--- a/CSP2/subworkflows/fetchData/main.nf	Wed Dec 04 12:50:59 2024 -0500
+++ b/CSP2/subworkflows/fetchData/main.nf	Wed Dec 04 13:48:13 2024 -0500
@@ -20,7 +20,8 @@
 userSNPDiffs = file("${projectDir}/bin/userSNPDiffs.py")
 
 // Set SKESA cores to 4 or fewer
-skesa_cpus = (params.cores as Integer) >= 4 ? 4 : params.cores as Integer
+//skesa_cpus = (params.cores as Integer) >= 4 ? 4 : params.cores as Integer
+skesa_cpus = 1
 
 workflow {
     main:
@@ -499,8 +500,10 @@
     assembled_data = assembly_output.map{it->tuple(it[0],it[3])}
 }
 process skesaAssemble{
-    //label 'skesaMem'
-  
+    label 'skesaMem'
+
+    cpus = skesa_cpus
+    
     input:
     tuple val(sample_name),val(read_type),val(read_location)