# HG changeset patch
# User kkonganti
# Date 1663264409 14400
# Node ID abb0fc18a85d213fd51b304e5c68d6dd94ef32ce
# Parent  af76096f7a1059adaabe1ef243d5c31bbe572f3c
"planemo upload"

diff -r af76096f7a10 -r abb0fc18a85d cfsan_lexmapr2.xml
--- a/cfsan_lexmapr2.xml	Thu Sep 15 13:44:56 2022 -0400
+++ b/cfsan_lexmapr2.xml	Thu Sep 15 13:53:29 2022 -0400
@@ -13,7 +13,7 @@
     </requirements>
     <version_command>python $__tool_directory__/lexmapr2.py --version</version_command>
     <command detect_errors="exit_code"><![CDATA[
-    echo $PYTHONPATH;
+    echo $PYTHONPATH 1>&2;
     mkdir -p lexmapr2-input || exit 1;
     ln -sf '$input' './lexmapr2-input/$input.name';
     python $__tool_directory__/lexmapr2.py
@@ -39,7 +39,7 @@
     ]]></command>
     <environment_variables>
         <environment_variable name="NLTK_DATA">/tool/tool-data/cfsan_lexmapr2/0/nltk_data</environment_variable>
-        <environment_variable name="PYTHONPATH">if [ ! -z "\$PYTHONPATH" ]; then echo "/tool/tool-data/cfsan_lexmapr2/0:\$PYTHONPATH"; else echo "\$PYTHONPATH"; fi</environment_variable>
+        <environment_variable name="PYTHONPATH">/tool/tool-data/cfsan_lexmapr2/0</environment_variable>
     </environment_variables>
     <inputs>
         <param name="input" type="data" format="csv" label="Input CSV"