# HG changeset patch
# User kkonganti
# Date 1743517645 14400
# Node ID 3539fbeb42302c39d7ccd9f041daa0f974f94c04
# Parent  a5055946f9c2ec93aa6ce23aeccbbecdc984029a
planemo upload

diff -r a5055946f9c2 -r 3539fbeb4230 0.5.0/workflows/nowayout.nf
--- a/0.5.0/workflows/nowayout.nf	Mon Mar 31 15:25:02 2025 -0400
+++ b/0.5.0/workflows/nowayout.nf	Tue Apr 01 10:27:25 2025 -0400
@@ -301,10 +301,19 @@
     file_path_obj = file( file_path )
     
     if (msg.toString().find(/(?i)KMA/)) {
-        if (!file_path_obj.parent.exists() || file_path_obj.parent.size() == 0) {
+        if (!file_path_obj.parent.exists()) {
             stopNow("Please check if your ${msg}\n" +
                 "[ ${file_path} ]\nexists and that the files are not of size 0.")
         }
+        
+        // Check if db files within parent path are empty.
+        file_path_obj.eachFileRecurse {
+            if (it.size() == 0) {
+                stopNow("For ${msg}, within\n" +
+                "[ ${file_path} ],\nthe following file is of size 0: ${it.name}")
+            }
+        }
+
     }
     else if (!file_path_obj.exists() || file_path_obj.size() == 0) {
         stopNow("Please check if your ${msg} file\n" +