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comparison CSP2/subworkflows/fetchData/main.nf @ 29:b6ec322b1f05

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"planemo upload"
author rliterman
date Wed, 04 Dec 2024 16:02:07 -0500
parents 893a6993efe3
children
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28:893a6993efe3 29:b6ec322b1f05
18 user_snpdiffs_list = file("${log_directory}/Imported_SNPDiffs.txt") 18 user_snpdiffs_list = file("${log_directory}/Imported_SNPDiffs.txt")
19 findReads = file("${projectDir}/bin/fetchReads.py") 19 findReads = file("${projectDir}/bin/fetchReads.py")
20 userSNPDiffs = file("${projectDir}/bin/userSNPDiffs.py") 20 userSNPDiffs = file("${projectDir}/bin/userSNPDiffs.py")
21 21
22 // Set SKESA cores to 4 or fewer 22 // Set SKESA cores to 4 or fewer
23 //skesa_cpus = (params.cores as Integer) >= 4 ? 4 : params.cores as Integer 23 skesa_cpus = (params.cores as Integer) >= 4 ? 4 : params.cores as Integer
24 skesa_cpus = 1
25 24
26 workflow { 25 workflow {
27 main: 26 main:
28 input_data = fetchData() 27 input_data = fetchData()
29 query_data = input_data.query_data 28 query_data = input_data.query_data