     process.executor = 'local'
kkonganti@0:     process.cpus = 1
kkonganti@0:     params.enable_conda = false
kkonganti@0:     params.enable_module = true
kkonganti@0:     singularity.enabled = false
kkonganti@0:     docker.enabled = false
kkonganti@0: }
kkonganti@0: 
kkonganti@0: stdkondagac {
kkonganti@0:     process.executor = 'local'
kkonganti@0:     process.cpus = 4
kkonganti@0:     params.enable_conda = true
kkonganti@0:     conda.enabled = true
kkonganti@0:     conda.useMicromamba = true
kkonganti@0:     params.enable_module = false
kkonganti@0:     singularity.enabled = false
kkonganti@0:     docker.enabled = false
kkonganti@0: }
kkonganti@0: 
kkonganti@0: stdcingularitygac {
kkonganti@0:     process.executor = 'local'
kkonganti@0:     process.cpus = 4
kkonganti@0:     params.enable_conda = false
kkonganti@0:     params.enable_module = false
kkonganti@0:     singularity.enabled = true
kkonganti@0:     singularity.autoMounts = true
kkonganti@0:     singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
kkonganti@0:     docker.enabled = false
kkonganti@0: }
kkonganti@0: 
kkonganti@0: raven {
kkonganti@0:     process.executor = 'slurm'
kkonganti@0:     process.queue = 'prod'
kkonganti@0:     process.memory = '10GB'
kkonganti@0:     process.cpus = 4
kkonganti@0:     params.enable_conda = false
kkonganti@0:     params.enable_module = true
kkonganti@0:     singularity.enabled = false
kkonganti@0:     docker.enabled = false
kkonganti@0:     clusterOptions = '--signal B:USR2'
kkonganti@0: }
kkonganti@0: 
kkonganti@0: eprod {
kkonganti@0:     process.executor = 'slurm'
kkonganti@0:     process.queue = 'lowmem,midmem,bigmem'
kkonganti@0:     process.memory = '10GB'
kkonganti@0:     process.cpus = 4
kkonganti@0:     params.enable_conda = false
kkonganti@0:     params.enable_module = true
kkonganti@0:     singularity.enabled = false
kkonganti@0:     docker.enabled = false
kkonganti@0:     clusterOptions = '--signal B:USR2'
kkonganti@0: }
kkonganti@0: 
kkonganti@0: eprodkonda {
kkonganti@0:     process.executor = 'slurm'
kkonganti@0:     process.queue = 'lowmem,midmem,bigmem'
kkonganti@0:     process.memory = '10GB'
kkonganti@0:     process.cpus = 4
kkonganti@0:     params.enable_conda = true
kkonganti@0:     conda.enabled = true
kkonganti@0:     conda.useMicromamba = true
kkonganti@0:     params.enable_module = false
kkonganti@0:     singularity.enabled = false
kkonganti@0:     singularity.autoMounts = true
kkonganti@0:     singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
kkonganti@0:     docker.enabled = false
kkonganti@0:     clusterOptions = '--signal B:USR2'
kkonganti@0: }
kkonganti@0: 
kkonganti@0: eprodcingularity {
kkonganti@0:     process.executor = 'slurm'
kkonganti@0:     process.queue = 'lowmem,midmem,bigmem'
kkonganti@0:     process.memory = '10GB'
kkonganti@0:     process.cpus = 4
kkonganti@0:     params.enable_conda = false
kkonganti@0:     params.enable_module = false
kkonganti@0:     singularity.enabled = true
kkonganti@0:     singularity.autoMounts = true
kkonganti@0:     singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
kkonganti@0:     docker.enabled = false
kkonganti@0:     clusterOptions = '--signal B:USR2'
kkonganti@0: }
kkonganti@0: 
kkonganti@0: cingularity {
kkonganti@0:     process.executor = 'slurm'
kkonganti@0:     process.queue = 'prod'
kkonganti@0:     process.memory = '10GB'
kkonganti@0:     process.cpus = 4
kkonganti@0:     singularity.enabled = true
kkonganti@0:     singularity.autoMounts = true
kkonganti@0:     singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
kkonganti@0:     docker.enabled = false
kkonganti@0:     params.enable_conda = false
kkonganti@0:     params.enable_module = false
kkonganti@0:     clusterOptions = '--signal B:USR2'
kkonganti@0: }
kkonganti@0: 
kkonganti@0: cingularitygac {
kkonganti@0:     process.executor = 'slurm'
kkonganti@0:     executor.$slurm.exitReadTimeout = 120000
kkonganti@0:     process.queue = 'centriflaken'
kkonganti@0:     process.cpus = 4
kkonganti@0:     singularity.enabled = true
kkonganti@0:     singularity.autoMounts = true
kkonganti@0:     singularity.runOptions = "-B ${params.input} -B ${params.bcs_root_dbdir}"
kkonganti@0:     docker.enabled = false
kkonganti@0:     params.enable_conda = false
kkonganti@0:     params.enable_module = false
kkonganti@0:     clusterOptions = '-n 1 --signal B:USR2'
kkonganti@0: }
kkonganti@0: 
kkonganti@0: konda {
kkonganti@0:     process.executor = 'slurm'
kkonganti@0:     process.queue = 'prod'
kkonganti@0:     process.memory = '10GB'
kkonganti@0:     process.cpus = 4
kkonganti@0:     singularity.enabled = false
kkonganti@0:     docker.enabled = false
kkonganti@0:     params.enable_conda = true
kkonganti@0:     conda.enabled = true
kkonganti@0:     conda.useMicromamba = true
kkonganti@0:     params.enable_module = false
kkonganti@0:     clusterOptions = '--signal B:USR2'
kkonganti@0: }
kkonganti@0: 
kkonganti@0: kondagac {
kkonganti@0:     process.executor = 'slurm'
kkonganti@0:     executor.$slurm.exitReadTimeout = 120000
kkonganti@0:     process.queue = 'centriflaken'
kkonganti@0:     process.cpus = 4
kkonganti@0:     singularity.enabled = false
kkonganti@0:     docker.enabled = false
kkonganti@0:     params.enable_conda = true
kkonganti@0:     conda.enabled = true
kkonganti@0:     conda.useMicromamba = true
kkonganti@0:     params.enable_module = false
kkonganti@0:     clusterOptions = '-n 1 --signal B:USR2'
kkonganti@0: }
kkonganti@0: 
kkonganti@0: cfsanawsbatch {
kkonganti@0:     process.executor = 'awsbatch'
kkonganti@0:     process.queue = 'cfsan-nf-batch-job-queue'
kkonganti@0:     aws.batch.cliPath = '/home/ec2-user/miniconda/bin/aws'
kkonganti@0:     aws.batch.region = 'us-east-1'
kkonganti@0:     aws.batch.volumes = ['/hpc/db:/hpc/db:ro', '/hpc/scratch:/hpc/scratch:rw']
kkonganti@0:     singularity.enabled = false
kkonganti@0:     singularity.autoMounts = true
kkonganti@0:     docker.enabled = true
kkonganti@0:     params.enable_conda = false
kkonganti@0:     conda.enabled = false
kkonganti@0:     conda.useMicromamba = false
kkonganti@0:     params.enable_module = false
kkonganti@0: }
kkonganti@7: 
kkonganti@7: gxkubernetes {
kkonganti@7:     process.executor = 'k8s'
kkonganti@7:     k8s.namespace = 'galaxy'
kkonganti@7:     k8s.serviceAccount = 'default'
kkonganti@7:     k8s.pod = [
kkonganti@7:         [volumeClaim: 's3-centriflaken-claim', mountPath: '/galaxy/cfsan-centriflaken-db'],
kkonganti@7:         [volumeClaim: 's3-nextflow-claim', mountPath: '/galaxy/nf-work-dirs'],
kkonganti@7:         [volumeClaim: 'galaxy-galaxy-pvc', mountPath: '/galaxy/server/database'],
kkonganti@7:         [priorityClassName: 'galaxy-job-priority']
kkonganti@7:     ]
kkonganti@7:     singularity.enabled = false
kkonganti@7:     docker.enabled = true
kkonganti@7:     params.enable_conda = false
kkonganti@7:     params.enable_module = false
kkonganti@7: }