--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/mummer-3.23/exact-tandems	Tue Mar 18 17:55:14 2025 -0400
@@ -0,0 +1,23 @@
+#! -f
+#
+# Find exact tandem repeats in specified file involving an
+# exact duplicate of at least the specified length
+
+set filename = $1
+set matchlen = $2
+
+set bindir = /mnt/c/Users/crash/Documents/BobLiterman/CSP2_Galaxy/CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/mummer-3.23
+set scriptdir = /mnt/c/Users/crash/Documents/BobLiterman/CSP2_Galaxy/CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/opt/mummer-3.23/scripts
+
+if  ($filename == '' || $matchlen == '')  then
+    echo "USAGE:  $0 <file> <min-match-len>"
+    exit -1
+endif
+
+echo "Finding matches"
+$bindir/repeat-match -t -n $matchlen $filename | tail +3 > $$.tmp.matches
+if  ($status != 0)  exit -1
+
+echo "Tandem repeats"
+sort -k1n -k2n $$.tmp.matches | awk -f $scriptdir/tandem-repeat.awk
+rm -f $$.tmp.matches