diff CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/lib/python3.8/site-packages/pysam/libcutils.pyi @ 69:33d812a61356

planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
author jpayne
date Tue, 18 Mar 2025 17:55:14 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/lib/python3.8/site-packages/pysam/libcutils.pyi	Tue Mar 18 17:55:14 2025 -0400
@@ -0,0 +1,28 @@
+from array import array
+from typing import Iterable, Optional, Tuple, Union
+
+def get_encoding_error_handler() -> str: ...
+def set_encoding_error_handler(name: str) -> str: ...
+def _pysam_dispatch(
+    collection: str,
+    method: str,
+    args: Optional[Iterable[str]],
+    catch_stdout: bool = ...,
+    is_usage: bool = ...,
+    save_stdout: Optional[str] = ...,
+) -> Tuple[int, Union[bytes, str], Union[bytes, str]]: ...
+def parse_region(
+    contig: Optional[str] = ...,
+    start: Optional[int] = ...,
+    stop: Optional[int] = ...,
+    region: Optional[str] = ...,
+    reference: Optional[str] = ...,
+    end: Optional[int] = ...,
+) -> Tuple[str, int, int]: ...
+def qualitystring_to_array(
+    input_str: Optional[str], offset: int = ...
+) -> Optional[array]: ...
+def array_to_qualitystring(qualities: array, offset: int = ...) -> Optional[str]: ...
+def qualities_to_qualitystring(
+    qualities: Union[array, Iterable[str]], offset: int = ...
+) -> Optional[str]: ...