Mercurial > repos > rliterman > csp2

diff csp2_screen.xml @ 38:ee512a230a1e

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"planemo upload"
author rliterman
date Wed, 11 Dec 2024 12:04:20 -0500
parents f62b9bcf7cf3
children 93393808f415
line wrap: on
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--- a/csp2_screen.xml	Fri Dec 06 08:08:22 2024 -0500
+++ b/csp2_screen.xml	Wed Dec 11 12:04:20 2024 -0500
@@ -58,6 +58,7 @@
 fi;
 
 nextflow run ${__tool_directory__}/CSP2/CSP2.nf -profile csp2_galaxy --runmode screen \$QUERY_FASTA_ARG \$REF_FASTA_ARG \$QUERY_READS_ARG \$REF_READS_ARG \$REF_ID_ARG \$TRIM_ARG --readext $readext --forward $forward --reverse $reverse --ref_readext $readext --ref_forward $forward --ref_reverse $reverse --min_cov $min_cov --min_iden $min_iden --min_len $min_len --ref_edge $ref_edge --query_edge $query_edge --dwin $dwin --wsnps $wsnps --out \$CSP2_DIR/CSP2_Screen_Output > Nextflow_Log.txt 2>&1;
+sleep 15;
 ]]>
         </command>
         <inputs>