--- a/csp2_snp.xml	Thu Dec 19 10:43:45 2024 -0500
+++ b/csp2_snp.xml	Thu Dec 19 10:56:32 2024 -0500
@@ -16,7 +16,7 @@
         #end for
         export QUERY_FASTA_ARG="--fasta ./queries";
 else
-        #for query in $query_fasta.elements:
+        #for query in $query_fasta.coll.elements:
                 ln -sf ${query} ./queries/${query.element_identifier};
         #end for
         export QUERY_FASTA_ARG="--fasta ./queries";
@@ -30,7 +30,7 @@
         #end for
         export REF_FASTA_ARG="--ref_fasta ./references";
 else
-        #for ref in $ref_fasta.elements:
+        #for ref in $ref_fasta.coll.elements:
                 ln -sf ${ref} ./references/${ref.element_identifier};
         #end for
         export REF_FASTA_ARG="--ref_fasta ./references";