# HG changeset patch # User kkonganti # Date 1743520081 14400 # Node ID 74ac6f6a9526572aed3c4128efaf7f772bbd89e3 # Parent 9c603577838ae70888e49bab227f579b0012a337 planemo upload diff -r 9c603577838a -r 74ac6f6a9526 hfp_nowayout.xml --- a/hfp_nowayout.xml Tue Apr 01 10:27:56 2025 -0400 +++ b/hfp_nowayout.xml Tue Apr 01 11:08:01 2025 -0400 @@ -48,8 +48,8 @@ --fq_filename_delim '${fq_filename_delim}' --fq_filename_delim_idx $fq_filename_delim_idx -profile gxkubernetes; - mv './cpipes-output/nowayout-multiqc/multiqc_report.html' './multiqc_report.html' || exit 1; - mv './cpipes-output/krona_ktimporttext/CPIPES_nowayout_krona.html' './CPIPES_nowayout_krona.html' || exit 1; + mv './cpipes-output/nowayout-multiqc/CPIPES-Report_multiqc_report.html' './multiqc_report.html' || exit 1; + if [ -e './cpipes-output/krona_ktimporttext/CPIPES_nowayout_krona.html' ]; then mv './cpipes-output/krona_ktimporttext/CPIPES_nowayout_krona.html' './CPIPES_nowayout_krona.html'; else echo '

No mitochondrial reads detected in any of the samples

' > './CPIPES_nowayout_krona.html'; fi; rm -rf ./cpipes-output || exit 1; rm -rf ./work || exit 1; ]]>