diff CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/include/mash/CommandTaxScreen.h @ 69:33d812a61356

planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
author jpayne
date Tue, 18 Mar 2025 17:55:14 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/include/mash/CommandTaxScreen.h	Tue Mar 18 17:55:14 2025 -0400
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+// Copyright © 2015, Battelle National Biodefense Institute (BNBI);
+// all rights reserved. Authored by: Brian Ondov, Todd Treangen,
+// Sergey Koren, and Adam Phillippy
+//
+// See the LICENSE.txt file included with this software for license information.
+
+#ifndef INCLUDED_CommandTaxScreen
+#define INCLUDED_CommandTaxScreen
+
+#include "Command.h"
+#include "Sketch.h"
+#include <list>
+#include <string>
+#include <vector>
+#include <atomic>
+#include <unordered_set>
+#include <unordered_map>
+#include "MinHashHeap.h"
+#include "CommandScreen.h"
+
+
+using std::string;
+using std::cerr;
+using std::cout;
+using std::endl;
+using std::list;
+using std::string;
+using std::unordered_map;
+using std::unordered_set;
+using std::vector;
+
+
+namespace mash {
+
+using TaxID = uint64_t;
+
+class CommandTaxScreen : public Command
+{
+public:
+    
+    CommandTaxScreen();
+    
+    int run() const; // override
+
+private:
+	
+	struct Reference
+	{
+		Reference(uint64_t amerCountNew, std::string nameNew, std::string commentNew)
+		: amerCount(amerCountNew), name(nameNew), comment(commentNew) {}
+		
+		uint64_t amerCount;
+		std::string name;
+		std::string comment;
+	};
+};
+
+} // namespace mash
+
+#endif