Mercurial > repos > kkonganti > lexmapr2_from_cfsan

comparison cfsan_lexmapr2.xml @ 2:328a5cff4d10

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"planemo upload"
author kkonganti
date Thu, 15 Sep 2022 12:57:33 -0400
parents 6fc05c435932
children c56b568f3dde
comparison
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1:6fc05c435932 2:328a5cff4d10
30 <environment_variable name="NLTK_DATA">/tool/tool-data/cfsan_lexmapr2/0/nltk_data</environment_variable> 30 <environment_variable name="NLTK_DATA">/tool/tool-data/cfsan_lexmapr2/0/nltk_data</environment_variable>
31 </environment_variables> 31 </environment_variables>
32 <inputs> 32 <inputs>
33 <param name="input" type="data" format="csv" label="Input CSV" 33 <param name="input" type="data" format="csv" label="Input CSV"
34 help="First row should be a header and first column should be sample names" /> 34 help="First row should be a header and first column should be sample names" />
35 <param name="embl_ont" type="text" optional="true"
36 label="User defined comma-separated EMBL Ontology short names" />
35 <conditional name="input_json"> 37 <conditional name="input_json">
36 <param name="json_is_set" type="boolean" label="Use User defined bins in JSON format?" /> 38 <param name="json_is_set" type="boolean" label="Use User defined bins in JSON format?" />
37 <when value="true"> 39 <when value="true">
38 <param name="upload" type="data" format="json" label="User defined bins" /> 40 <param name="upload" type="data" format="json" label="User defined bins" />
39 </when> 41 </when>
40 <when value="false"> 42 <when value="false">
41 </when> 43 </when>
42 </conditional> 44 </conditional>
43 <param name="embl_ont" type="text" optional="true"
44 label="User defined comma-separated EMBL Ontology short names" />
45 <param name="bins" truevalue="-b" type="boolean" checked="true" 45 <param name="bins" truevalue="-b" type="boolean" checked="true"
46 label="Classify samples into default bins" help="Default: true"/> 46 label="Classify samples into default bins" help="Default: true"/>
47 <param name="graph" truevalue="-g" type="boolean" checked="true" 47 <param name="graph" truevalue="-g" type="boolean" checked="true"
48 label="Visualize summary of mapping and binning" help="Default: true"/> 48 label="Visualize summary of mapping and binning" help="Default: true"/>
49 <param name="full" truevalue="-f" type="boolean" checked="false" 49 <param name="full" truevalue="-f" type="boolean" checked="false"
126 url = {https://github.com/CFSAN-Biostatistics/LexMapr2}} 126 url = {https://github.com/CFSAN-Biostatistics/LexMapr2}}
127 </citation> 127 </citation>
128 <citation type="bibtex"> 128 <citation type="bibtex">
129 @misc{GalaxyToolWrapper, 129 @misc{GalaxyToolWrapper,
130 author = {Konganti, Kranti}, 130 author = {Konganti, Kranti},
131 year = {2022}} 131 year = {2022},
132 title = {Lexmapr2 Tool Wrapper for Galaxy},
133 journal = {GalaxyTrakr Tool repository},
134 url = {https://toolrepo.galaxytrakr.org/repository/browse_repository?id=e00d4fc8bba8b6c5}}
132 </citation> 135 </citation>
133 </citations> 136 </citations>
134 </tool> 137 </tool>