Mercurial > repos > rliterman > csp2

comparison CSP2/subworkflows/fetchData/main.nf @ 12:00aa43a565d1

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"planemo upload"
author rliterman
date Tue, 03 Dec 2024 10:06:35 -0500
parents 0dee732cfad2
children 0d775868ee62
comparison
equal deleted inserted replaced
11:e222ab521d70 12:00aa43a565d1
17 assembly_log = file("${log_directory}/Assembly_Data.tsv") 17 assembly_log = file("${log_directory}/Assembly_Data.tsv")
18 user_snpdiffs_list = file("${log_directory}/Imported_SNPDiffs.txt") 18 user_snpdiffs_list = file("${log_directory}/Imported_SNPDiffs.txt")
19 findReads = file("${projectDir}/bin/fetchReads.py") 19 findReads = file("${projectDir}/bin/fetchReads.py")
20 userSNPDiffs = file("${projectDir}/bin/userSNPDiffs.py") 20 userSNPDiffs = file("${projectDir}/bin/userSNPDiffs.py")
21 21
22 // Set SKESA cores to 5 or fewer 22 // Set SKESA cores to 4 or fewer
23 skesa_cpus = (params.cores as Integer) >= 4 ? 4 : (params.cores as Integer) 23 skesa_cpus = (params.cores as Integer) >= 4 ? 4 : (params.cores as Integer)
24 24
25 workflow { 25 workflow {
26 main: 26 main:
27 input_data = fetchData() 27 input_data = fetchData()