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comparison CSP2/subworkflows/fetchData/main.nf @ 25:5c609acba34e

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"planemo upload"
author rliterman
date Tue, 03 Dec 2024 15:56:32 -0500
parents 75070dbe67b1
children 792274118b2e
comparison
equal deleted inserted replaced
24:75070dbe67b1 25:5c609acba34e
19 findReads = file("${projectDir}/bin/fetchReads.py") 19 findReads = file("${projectDir}/bin/fetchReads.py")
20 userSNPDiffs = file("${projectDir}/bin/userSNPDiffs.py") 20 userSNPDiffs = file("${projectDir}/bin/userSNPDiffs.py")
21 21
22 // Set SKESA cores to 4 or fewer 22 // Set SKESA cores to 4 or fewer
23 skesa_cpus = (params.cores as Integer) >= 4 ? 4 : params.cores as Integer 23 skesa_cpus = (params.cores as Integer) >= 4 ? 4 : params.cores as Integer
24 println "params.cores: ${params.cores}"
25 println "skesa_cpus: ${skesa_cpus}"
24 26
25 workflow { 27 workflow {
26 main: 28 main:
27 input_data = fetchData() 29 input_data = fetchData()
28 query_data = input_data.query_data 30 query_data = input_data.query_data