--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/mummer-3.23/docs/differences.README	Tue Mar 18 17:55:14 2025 -0400
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+-- RUNTIME COMPARISON --
+Compute mum candidates of length >= 100.
+Result is identical for both programs.
+ 
+			mummer3:		mummer2:
+
+Ecoli K12/
+Ecoli 0157: 		14 sec/66 MB		17 sec/133 MB
+
+Ecoli 0157/
+Ecoli K12: 		14 sec/77 MB		17 sec/155 MB
+
+S cerevisae/
+S pombe			42 sec/172 MB		50 sec/348 MB
+
+S pombe/
+S cerevisae		41 sec/176 MB		52 sec/358 MB
+
+
+
+-- CORRECTNESS COMPARISON --
+Consider the two files
+
+> N25
+NNNNNNNNNNNNNNNNNNNNNNNNN
+
+and nn.query
+
+> n18
+nnnnnnnnnnnnnnnnnn
+
+------------------ First example:---------------
+mummer3 -l 5 Data/nn.query Data/nn.subject
+> N25
+       1         1        18
+       1         2        18
+       1         3        18
+       1         4        18
+       1         5        18
+       1         6        18
+       1         7        18
+       1         8        18
+
+mummer2 -l 5 Data/nn.query Data/nn.subject
+> N25
+       1         1        18
+
+I think the result of mummer3 is correct, since the 
+string n18 occurs exactly once in n18. It occurs 8
+times in N25. hence 8 MUM-candidates are reported.
+
+---- second example -----
+
+mummer3.x -l 5 Data/nn.subject Data/nn.query
+> n18
+
+Bigmum.sh  -l 5 Data/nn.subject Data/nn.query
+> n18
+New string is suffix of reference string
+       8         1        18
+
+Here n18 occurs several times in the N25, hence it is 
+not a MUM-candidates and so nothing is to be reported.
+Thus the result of mummer3 is correct.