diff CSP2/conf/profiles.config @ 33:6f4e6377ba64

"planemo upload"
author rliterman
date Thu, 05 Dec 2024 12:32:42 -0500
parents a12953834916
children f6cd698b6f62
line wrap: on
line diff
--- a/CSP2/conf/profiles.config	Thu Dec 05 10:47:01 2024 -0500
+++ b/CSP2/conf/profiles.config	Thu Dec 05 12:32:42 2024 -0500
@@ -79,13 +79,13 @@
         params.trim_name = ""
     }
     
-    csp2_galaxy {
+    csp2_galaxy1 {
         conda.enabled = true
         conda.useMicromamba = true
         conda.cacheDir = "${projectDir}/CSP2_env"
         process.conda = "${projectDir}/conf/CSP2.yaml"
         
-        process.queue = "q8cpu"
+        process.queue = "ondemand-small"
 
         executor.$slurm.exitReadTimeout = 120000
 
@@ -99,4 +99,25 @@
         params.mash_module = ""
         params.trim_name = ""
     }
+    
+    csp2_galaxy2 {
+        conda.enabled = true
+        conda.useMicromamba = true
+        conda.cacheDir = "${projectDir}/CSP2_env"
+        process.conda = "${projectDir}/conf/CSP2.yaml"
+        
+        process.queue = "q8cpu"
+
+        executor.$slurm.exitReadTimeout = 120000
+
+        process.executor = 'slurm'
+        params.cores = 8
+        params.python_module = ""
+        params.mummer_module = ""
+        params.skesa_module = ""
+        params.bedtools_module = ""
+        params.bbtools_module = ""
+        params.mash_module = ""
+        params.trim_name = ""
+    }
 }