Mercurial > repos > kkonganti > lexmapr2_from_cfsan
diff cfsan_lexmapr2.xml @ 17:b4ef74a844e6
"planemo upload"
author | kkonganti |
---|---|
date | Thu, 15 Sep 2022 14:41:43 -0400 |
parents | 64fe14d9e2c8 |
children | 62b848017a6a |
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--- a/cfsan_lexmapr2.xml Thu Sep 15 14:30:30 2022 -0400 +++ b/cfsan_lexmapr2.xml Thu Sep 15 14:41:43 2022 -0400 @@ -36,7 +36,8 @@ -u "$input_json.upload" #end if -o lexmapr2_output.tsv - ./lexmapr2-input/$input.name + ./lexmapr2-input/$input.name; + mv 'lexmapr_run.log' 'lexmapr2_run_log.txt' || exit 1; ]]></command> <environment_variables> <environment_variable name="NLTK_DATA">/tool/tool-data/cfsan_lexmapr2/0/nltk_data</environment_variable> @@ -67,9 +68,9 @@ <outputs> <data name="lexmapr2_output" format="tsv" label="Lexmapr2: Results On ${on_string}" from_work_dir="lexmapr2_output.tsv"/> <collection name="plots" type="list" label="Lexmapr2: Plots on ${on_string}"> - <discover_datasets ext="png" directory="lexmapr_figures"/> + <discover_datasets pattern="(?P<designation>.+)" ext="png" directory="lexmapr_figures"/> </collection> - <data name="lexmapr2_log" format="txt" label="Lexmapr2: Log On ${on_string}" from_work_dir="lexmapr_run.log"/> + <data name="lexmapr2_log" format="txt" label="Lexmapr2: Log On ${on_string}" from_work_dir="lexmapr2_run_log.txt"/> </outputs> <tests> <test expect_num_outputs="2">