--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/include/mash/CommandTriangle.h	Tue Mar 18 17:55:14 2025 -0400
@@ -0,0 +1,75 @@
+// Copyright © 2015, Battelle National Biodefense Institute (BNBI);
+// all rights reserved. Authored by: Brian Ondov, Todd Treangen,
+// Sergey Koren, and Adam Phillippy
+//
+// See the LICENSE.txt file included with this software for license information.
+
+#ifndef INCLUDED_CommandTriangle
+#define INCLUDED_CommandTriangle
+
+#include "Command.h"
+#include "CommandDistance.h"
+#include "Sketch.h"
+
+namespace mash {
+
+class CommandTriangle : public Command
+{
+public:
+    
+    struct TriangleInput
+    {
+        TriangleInput(const Sketch & sketchNew, uint64_t indexNew, const Sketch::Parameters & parametersNew, double maxDistanceNew, double maxPValueNew)
+            :
+            sketch(sketchNew),
+            index(indexNew),
+            parameters(parametersNew),
+            maxDistance(maxDistanceNew),
+            maxPValue(maxPValueNew)
+            {}
+        
+        const Sketch & sketch;
+        uint64_t index;
+        const Sketch::Parameters & parameters;
+        double maxDistance;
+        double maxPValue;
+    };
+    
+    struct TriangleOutput
+    {
+        TriangleOutput(const Sketch & sketchNew, uint64_t indexNew)
+            :
+            sketch(sketchNew),
+            index(indexNew)
+        {
+            pairs = new CommandDistance::CompareOutput::PairOutput[index];
+        }
+        
+        ~TriangleOutput()
+        {
+            delete [] pairs;
+        }
+        
+        const Sketch & sketch;
+        uint64_t index;
+        
+        CommandDistance::CompareOutput::PairOutput * pairs;
+    };
+    
+    CommandTriangle();
+    
+    int run() const; // override
+    
+private:
+    
+    double pValueMax;
+    bool comment;
+    
+    void writeOutput(TriangleOutput * output, bool comment, bool edge, double & pValuePeakToSet) const;
+};
+
+CommandTriangle::TriangleOutput * compare(CommandTriangle::TriangleInput * input);
+
+} // namespace mash
+
+#endif