Mercurial > repos > rliterman > csp2

comparison CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/lib/python3.8/site-packages/pysam/libcsamfile.pyx @ 68:5028fdace37b

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planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
author jpayne
date Tue, 18 Mar 2025 16:23:26 -0400
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67:0e9998148a16 68:5028fdace37b
1 # cython: embedsignature=True
2 # cython: profile=True
3 # adds doc-strings for sphinx
4 import tempfile
5 import os
6 import sys
7 import types
8 import itertools
9 import struct
10 import ctypes
11 import collections
12 import re
13 import platform
14 import warnings
15 from cpython cimport PyErr_SetString, \
16 PyBytes_Check, \
17 PyUnicode_Check, \
18 PyBytes_FromStringAndSize
19
20 from pysam.libcalignmentfile cimport AlignmentFile, AlignedSegment
21
22
23 cdef class Samfile(AlignmentFile):
24 '''Deprecated alternative for :class:`~pysam.AlignmentFile`
25
26 Added for backwards compatibility with pysam <= 0.8.0
27 '''
28 pass
29
30
31 cdef class AlignedRead(AlignedSegment):
32 '''Deprecated alternative for :class:`~pysam.AlignedSegment`
33
34 Added for backwards compatibility with pysam <= 0.8.0
35 '''
36 pass
37
38
39 __all__ = ['Samfile', 'AlignedRead']
40
41