--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/lib/python3.8/site-packages/pybedtools/cbedtools.pxd	Tue Mar 18 16:23:26 2025 -0400
@@ -0,0 +1,88 @@
+from cpython cimport bool
+from libcpp.vector cimport vector
+from libcpp.string cimport string
+from cython.operator cimport dereference as deref
+
+
+
+
+
+
+"""
+Create Cython definitions for the Interval API defined in Interval.h
+"""
+cdef extern from "bedFile.h":
+    cdef enum BedLineStatus:
+        BED_MALFORMED = -2
+        BED_INVALID = -1
+        BED_HEADER = 0
+        BED_BLANK = 1
+        BED_VALID = 2
+
+    ctypedef unsigned int   CHRPOS
+    ctypedef bint BOOL
+
+    cdef cppclass BED:
+        string chrom
+        CHRPOS start
+        CHRPOS end
+        string name
+        string score
+        string strand
+        CHRPOS o_start  # the start of an overlap with another interval
+        CHRPOS o_end    # the end of an overlap with another interval
+        unsigned short bedType
+        string file_type
+        BedLineStatus status
+        vector[string] fields
+
+        # constructors
+        BED()
+        BED(string chrom, CHRPOS start, CHRPOS end, string name,
+             string score, string strand, vector[string] fields,
+             CHRPOS o_start, CHRPOS o_end,
+             unsigned short bedType, string file_type, BedLineStatus status)
+
+        BED(string chrom, CHRPOS start, CHRPOS end)
+        BED(string chrom, CHRPOS start, CHRPOS end, string strand)
+        BED(string chrom, CHRPOS start, CHRPOS end, string name,
+             string score, string strand, vector[string] fields)
+
+        # methods
+        string reportBed()
+
+
+    cdef cppclass BedFile:
+        BedFile(string)
+        int Open()
+        void Rewind()
+        void Seek(unsigned long offset)
+        void Close()
+        BED  GetNextBed()
+        void loadBedFileIntoMap()
+
+        ### "all" ###
+        # this version doesn't care if the strands match.
+        vector[BED] FindOverlapsPerBin(BED bed, float overlapFraction)
+        # if forceStrand is true, require that the strands match,
+        vector[BED] FindOverlapsPerBin(BED bed, bool forceStrand, float overlapFraction)
+
+        ### "any" ###
+        int FindAnyOverlapsPerBin(BED bed, float overlapFraction)
+        # if forceStrand is true, require that the strands match,
+        int FindAnyOverlapsPerBin(BED bed, bool forceStrand, float overlapFraction)
+
+
+        ### "count" ###
+        int CountOverlapsPerBin(BED bed, float overlapFraction)
+        # if forceStrand is true, require that the strands match,
+        int CountOverlapsPerBin(BED bed, bool forceStrand, float overlapFraction)
+        string file_type
+        bint _typeIsKnown
+
+
+cdef class Interval:
+    cdef BED *_bed
+    cdef object _attrs
+    cpdef append(Interval self, object value)
+    cpdef deparse_attrs(Interval self)