Mercurial > repos > rliterman > csp2
comparison CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/share/man/man1/mash.1 @ 68:5028fdace37b
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
| author | jpayne |
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| date | Tue, 18 Mar 2025 16:23:26 -0400 |
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| 67:0e9998148a16 | 68:5028fdace37b |
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| 1 '\" t | |
| 2 .\" Title: mash | |
| 3 .\" Author: [see the "AUTHOR(S)" section] | |
| 4 .\" Generator: Asciidoctor 2.0.10 | |
| 5 .\" Date: 2019-12-13 | |
| 6 .\" Manual: \ \& | |
| 7 .\" Source: \ \& | |
| 8 .\" Language: English | |
| 9 .\" | |
| 10 .TH "MASH" "1" "2019-12-13" "\ \&" "\ \&" | |
| 11 .ie \n(.g .ds Aq \(aq | |
| 12 .el .ds Aq ' | |
| 13 .ss \n[.ss] 0 | |
| 14 .nh | |
| 15 .ad l | |
| 16 .de URL | |
| 17 \fI\\$2\fP <\\$1>\\$3 | |
| 18 .. | |
| 19 .als MTO URL | |
| 20 .if \n[.g] \{\ | |
| 21 . mso www.tmac | |
| 22 . am URL | |
| 23 . ad l | |
| 24 . . | |
| 25 . am MTO | |
| 26 . ad l | |
| 27 . . | |
| 28 . LINKSTYLE blue R < > | |
| 29 .\} | |
| 30 .SH "NAME" | |
| 31 mash \- fast genome and metagenome distance estimation using MinHash | |
| 32 .SH "SYNOPSIS" | |
| 33 .sp | |
| 34 \fBmash\fP <command> [options] [arguments ...] | |
| 35 .SH "DESCRIPTION" | |
| 36 .sp | |
| 37 \fBmash\fP is the main executable for the \fBMash\fP software. The actual | |
| 38 functionality is provided by the subtools (\(aqcommands\(aq): | |
| 39 .SS "Commands" | |
| 40 .sp | |
| 41 \fBbounds\fP | |
| 42 .RS 4 | |
| 43 Print a table of Mash error bounds. | |
| 44 .RE | |
| 45 .sp | |
| 46 \fBdist\fP | |
| 47 .RS 4 | |
| 48 Estimate the distance of query sequences to references. | |
| 49 .RE | |
| 50 .sp | |
| 51 \fBinfo\fP | |
| 52 .RS 4 | |
| 53 Display information about sketch files. | |
| 54 .RE | |
| 55 .sp | |
| 56 \fBpaste\fP | |
| 57 .RS 4 | |
| 58 Create a single sketch file from multiple sketch files. | |
| 59 .RE | |
| 60 .sp | |
| 61 \fBscreen\fP | |
| 62 .RS 4 | |
| 63 Determine whether query sequences are within a larger pool of sequences. | |
| 64 .RE | |
| 65 .sp | |
| 66 \fBsketch\fP | |
| 67 .RS 4 | |
| 68 Create sketches (reduced representations for fast operations). | |
| 69 .RE | |
| 70 .sp | |
| 71 \fBtriangle\fP | |
| 72 .RS 4 | |
| 73 Estimate a lower\-triangular distance matrix. | |
| 74 .RE | |
| 75 .SH "SEE ALSO" | |
| 76 .sp | |
| 77 mash\-dist(1), mash\-info(1), mash\-paste(1), mash\-screen(1), mash\-sketch(1), mash\-triangle(1) |