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comparison csp2_screen.xml @ 67:0e9998148a16

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"planemo upload"
author rliterman
date Thu, 19 Dec 2024 18:42:33 -0500
parents 90e29c1ddeca
children
comparison
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66:90e29c1ddeca 67:0e9998148a16
85 </command> 85 </command>
86 <inputs> 86 <inputs>
87 <conditional name="query_fasta"> 87 <conditional name="query_fasta">
88 <param name="query_fasta_select" type="select" label="Get query assemblies from a collection or your history"> 88 <param name="query_fasta_select" type="select" label="Get query assemblies from a collection or your history">
89 <option value="none" selected="true">Do not provide query assemblies</option> 89 <option value="none" selected="true">Do not provide query assemblies</option>
90 <option value="collection">Query assemblies from a collection_type</option> 90 <option value="collection">Query assemblies from a FASTA collection</option>
91 <option value="history">Query assemblies from your history</option> 91 <option value="history">Query assemblies from your history</option>
92 </param> 92 </param>
93 <when value="none"> 93 <when value="none">
94 </when> 94 </when>
95 <when value="collection"> 95 <when value="collection">
101 </conditional> 101 </conditional>
102 102
103 <conditional name="ref_fasta"> 103 <conditional name="ref_fasta">
104 <param name="ref_fasta_select" type="select" label="Get reference assemblies from a collection or your history"> 104 <param name="ref_fasta_select" type="select" label="Get reference assemblies from a collection or your history">
105 <option value="none" selected="true">Do not provide reference assemblies</option> 105 <option value="none" selected="true">Do not provide reference assemblies</option>
106 <option value="collection">Reference assemblies from a collection_type</option> 106 <option value="collection">Reference assemblies from a FASTA collection</option>
107 <option value="history">Reference assemblies from your history</option> 107 <option value="history">Reference assemblies from your history</option>
108 </param> 108 </param>
109 <when value="none"> 109 <when value="none">
110 </when> 110 </when>
111 <when value="collection"> 111 <when value="collection">
116 </when> 116 </when>
117 </conditional> 117 </conditional>
118 <conditional name="query_reads"> 118 <conditional name="query_reads">
119 <param name="query_reads_select" type="select" label="Get query reads from a paired-end collection or your history"> 119 <param name="query_reads_select" type="select" label="Get query reads from a paired-end collection or your history">
120 <option value="none" selected="true">Do not provide query reads</option> 120 <option value="none" selected="true">Do not provide query reads</option>
121 <option value="collection">Query reads from a collection_type</option> 121 <option value="collection">Paired-end query reads from a collection</option>
122 <option value="history">Query reads from your history</option> 122 <option value="history">Query reads from your history</option>
123 </param> 123 </param>
124 <when value="none"> 124 <when value="none">
125 </when> 125 </when>
126 <when value="collection"> 126 <when value="collection">
132 </conditional> 132 </conditional>
133 133
134 <conditional name="ref_reads"> 134 <conditional name="ref_reads">
135 <param name="ref_reads_select" type="select" label="Get reference reads from a paired-end collection or your history"> 135 <param name="ref_reads_select" type="select" label="Get reference reads from a paired-end collection or your history">
136 <option value="none" selected="true">Do not provide reference reads</option> 136 <option value="none" selected="true">Do not provide reference reads</option>
137 <option value="collection">Refrence reads from a collection_type</option> 137 <option value="collection">Paired-end reference reads from a collection_type</option>
138 <option value="history">Refrence reads from your history</option> 138 <option value="history">Reference reads from your history</option>
139 </param> 139 </param>
140 <when value="none"> 140 <when value="none">
141 </when> 141 </when>
142 <when value="collection"> 142 <when value="collection">
143 <param label="Refrence Reads Collection" name="coll" type="data_collection" format="fastq,fastqsanger,fastq.gz,fastqsanger.gz,fastq.bz2,fastqsanger.bz2" collection_type="list:paired" /> 143 <param label="Refrence Reads Collection" name="coll" type="data_collection" format="fastq,fastqsanger,fastq.gz,fastqsanger.gz,fastq.bz2,fastqsanger.bz2" collection_type="list:paired" />