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planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
author jpayne
date Tue, 18 Mar 2025 16:23:26 -0400
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1 Metadata-Version: 2.1
2 Name: pysam
3 Version: 0.23.0
4 Summary: Package for reading, manipulating, and writing genomic data
5 Home-page: https://github.com/pysam-developers/pysam
6 Author: Andreas Heger
7 Author-email: Andreas Heger <andreas.heger@gmail.com>
8 License: MIT License
9 Project-URL: Documentation, https://pysam.readthedocs.io/
10 Project-URL: Release notes, https://pysam.readthedocs.io/en/stable/release.html
11 Platform: POSIX
12 Platform: UNIX
13 Platform: MacOS
14 Classifier: Development Status :: 4 - Beta
15 Classifier: Intended Audience :: Science/Research
16 Classifier: Intended Audience :: Developers
17 Classifier: License :: OSI Approved
18 Classifier: Programming Language :: Python
19 Classifier: Topic :: Software Development
20 Classifier: Topic :: Scientific/Engineering
21 Classifier: Operating System :: POSIX
22 Classifier: Operating System :: Unix
23 Classifier: Operating System :: MacOS
24 Requires-Python: >=3.6
25 Description-Content-Type: text/x-rst
26 License-File: COPYING
27 License-File: AUTHORS
28
29 pysam --- a Python package for reading, manipulating, and writing
30 genomic data sets.
31
32 pysam is a lightweight wrapper of the HTSlib API and provides facilities
33 to read and write SAM/BAM/CRAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files
34 as well as access to the command-line functionality of samtools and bcftools.
35 The module supports compression and random access through indexing.
36
37 This module provides a low-level wrapper around HTSlib's C API using Cython
38 and a high-level API for convenient access to the data within standard genomic
39 file formats.