Mercurial > repos > kkonganti > lexmapr2_from_cfsan

comparison cfsan_lexmapr2.xml @ 6:50dfbc250705

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"planemo upload"
author kkonganti
date Thu, 15 Sep 2022 13:24:01 -0400
parents aff588690526
children 1a016f646687
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5:aff588690526 6:50dfbc250705
36 #end if 36 #end if
37 ./lexmapr2-input/$input.name 37 ./lexmapr2-input/$input.name
38 ]]></command> 38 ]]></command>
39 <environment_variables> 39 <environment_variables>
40 <environment_variable name="NLTK_DATA">/tool/tool-data/cfsan_lexmapr2/0/nltk_data</environment_variable> 40 <environment_variable name="NLTK_DATA">/tool/tool-data/cfsan_lexmapr2/0/nltk_data</environment_variable>
41 <environment_variable name="PYTHON_PATH">#if [ ! -z "$PYTHON_PATH" ]; then echo "/tool/tool-data/cfsan_lexmapr2/0:$PYTHON_PATH"; else echo "$PYTHON_PATH"; fi</environment_variable> 41 <environment_variable name="PYTHON_PATH">if [ ! -z "$PYTHON_PATH" ]; then echo "/tool/tool-data/cfsan_lexmapr2/0:$PYTHON_PATH"; else echo "$PYTHON_PATH"; fi</environment_variable>
42 </environment_variables> 42 </environment_variables>
43 <inputs> 43 <inputs>
44 <param name="input" type="data" format="csv" label="Input CSV" 44 <param name="input" type="data" format="csv" label="Input CSV"
45 help="First row should be a header and first column should be sample names" /> 45 help="First row should be a header and first column should be sample names" />
46 <param name="embl_ont" type="text" optional="true" 46 <param name="embl_ont" type="text" optional="true"