Mercurial > repos > kkonganti > lexmapr2_from_cfsan
diff cfsan_lexmapr2.xml @ 11:abb0fc18a85d
"planemo upload"
| author | kkonganti |
|---|---|
| date | Thu, 15 Sep 2022 13:53:29 -0400 |
| parents | af76096f7a10 |
| children | 530cafac56f9 |
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--- a/cfsan_lexmapr2.xml Thu Sep 15 13:44:56 2022 -0400 +++ b/cfsan_lexmapr2.xml Thu Sep 15 13:53:29 2022 -0400 @@ -13,7 +13,7 @@ </requirements> <version_command>python $__tool_directory__/lexmapr2.py --version</version_command> <command detect_errors="exit_code"><![CDATA[ - echo $PYTHONPATH; + echo $PYTHONPATH 1>&2; mkdir -p lexmapr2-input || exit 1; ln -sf '$input' './lexmapr2-input/$input.name'; python $__tool_directory__/lexmapr2.py @@ -39,7 +39,7 @@ ]]></command> <environment_variables> <environment_variable name="NLTK_DATA">/tool/tool-data/cfsan_lexmapr2/0/nltk_data</environment_variable> - <environment_variable name="PYTHONPATH">if [ ! -z "\$PYTHONPATH" ]; then echo "/tool/tool-data/cfsan_lexmapr2/0:\$PYTHONPATH"; else echo "\$PYTHONPATH"; fi</environment_variable> + <environment_variable name="PYTHONPATH">/tool/tool-data/cfsan_lexmapr2/0</environment_variable> </environment_variables> <inputs> <param name="input" type="data" format="csv" label="Input CSV"