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comparison csp2_snp.xml @ 60:5378cd1e3a39

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"planemo upload"
author rliterman
date Thu, 19 Dec 2024 12:31:39 -0500
parents d322910e773c
children e7470d424809
comparison
equal deleted inserted replaced
59:d322910e773c 60:5378cd1e3a39
30 #if "$query_reads.query_reads_select" == 'collection' 30 #if "$query_reads.query_reads_select" == 'collection'
31 #set query_reads_forward=$query_reads.coll.forward 31 #set query_reads_forward=$query_reads.coll.forward
32 #set query_reads_reverse=$query_reads.coll.reverse 32 #set query_reads_reverse=$query_reads.coll.reverse
33 #elseif "$query_reads.query_reads_select" == 'history' 33 #elseif "$query_reads.query_reads_select" == 'history'
34 #set query_reads_forward=$query_reads.list 34 #set query_reads_forward=$query_reads.list
35 #set query_reads_reverse=""
36 #end if 35 #end if
37 36
38 #if "$ref_reads.ref_reads_select" == 'collection' 37 #if "$ref_reads.ref_reads_select" == 'collection'
39 #set ref_reads_forward=$ref_reads.coll.forward 38 #set ref_reads_forward=$ref_reads.coll.forward
40 #set ref_reads_reverse=$ref_reads.coll.reverse 39 #set ref_reads_reverse=$ref_reads.coll.reverse
41 #elseif "$ref_reads.ref_reads_select" == 'history' 40 #elseif "$ref_reads.ref_reads_select" == 'history'
42 #set ref_reads_forward=$ref_reads.list 41 #set ref_reads_forward=$ref_reads.list
43 #set ref_reads_reverse=""
44 #end if 42 #end if
45 43
46 if [[ "$query_fasta.query_fasta_select" == "none" ]]; then 44 if [[ "$query_fasta.query_fasta_select" == "none" ]]; then
47 export QUERY_FASTA_ARG=""; 45 export QUERY_FASTA_ARG="";
48 else 46 else