Mercurial > repos > rliterman > csp2
comparison CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/mummer-3.23/scripts/Makefile @ 69:33d812a61356
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
| author | jpayne |
|---|---|
| date | Tue, 18 Mar 2025 17:55:14 -0400 |
| parents | |
| children |
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| 67:0e9998148a16 | 69:33d812a61356 |
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| 1 #-- Imported variables from top level makefile | |
| 2 # BIN_DIR AUX_BIN_DIR CXX CC CFLAGS CXXFLAGS LDFLAGS | |
| 3 | |
| 4 ifndef BIN_DIR | |
| 5 BIN_DIR := $(CURDIR) | |
| 6 endif | |
| 7 ifndef AUX_BIN_DIR | |
| 8 AUX_BIN_DIR := $(CURDIR) | |
| 9 endif | |
| 10 ifndef SCRIPT_DIR | |
| 11 SCRIPT_DIR := $(CURDIR) | |
| 12 endif | |
| 13 | |
| 14 SCRIPT_DIR := $(CURDIR) | |
| 15 SED := $(filter /%,$(shell /bin/sh -c 'type sed')) | |
| 16 CSH := $(filter /%,$(shell /bin/sh -c 'type csh')) | |
| 17 PERL := $(filter /%,$(shell /bin/sh -c 'type perl')) | |
| 18 VPATH := $(BIN_DIR) | |
| 19 | |
| 20 ALL := exact-tandems mapview mummerplot nucmer promer \ | |
| 21 run-mummer1 run-mummer3 nucmer2xfig dnadiff | |
| 22 | |
| 23 #-- PHONY rules --# | |
| 24 .PHONY: all clean | |
| 25 | |
| 26 | |
| 27 all: $(ALL) | |
| 28 | |
| 29 | |
| 30 clean: | |
| 31 rm -f *~ | |
| 32 cd $(BIN_DIR); rm -f $(ALL) | |
| 33 | |
| 34 | |
| 35 | |
| 36 | |
| 37 #-- not so PHONY rules --# | |
| 38 exact-tandems: exact-tandems.csh | |
| 39 $(SED) -e 's?__CSH_PATH?$(CSH)?g' \ | |
| 40 -e 's?__BIN_DIR?$(BIN_DIR)?g' \ | |
| 41 -e 's?__SCRIPT_DIR?$(SCRIPT_DIR)?g' \ | |
| 42 exact-tandems.csh > $(BIN_DIR)/exact-tandems | |
| 43 chmod 755 $(BIN_DIR)/exact-tandems | |
| 44 | |
| 45 mapview: mapview.pl | |
| 46 $(SED) -e 's?__PERL_PATH?$(PERL)?g' \ | |
| 47 -e 's?__SCRIPT_DIR?$(SCRIPT_DIR)?g' \ | |
| 48 mapview.pl > $(BIN_DIR)/mapview | |
| 49 chmod 755 $(BIN_DIR)/mapview | |
| 50 | |
| 51 mummerplot: mummerplot.pl Foundation.pm | |
| 52 $(SED) -e 's?__PERL_PATH?$(PERL)?g' \ | |
| 53 -e 's?__SCRIPT_DIR?$(SCRIPT_DIR)?g' \ | |
| 54 -e 's?__BIN_DIR?$(BIN_DIR)?g' \ | |
| 55 mummerplot.pl > $(BIN_DIR)/mummerplot | |
| 56 chmod 755 $(BIN_DIR)/mummerplot | |
| 57 | |
| 58 dnadiff: dnadiff.pl Foundation.pm | |
| 59 $(SED) -e 's?__PERL_PATH?$(PERL)?g' \ | |
| 60 -e 's?__SCRIPT_DIR?$(SCRIPT_DIR)?g' \ | |
| 61 -e 's?__BIN_DIR?$(BIN_DIR)?g' \ | |
| 62 dnadiff.pl > $(BIN_DIR)/dnadiff | |
| 63 chmod 755 $(BIN_DIR)/dnadiff | |
| 64 | |
| 65 nucmer: nucmer.pl Foundation.pm | |
| 66 $(SED) -e 's?__PERL_PATH?$(PERL)?g' \ | |
| 67 -e 's?__SCRIPT_DIR?$(SCRIPT_DIR)?g' \ | |
| 68 -e 's?__AUX_BIN_DIR?$(AUX_BIN_DIR)?g' \ | |
| 69 -e 's?__BIN_DIR?$(BIN_DIR)?g' \ | |
| 70 nucmer.pl > $(BIN_DIR)/nucmer | |
| 71 chmod 755 $(BIN_DIR)/nucmer | |
| 72 | |
| 73 promer: promer.pl Foundation.pm | |
| 74 $(SED) -e 's?__PERL_PATH?$(PERL)?g' \ | |
| 75 -e 's?__SCRIPT_DIR?$(SCRIPT_DIR)?g' \ | |
| 76 -e 's?__AUX_BIN_DIR?$(AUX_BIN_DIR)?g' \ | |
| 77 -e 's?__BIN_DIR?$(BIN_DIR)?g' \ | |
| 78 promer.pl > $(BIN_DIR)/promer | |
| 79 chmod 755 $(BIN_DIR)/promer | |
| 80 | |
| 81 run-mummer1: run-mummer1.csh | |
| 82 $(SED) -e 's?__CSH_PATH?$(CSH)?g' \ | |
| 83 -e 's?__BIN_DIR?$(BIN_DIR)?g' \ | |
| 84 run-mummer1.csh > $(BIN_DIR)/run-mummer1 | |
| 85 chmod 755 $(BIN_DIR)/run-mummer1 | |
| 86 | |
| 87 run-mummer3: run-mummer3.csh | |
| 88 $(SED) -e 's?__CSH_PATH?$(CSH)?g' \ | |
| 89 -e 's?__BIN_DIR?$(BIN_DIR)?g' \ | |
| 90 run-mummer3.csh > $(BIN_DIR)/run-mummer3 | |
| 91 chmod 755 $(BIN_DIR)/run-mummer3 | |
| 92 | |
| 93 nucmer2xfig: nucmer2xfig.pl | |
| 94 $(SED) -e 's?__PERL_PATH?$(PERL)?g' \ | |
| 95 nucmer2xfig.pl > $(BIN_DIR)/nucmer2xfig | |
| 96 chmod 755 $(BIN_DIR)/nucmer2xfig |