Mercurial > repos > rliterman > csp2
view test-data/Screening_Results.tsv @ 51:2a36d0ebb408
"planemo upload"
author | rliterman |
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date | Fri, 13 Dec 2024 08:49:33 -0500 |
parents | 01431fa12065 |
children |
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Query_ID Reference_ID Screen_Category CSP2_Screen_SNPs Query_Percent_Aligned Reference_Percent_Aligned Query_Contigs Query_Bases Reference_Contigs Reference_Bases Raw_SNPs Purged_Length Purged_Identity Purged_LengthIdentity Purged_Invalid Purged_Indel Purged_Duplicate Purged_Het Purged_Density Filtered_Query_Edge Filtered_Ref_Edge Filtered_Both_Edge Kmer_Similarity Shared_Kmers Query_Unique_Kmers Reference_Unique_Kmers MUMmer_gSNPs MUMmer_gIndels Sample_L Sample_B Pass 38 99.91 99.83 61 4627094 40 4631086 39 0 0 1 0 9 0 0 0 0 0 0 99.84 4615284 2254 5301 38 3 Sample_M Sample_A Pass 28 98.38 97.55 805 4587464 50 4626313 29 0 0 0 0 9 0 0 0 1 0 0 96.83 4516541 46764 100989 29 2 Sample_G Sample_B Pass 52 99.76 98.77 254 4584986 40 4631086 55 0 0 0 0 19 0 0 0 2 0 1 98.85 4569549 2164 51036 55 1 Sample_O Sample_A Pass 34 99.85 99.79 83 4623444 50 4626313 37 0 0 0 0 16 0 0 3 0 0 0 99.76 4609834 3266 7696 34 1 Sample_K Sample_B Pass 39 99.85 99.88 38 4632444 40 4631086 43 0 0 1 0 3 0 0 2 0 0 1 99.86 4617072 3058 3513 41 3 Sample_F Sample_B Pass 49 99.76 98.72 275 4582721 40 4631086 51 0 0 0 0 1 0 0 0 2 0 0 98.81 4567726 1947 52859 50 1 Sample_C Sample_A Pass 18 99.00 99.90 49 4668385 50 4626313 18 0 0 0 0 2 0 0 0 0 0 0 99.06 4616466 42691 1064 18 2 Sample_C Sample_B Pass 42 99.06 99.85 49 4668385 40 4631086 45 0 0 0 0 2 0 0 2 0 0 1 99.02 4617061 42096 3524 43 2 Sample_D Sample_B Pass 34 99.91 99.84 55 4627990 40 4631086 37 0 0 0 0 5 0 0 2 0 0 1 99.88 4616725 1840 3860 35 3 Sample_G Sample_A Pass 29 99.74 98.85 254 4584986 50 4626313 30 0 0 0 0 1 0 0 0 1 0 0 98.92 4569771 1942 47759 30 1 Sample_I Sample_A Pass 12 99.00 99.90 47 4668267 50 4626313 12 0 0 0 0 2 0 0 0 0 0 0 99.06 4616398 42755 1132 12 2 Sample_H Sample_A Pass 25 97.73 99.90 54 4728796 50 4626313 25 0 0 0 0 8 0 0 0 0 0 0 97.81 4615794 101815 1736 25 1 Sample_J Sample_B Pass 37 97.23 99.32 170 4730789 40 4631086 41 1 0 0 0 2 0 0 2 1 0 0 96.92 4598642 124346 21943 39 2 Sample_F Sample_A Pass 28 99.74 98.80 275 4582721 50 4626313 29 0 0 0 0 1 0 0 0 1 0 0 98.9 4568089 1584 49441 29 1 Sample_I Sample_B Pass 36 99.05 99.84 47 4668267 40 4631086 39 0 0 0 0 2 0 0 2 0 0 1 99.01 4616829 42324 3756 37 2 Sample_H Sample_B Pass 51 97.84 99.90 54 4728796 40 4631086 54 0 0 0 0 8 0 0 2 0 0 1 97.8 4617153 100456 3432 52 1 Sample_K Sample_A Pass 15 99.75 99.88 38 4632444 50 4626313 15 0 0 0 0 15 0 0 0 0 0 0 99.85 4615265 4865 2265 15 3 Week_42_Reads Sample_A Pass 32 99.65 98.26 372 4561747 50 4626313 37 4 0 0 0 3 0 0 0 2 0 0 98.47 4548160 1222 69370 33 1 Sample_E Sample_A Pass 10 99.87 99.83 84 4624417 50 4626313 10 0 0 0 0 5 0 0 0 0 0 0 99.88 4613770 1601 3760 10 3 Sample_E Sample_B Pass 34 99.89 99.74 84 4624417 40 4631086 37 0 0 1 0 5 0 0 2 0 0 0 99.8 4613430 1941 7155 34 3 Sample_N Sample_B Pass 41 99.05 99.82 63 4667287 40 4631086 43 0 0 0 0 2 0 0 2 0 0 0 98.98 4615134 42156 5451 41 2 Sample_L Sample_A Pass 9 99.86 99.87 61 4627094 50 4626313 9 0 0 0 0 9 0 0 0 0 0 0 99.89 4614975 2563 2555 9 3 Week_42_Reads Sample_B Pass 26 99.65 98.15 372 4561747 40 4631086 33 0 0 5 0 3 0 0 2 1 0 0 98.41 4548172 1210 72413 28 1 Sample_O Sample_B Pass 29 99.92 99.76 83 4623444 40 4631086 36 0 0 0 0 10 0 0 6 0 0 1 99.76 4611388 1712 9197 31 1 Sample_N Sample_A Pass 17 98.99 99.87 63 4667287 50 4626313 17 0 0 0 0 2 0 0 0 0 0 0 99.02 4614530 42760 3000 17 2 Sample_D Sample_A Pass 10 99.85 99.89 55 4627990 50 4626313 10 0 0 0 0 11 0 0 0 0 0 0 99.92 4616091 2474 1439 10 3 Sample_J Sample_A Pass 17 97.23 99.43 170 4730789 50 4626313 17 0 0 0 0 2 0 0 0 0 0 0 97.01 4599459 123529 18071 17 2 Sample_M Sample_B Pass 46 98.16 97.24 805 4587464 40 4631086 52 1 0 0 0 2 0 0 0 5 0 0 96.74 4515883 47422 104702 52 2