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view CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/include/mash/MinHashHeap.h @ 69:33d812a61356
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
author | jpayne |
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date | Tue, 18 Mar 2025 17:55:14 -0400 |
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#ifndef HashHeapCounted_h #define HashHeapCounted_h #include "HashList.h" #include "HashPriorityQueue.h" #include "HashSet.h" #include <math.h> #include "bloom_filter.hpp" class MinHashHeap { public: MinHashHeap(bool use64New, uint64_t cardinalityMaximumNew, uint64_t multiplicityMinimumNew = 1, uint64_t memoryBoundBytes = 0); ~MinHashHeap(); void computeStats(); void clear(); double estimateMultiplicity() const; double estimateSetSize() const; void toCounts(std::vector<uint32_t> & counts) const; void toHashList(HashList & hashList) const; void tryInsert(hash_u hash); private: bool use64; HashSet hashes; HashPriorityQueue hashesQueue; HashSet hashesPending; HashPriorityQueue hashesQueuePending; uint64_t cardinalityMaximum; uint64_t multiplicityMinimum; uint64_t multiplicitySum; bloom_filter * bloomFilter; uint64_t kmersTotal; uint64_t kmersUsed; }; inline double MinHashHeap::estimateMultiplicity() const {return hashes.size() ? (double)multiplicitySum / hashes.size() : 0;} inline double MinHashHeap::estimateSetSize() const {return hashes.size() ? pow(2.0, use64 ? 64.0 : 32.0) * (double)hashes.size() / (use64 ? (double)hashesQueue.top().hash64 : (double)hashesQueue.top().hash32) : 0;} inline void MinHashHeap::toHashList(HashList & hashList) const {hashes.toHashList(hashList);} inline void MinHashHeap::toCounts(std::vector<uint32_t> & counts) const {hashes.toCounts(counts);} #endif