kkonganti@0: // Help text for gen_sim_abn_table.py (gsat) within CPIPES.
kkonganti@0: 
kkonganti@0: def gsatpyHelp(params) {
kkonganti@0: 
kkonganti@0:     Map tool = [:]
kkonganti@0:     Map toolspecs = [:]
kkonganti@0:     tool.text = [:]
kkonganti@0:     tool.helpparams = [:]
kkonganti@0: 
kkonganti@0:     toolspecs = [
kkonganti@0:         'gsatpy_run': [
kkonganti@0:             clihelp: 'Run the gen_sim_abn_table.py script. Default: ' +
kkonganti@0:                 (params.gsatpy_run ?: false),
kkonganti@0:             cliflag: null,
kkonganti@0:             clivalue: null
kkonganti@0:         ],
kkonganti@0:         'gsatpy_header': [
kkonganti@0:             clihelp: 'Does the taxonomic summary result files have ' +
kkonganti@0:                 'a header line. ' +
kkonganti@0:                 " Default: ${params.gsatpy_header}",
kkonganti@0:             cliflag: '-header',
kkonganti@0:             clivalue: (params.gsatpy_header ? ' ' : '')
kkonganti@0:         ]
kkonganti@0:     ]
kkonganti@0: 
kkonganti@0:     toolspecs.each {
kkonganti@0:         k, v -> tool.text['--' + k] = "${v.clihelp}"
kkonganti@0:         tool.helpparams[k] = [ cliflag: "${v.cliflag}", clivalue: v.clivalue ]
kkonganti@0:     }
kkonganti@0: 
kkonganti@0:     return tool
kkonganti@0: }