Mercurial > repos > rliterman > csp2
diff CSP2/conf/profiles.config @ 33:6f4e6377ba64
"planemo upload"
author | rliterman |
---|---|
date | Thu, 05 Dec 2024 12:32:42 -0500 |
parents | a12953834916 |
children | f6cd698b6f62 |
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--- a/CSP2/conf/profiles.config Thu Dec 05 10:47:01 2024 -0500 +++ b/CSP2/conf/profiles.config Thu Dec 05 12:32:42 2024 -0500 @@ -79,13 +79,13 @@ params.trim_name = "" } - csp2_galaxy { + csp2_galaxy1 { conda.enabled = true conda.useMicromamba = true conda.cacheDir = "${projectDir}/CSP2_env" process.conda = "${projectDir}/conf/CSP2.yaml" - process.queue = "q8cpu" + process.queue = "ondemand-small" executor.$slurm.exitReadTimeout = 120000 @@ -99,4 +99,25 @@ params.mash_module = "" params.trim_name = "" } + + csp2_galaxy2 { + conda.enabled = true + conda.useMicromamba = true + conda.cacheDir = "${projectDir}/CSP2_env" + process.conda = "${projectDir}/conf/CSP2.yaml" + + process.queue = "q8cpu" + + executor.$slurm.exitReadTimeout = 120000 + + process.executor = 'slurm' + params.cores = 8 + params.python_module = "" + params.mummer_module = "" + params.skesa_module = "" + params.bedtools_module = "" + params.bbtools_module = "" + params.mash_module = "" + params.trim_name = "" + } }