Mercurial > repos > kkonganti > lexmapr2_from_cfsan

changeset 8:f4c56a885fdc

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"planemo upload"
author kkonganti
date Thu, 15 Sep 2022 13:38:06 -0400
parents 1a016f646687
children 9c2c4e53beb8
files cfsan_lexmapr2.xml
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/cfsan_lexmapr2.xml	Thu Sep 15 13:29:24 2022 -0400
+++ b/cfsan_lexmapr2.xml	Thu Sep 15 13:38:06 2022 -0400
@@ -13,6 +13,7 @@
     </requirements>
     <version_command>python $__tool_directory__/lexmapr2.py --version</version_command>
     <command detect_errors="exit_code"><![CDATA[
+    export PYTHON_PATH=
     mkdir -p lexmapr2-input || exit 1;
     ln -sf '$input' './lexmapr2-input/$input.name';
     python $__tool_directory__/lexmapr2.py
@@ -38,7 +39,7 @@
     ]]></command>
     <environment_variables>
         <environment_variable name="NLTK_DATA">/tool/tool-data/cfsan_lexmapr2/0/nltk_data</environment_variable>
-        <environment_variable name="PYTHON_PATH">if [ ! -z "\$PYTHON_PATH" ]; then echo "/tool/tool-data/cfsan_lexmapr2/0:\$PYTHON_PATH"; else echo "\$PYTHON_PATH"; fi</environment_variable>
+        <environment_variable name="PYTHONPATH">if [ ! -z "\$PYTHONPATH" ]; then echo "/tool/tool-data/cfsan_lexmapr2/0:\$PYTHONPATH"; else echo "\$PYTHONPATH"; fi</environment_variable>
     </environment_variables>
     <inputs>
         <param name="input" type="data" format="csv" label="Input CSV"