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comparison csp2_screen.xml @ 3:757b7dcd0ee6

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"planemo upload"
author rliterman
date Mon, 02 Dec 2024 15:44:29 -0500
parents 9df7494b1398
children 1f407d5f5899
comparison
equal deleted inserted replaced
2:0dee732cfad2 3:757b7dcd0ee6
1 <tool id="csp2-screen" name="CSP2 (Screening Mode)" version="0.9.7"> 1 <tool id="csp2-screen" name="CSP2 (Screening Mode)" version="0.9.7">
2 <description>Screen query assemblies against reference assemblies</description> 2 <description>Screen query assemblies against reference assemblies</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="24.10.1">nextflow</requirement> 4 <requirement type="package" version="24.10.1">nextflow</requirement>
5 <requirement type="package" version="2.0.2">micromamba</requirement> 5 <requirement type="package" version="1.5.8">micromamba</requirement>
6 </requirements> 6 </requirements>
7 <version_command>nextflow -version</version_command>
7 <command detect_errors="aggressive"><![CDATA[ 8 <command detect_errors="aggressive"><![CDATA[
8 export CSP2_DIR=\$PWD; 9 export CSP2_DIR=\$PWD;
9 mkdir -p \$CSP2_DIR/queries \$CSP2_DIR/references; 10 mkdir -p \$CSP2_DIR/queries \$CSP2_DIR/references;
10 11
11 if [ -n "$query_fasta" ] && [ "$query_fasta" != "None" ]; then 12 if [ -n "$query_fasta" ] && [ "$query_fasta" != "None" ]; then