Mercurial > repos > kkonganti > lexmapr2_from_cfsan

comparison cfsan_lexmapr2.xml @ 4:b959a72ca0b5

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"planemo upload"
author kkonganti
date Thu, 15 Sep 2022 13:06:31 -0400
parents c56b568f3dde
children aff588690526
comparison
equal deleted inserted replaced
3:c56b568f3dde 4:b959a72ca0b5
11 <requirement type="package">seaborn</requirement> 11 <requirement type="package">seaborn</requirement>
12 <requirement type="package">pygraphviz</requirement> 12 <requirement type="package">pygraphviz</requirement>
13 </requirements> 13 </requirements>
14 <version_command>python $__tool_directory__/lexmapr2.py --version</version_command> 14 <version_command>python $__tool_directory__/lexmapr2.py --version</version_command>
15 <command detect_errors="exit_code"><![CDATA[ 15 <command detect_errors="exit_code"><![CDATA[
16 mkdir -p lexmapr2-input || exit 1;
17 ln -sf '$input' './lexmapr2-input/$input.name';
16 python $__tool_directory__/lexmapr2.py 18 python $__tool_directory__/lexmapr2.py
17 #if ($embl_ont != ""): 19 #if ($embl_ont != ""):
18 -e $embl_ont 20 -e $embl_ont
19 #end if 21 #end if
20 #if (str($no_ancestors) != "false"): 22 #if (str($no_ancestors) != "false"):
30 $graph 32 $graph
31 #end if 33 #end if
32 #if $input_json.json_is_set: 34 #if $input_json.json_is_set:
33 -u "$input_json.upload" 35 -u "$input_json.upload"
34 #end if 36 #end if
35 $input 37 ./lexmapr2-input/$input.name
36 ]]></command> 38 ]]></command>
37 <environment_variables> 39 <environment_variables>
38 <environment_variable name="NLTK_DATA">/tool/tool-data/cfsan_lexmapr2/0/nltk_data</environment_variable> 40 <environment_variable name="NLTK_DATA">/tool/tool-data/cfsan_lexmapr2/0/nltk_data</environment_variable>
39 </environment_variables> 41 </environment_variables>
40 <inputs> 42 <inputs>