Mercurial > repos > rliterman > csp2
diff CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/lib/python3.8/site-packages/pysam/libcutils.pyi @ 69:33d812a61356
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
author | jpayne |
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date | Tue, 18 Mar 2025 17:55:14 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/lib/python3.8/site-packages/pysam/libcutils.pyi Tue Mar 18 17:55:14 2025 -0400 @@ -0,0 +1,28 @@ +from array import array +from typing import Iterable, Optional, Tuple, Union + +def get_encoding_error_handler() -> str: ... +def set_encoding_error_handler(name: str) -> str: ... +def _pysam_dispatch( + collection: str, + method: str, + args: Optional[Iterable[str]], + catch_stdout: bool = ..., + is_usage: bool = ..., + save_stdout: Optional[str] = ..., +) -> Tuple[int, Union[bytes, str], Union[bytes, str]]: ... +def parse_region( + contig: Optional[str] = ..., + start: Optional[int] = ..., + stop: Optional[int] = ..., + region: Optional[str] = ..., + reference: Optional[str] = ..., + end: Optional[int] = ..., +) -> Tuple[str, int, int]: ... +def qualitystring_to_array( + input_str: Optional[str], offset: int = ... +) -> Optional[array]: ... +def array_to_qualitystring(qualities: array, offset: int = ...) -> Optional[str]: ... +def qualities_to_qualitystring( + qualities: Union[array, Iterable[str]], offset: int = ... +) -> Optional[str]: ...