Mercurial > repos > rliterman > csp2
comparison CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/lib/python3.8/site-packages/pybedtools/stats.py @ 68:5028fdace37b
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
| author | jpayne |
|---|---|
| date | Tue, 18 Mar 2025 16:23:26 -0400 |
| parents | |
| children |
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| 67:0e9998148a16 | 68:5028fdace37b |
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| 1 import multiprocessing | |
| 2 from . import helpers | |
| 3 import pybedtools | |
| 4 | |
| 5 | |
| 6 def random_jaccard(x, y, genome_fn, shuffle_kwargs, jaccard_kwargs): | |
| 7 z = x.shuffle(g=genome_fn, **shuffle_kwargs).sort() | |
| 8 result = z.jaccard(y, **jaccard_kwargs) | |
| 9 helpers.close_or_delete(z) | |
| 10 return result | |
| 11 | |
| 12 | |
| 13 def random_intersection(x, y, genome_fn, shuffle_kwargs, intersect_kwargs): | |
| 14 z = x.shuffle(g=genome_fn, **shuffle_kwargs) | |
| 15 zz = z.intersect(y, stream=True, **intersect_kwargs) | |
| 16 result = len(zz) | |
| 17 helpers.close_or_delete(z, zz) | |
| 18 return result | |
| 19 | |
| 20 | |
| 21 def random_intersection_bp(x, y, genome_fn, shuffle_kwargs, intersect_kwargs): | |
| 22 z = x.shuffle(g=genome_fn, **shuffle_kwargs) | |
| 23 zz = z.intersect(y, stream=True, **intersect_kwargs) | |
| 24 result = sum(len(i) for i in zz) | |
| 25 helpers.close_or_delete(z, zz) | |
| 26 return result |