Mercurial > repos > rliterman > csp2

diff csp_screen.xml @ 27:792274118b2e

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"planemo upload"
author rliterman
date Wed, 04 Dec 2024 12:50:59 -0500
parents 6f85641ecd48
children
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--- a/csp_screen.xml	Tue Dec 03 16:35:35 2024 -0500
+++ b/csp_screen.xml	Wed Dec 04 12:50:59 2024 -0500
@@ -58,7 +58,7 @@
 fi;
 
 		nextflow run ${__tool_directory__}/CSP2/CSP2.nf -profile csp2_galaxy --cores $cores --runmode screen \$QUERY_FASTA_ARG \$REF_FASTA_ARG \$QUERY_READS_ARG \$REF_READS_ARG \$REF_ID_ARG \$TRIM_ARG --readext $readext --forward $forward --reverse $reverse --ref_readext $readext --ref_forward $forward --ref_reverse $reverse --min_cov $min_cov --min_iden $min_iden --min_len $min_len --ref_edge $ref_edge --query_edge $query_edge --dwin $dwin --wsnps $wsnps --cores 8 --out \$CSP2_DIR/CSP2_Screen_Output > Nextflow_Log.txt 2>&1;
-
+		sleep 5;
 		zip -r work.zip work;
 		zip -r csp2.zip CSP2_Screen_Output;
 	]]>