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"planemo upload"
author rliterman
date Mon, 02 Dec 2024 16:59:34 -0500
parents 01431fa12065
children
rev   line source
rliterman@0 1 # Created by https://www.toptal.com/developers/gitignore/api/python,visualstudiocode,virtualenv
rliterman@0 2 # Edit at https://www.toptal.com/developers/gitignore?templates=python,visualstudiocode,virtualenv
rliterman@0 3
rliterman@0 4 ### Python ###
rliterman@0 5 # Byte-compiled / optimized / DLL files
rliterman@0 6 __pycache__/
rliterman@0 7 *.py[cod]
rliterman@0 8 *$py.class
rliterman@0 9
rliterman@0 10 # C extensions
rliterman@0 11 *.so
rliterman@0 12
rliterman@0 13 # Distribution / packaging
rliterman@0 14 .Python
rliterman@0 15 build/
rliterman@0 16 develop-eggs/
rliterman@0 17 dist/
rliterman@0 18 downloads/
rliterman@0 19 eggs/
rliterman@0 20 .eggs/
rliterman@0 21 lib/
rliterman@0 22 lib64/
rliterman@0 23 parts/
rliterman@0 24 sdist/
rliterman@0 25 var/
rliterman@0 26 wheels/
rliterman@0 27 share/python-wheels/
rliterman@0 28 *.egg-info/
rliterman@0 29 .installed.cfg
rliterman@0 30 *.egg
rliterman@0 31 MANIFEST
rliterman@0 32
rliterman@0 33 # PyInstaller
rliterman@0 34 # Usually these files are written by a python script from a template
rliterman@0 35 # before PyInstaller builds the exe, so as to inject date/other infos into it.
rliterman@0 36 *.manifest
rliterman@0 37 *.spec
rliterman@0 38
rliterman@0 39 # Installer logs
rliterman@0 40 pip-log.txt
rliterman@0 41 pip-delete-this-directory.txt
rliterman@0 42
rliterman@0 43 # Unit test / coverage reports
rliterman@0 44 htmlcov/
rliterman@0 45 .tox/
rliterman@0 46 .nox/
rliterman@0 47 .coverage
rliterman@0 48 .coverage.*
rliterman@0 49 .cache
rliterman@0 50 nosetests.xml
rliterman@0 51 coverage.xml
rliterman@0 52 *.cover
rliterman@0 53 *.py,cover
rliterman@0 54 .hypothesis/
rliterman@0 55 .pytest_cache/
rliterman@0 56 cover/
rliterman@0 57
rliterman@0 58 # Translations
rliterman@0 59 *.mo
rliterman@0 60 *.pot
rliterman@0 61
rliterman@0 62 # Django stuff:
rliterman@0 63 *.log
rliterman@0 64 local_settings.py
rliterman@0 65 db.sqlite3
rliterman@0 66 db.sqlite3-journal
rliterman@0 67
rliterman@0 68 # Flask stuff:
rliterman@0 69 instance/
rliterman@0 70 .webassets-cache
rliterman@0 71
rliterman@0 72 # Scrapy stuff:
rliterman@0 73 .scrapy
rliterman@0 74
rliterman@0 75 # Sphinx documentation
rliterman@0 76 docs/_build/
rliterman@0 77
rliterman@0 78 # PyBuilder
rliterman@0 79 .pybuilder/
rliterman@0 80 target/
rliterman@0 81
rliterman@0 82 # Jupyter Notebook
rliterman@0 83 .ipynb_checkpoints
rliterman@0 84
rliterman@0 85 # IPython
rliterman@0 86 profile_default/
rliterman@0 87 ipython_config.py
rliterman@0 88
rliterman@0 89 # pyenv
rliterman@0 90 # For a library or package, you might want to ignore these files since the code is
rliterman@0 91 # intended to run in multiple environments; otherwise, check them in:
rliterman@0 92 # .python-version
rliterman@0 93
rliterman@0 94 # pipenv
rliterman@0 95 # According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
rliterman@0 96 # However, in case of collaboration, if having platform-specific dependencies or dependencies
rliterman@0 97 # having no cross-platform support, pipenv may install dependencies that don't work, or not
rliterman@0 98 # install all needed dependencies.
rliterman@0 99 #Pipfile.lock
rliterman@0 100
rliterman@0 101 # poetry
rliterman@0 102 # Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
rliterman@0 103 # This is especially recommended for binary packages to ensure reproducibility, and is more
rliterman@0 104 # commonly ignored for libraries.
rliterman@0 105 # https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
rliterman@0 106 #poetry.lock
rliterman@0 107
rliterman@0 108 # pdm
rliterman@0 109 # Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
rliterman@0 110 #pdm.lock
rliterman@0 111 # pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
rliterman@0 112 # in version control.
rliterman@0 113 # https://pdm.fming.dev/#use-with-ide
rliterman@0 114 .pdm.toml
rliterman@0 115
rliterman@0 116 # PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
rliterman@0 117 __pypackages__/
rliterman@0 118
rliterman@0 119 # Celery stuff
rliterman@0 120 celerybeat-schedule
rliterman@0 121 celerybeat.pid
rliterman@0 122
rliterman@0 123 # SageMath parsed files
rliterman@0 124 *.sage.py
rliterman@0 125
rliterman@0 126 # Environments
rliterman@0 127 .env
rliterman@0 128 .venv
rliterman@0 129 env/
rliterman@0 130 venv/
rliterman@0 131 ENV/
rliterman@0 132 env.bak/
rliterman@0 133 venv.bak/
rliterman@0 134
rliterman@0 135 # Spyder project settings
rliterman@0 136 .spyderproject
rliterman@0 137 .spyproject
rliterman@0 138
rliterman@0 139 # Rope project settings
rliterman@0 140 .ropeproject
rliterman@0 141
rliterman@0 142 # mkdocs documentation
rliterman@0 143 /site
rliterman@0 144
rliterman@0 145 # mypy
rliterman@0 146 .mypy_cache/
rliterman@0 147 .dmypy.json
rliterman@0 148 dmypy.json
rliterman@0 149
rliterman@0 150 # Pyre type checker
rliterman@0 151 .pyre/
rliterman@0 152
rliterman@0 153 # pytype static type analyzer
rliterman@0 154 .pytype/
rliterman@0 155
rliterman@0 156 # Cython debug symbols
rliterman@0 157 cython_debug/
rliterman@0 158
rliterman@0 159 # PyCharm
rliterman@0 160 # JetBrains specific template is maintained in a separate JetBrains.gitignore that can
rliterman@0 161 # be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
rliterman@0 162 # and can be added to the global gitignore or merged into this file. For a more nuclear
rliterman@0 163 # option (not recommended) you can uncomment the following to ignore the entire idea folder.
rliterman@0 164 #.idea/
rliterman@0 165
rliterman@0 166 ### Python Patch ###
rliterman@0 167 # Poetry local configuration file - https://python-poetry.org/docs/configuration/#local-configuration
rliterman@0 168 poetry.toml
rliterman@0 169
rliterman@0 170 # ruff
rliterman@0 171 .ruff_cache/
rliterman@0 172
rliterman@0 173 # LSP config files
rliterman@0 174 pyrightconfig.json
rliterman@0 175
rliterman@0 176 ### VirtualEnv ###
rliterman@0 177 # Virtualenv
rliterman@0 178 # http://iamzed.com/2009/05/07/a-primer-on-virtualenv/
rliterman@0 179 [Bb]in
rliterman@0 180 [Ii]nclude
rliterman@0 181 [Ll]ib
rliterman@0 182 [Ll]ib64
rliterman@0 183 [Ll]ocal
rliterman@0 184 [Ss]cripts
rliterman@0 185 pyvenv.cfg
rliterman@0 186 pip-selfcheck.json
rliterman@0 187
rliterman@0 188 ### VisualStudioCode ###
rliterman@0 189 .vscode/*
rliterman@0 190 !.vscode/settings.json
rliterman@0 191 !.vscode/tasks.json
rliterman@0 192 !.vscode/launch.json
rliterman@0 193 !.vscode/extensions.json
rliterman@0 194 !.vscode/*.code-snippets
rliterman@0 195
rliterman@0 196 # Local History for Visual Studio Code
rliterman@0 197 .history/
rliterman@0 198
rliterman@0 199 # Built Visual Studio Code Extensions
rliterman@0 200 *.vsix
rliterman@0 201
rliterman@0 202 ### VisualStudioCode Patch ###
rliterman@0 203 # Ignore all local history of files
rliterman@0 204 .history
rliterman@0 205 .ionide
rliterman@0 206
rliterman@0 207 # End of https://www.toptal.com/developers/gitignore/api/python,visualstudiocode,virtualenv
rliterman@0 208
rliterman@0 209 #Nextflow
rliterman@0 210 .nextflow*
rliterman@0 211 work/