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comparison CSP2/subworkflows/fetchData/main.nf @ 2:0dee732cfad2

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"planemo upload"
author rliterman
date Mon, 02 Dec 2024 11:43:07 -0500
parents 01431fa12065
children 00aa43a565d1
comparison
equal deleted inserted replaced
1:9df7494b1398 2:0dee732cfad2
18 user_snpdiffs_list = file("${log_directory}/Imported_SNPDiffs.txt") 18 user_snpdiffs_list = file("${log_directory}/Imported_SNPDiffs.txt")
19 findReads = file("${projectDir}/bin/fetchReads.py") 19 findReads = file("${projectDir}/bin/fetchReads.py")
20 userSNPDiffs = file("${projectDir}/bin/userSNPDiffs.py") 20 userSNPDiffs = file("${projectDir}/bin/userSNPDiffs.py")
21 21
22 // Set SKESA cores to 5 or fewer 22 // Set SKESA cores to 5 or fewer
23 skesa_cpus = (params.cores as Integer) >= 5 ? 5 : (params.cores as Integer) 23 skesa_cpus = (params.cores as Integer) >= 4 ? 4 : (params.cores as Integer)
24 24
25 workflow { 25 workflow {
26 main: 26 main:
27 input_data = fetchData() 27 input_data = fetchData()
28 query_data = input_data.query_data 28 query_data = input_data.query_data