# HG changeset patch
# User kkonganti
# Date 1663266113 14400
# Node ID 7af47af89580b7a5726a85166997b3b0a2c5c436
# Parent  89998b9b4d46b9477794245f4c0a2be3962d05c0
"planemo upload"

diff -r 89998b9b4d46 -r 7af47af89580 cfsan_lexmapr2.xml
--- a/cfsan_lexmapr2.xml	Thu Sep 15 14:15:53 2022 -0400
+++ b/cfsan_lexmapr2.xml	Thu Sep 15 14:21:53 2022 -0400
@@ -35,6 +35,7 @@
     #if $input_json.json_is_set:
         -u "$input_json.upload"
     #end if
+    -o lexmapr2_output.tsv
     ./lexmapr2-input/$input.name
     ]]></command>
     <environment_variables>
@@ -58,8 +59,8 @@
             label="Classify samples into default bins" help="Default: true"/>
         <param name="graph" truevalue="-g" type="boolean" checked="true"
             label="Visualize summary of mapping and binning" help="Default: true"/>
-        <param name="full" truevalue="-f" type="boolean" checked="false"
-            label="Generate full output format" help="Default: false"/>
+        <param name="full" truevalue="-f" type="boolean" checked="true"
+            label="Generate full output format" help="Default: true"/>
         <param name="no_ancestors" truevalue="-a" type="boolean" checked="false"
             label="Remove ancestral terms from output" help="Default: false"/>
     </inputs>