Mercurial > repos > kkonganti > lexmapr2_from_cfsan

comparison cfsan_lexmapr2.xml @ 1:6fc05c435932

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"planemo upload"
author kkonganti
date Thu, 15 Sep 2022 12:52:53 -0400
parents 91438d32ed58
children 328a5cff4d10
comparison
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0:91438d32ed58 1:6fc05c435932
19 #end if 19 #end if
20 $no_ancestors 20 $no_ancestors
21 $bins 21 $bins
22 $full 22 $full
23 $graph 23 $graph
24 #for $in_json in $input_json 24 #if $input_json.json_is_set
25 #if $in_json 25 -u "$input_json.upload"
26 -u "$in_json" 26 #end if
27 #end if 27 $input
28 #end for
29 ]]></command> 28 ]]></command>
30 <environment_variables> 29 <environment_variables>
31 <environment_variable name="NLTK_DATA">/tool/tool-data/cfsan_lexmapr2/0/nltk_data</environment_variable> 30 <environment_variable name="NLTK_DATA">/tool/tool-data/cfsan_lexmapr2/0/nltk_data</environment_variable>
32 </environment_variables> 31 </environment_variables>
33 <inputs> 32 <inputs>
34 <param name="input" type="data" format="csv" label="Input CSV" 33 <param name="input" type="data" format="csv" label="Input CSV"
35 help="First row should be a header and first column should be sample names" /> 34 help="First row should be a header and first column should be sample names" />
36 <param name="input_json" type="data" format="json" optional="true" 35 <conditional name="input_json">
37 label="User defined bins in JSON format" /> 36 <param name="json_is_set" type="boolean" label="Use User defined bins in JSON format?" />
37 <when value="true">
38 <param name="upload" type="data" format="json" label="User defined bins" />
39 </when>
40 <when value="false">
41 </when>
42 </conditional>
38 <param name="embl_ont" type="text" optional="true" 43 <param name="embl_ont" type="text" optional="true"
39 label="User defined comma-separated EMBL Ontology short names" /> 44 label="User defined comma-separated EMBL Ontology short names" />
40 <param name="bins" truevalue="-b" type="boolean" checked="true" 45 <param name="bins" truevalue="-b" type="boolean" checked="true"
41 label="Classify samples into default bins" help="Default: true"/> 46 label="Classify samples into default bins" help="Default: true"/>
42 <param name="graph" truevalue="-g" type="boolean" checked="true" 47 <param name="graph" truevalue="-g" type="boolean" checked="true"