Mercurial > repos > rliterman > csp2
view CSP2/CSP2_env/env-d9b9114564458d9d-741b3de822f2aaca6c6caa4325c4afce/lib/python3.8/site-packages/pysam/libcbcf.c @ 69:33d812a61356
planemo upload commit 2e9511a184a1ca667c7be0c6321a36dc4e3d116d
| author | jpayne |
|---|---|
| date | Tue, 18 Mar 2025 17:55:14 -0400 |
| parents | |
| children |
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/* Generated by Cython 3.0.11 */ /* BEGIN: Cython Metadata { "distutils": { "define_macros": [ [ "BUILDING_WHEEL", null ] ], "depends": [ "/project/htslib/htslib/bgzf.h", "/project/htslib/htslib/cram.h", "/project/htslib/htslib/faidx.h", "/project/htslib/htslib/hfile.h", "/project/htslib/htslib/hts.h", "/project/htslib/htslib/kstring.h", "/project/htslib/htslib/sam.h", "/project/htslib/htslib/tbx.h", "/project/htslib/htslib/vcf.h", "/project/htslib/htslib/vcfutils.h", "/project/pysam/htslib_util.h" ], "extra_compile_args": [ "-Wno-unused", "-Wno-strict-prototypes", "-Wno-sign-compare", "-Wno-error=declaration-after-statement" ], "extra_link_args": [ "-Wl,-rpath,$ORIGIN" ], "include_dirs": [ "pysam", "/project/pysam", "/project/htslib", "/project/samtools", "/project/samtools/lz4", "/project/bcftools", "/project" ], "language": "c", "libraries": [ "z", "lzma", "bz2", "z", "m", "curl", "crypto", "chtslib.cpython-37m-x86_64-linux-gnu", "cutils.cpython-37m-x86_64-linux-gnu" ], "library_dirs": [ "/project/pysam", "/project", "build/lib.linux-x86_64-cpython-37/pysam", "build/lib.linux-x86_64-cpython-37/pysam", "build/lib.linux-x86_64-cpython-37/pysam", "build/lib.linux-x86_64-cpython-37/pysam", "build/lib.linux-x86_64-cpython-37/pysam", "build/lib.linux-x86_64-cpython-37/pysam", "build/lib.linux-x86_64-cpython-37/pysam", "build/lib.linux-x86_64-cpython-37/pysam", "build/lib.linux-x86_64-cpython-37/pysam", "build/lib.linux-x86_64-cpython-37/pysam" ], "name": "pysam.libcbcf", "sources": [ "pysam/libcbcf.pyx" ] }, "module_name": "pysam.libcbcf" } END: Cython Metadata */ #ifndef PY_SSIZE_T_CLEAN #define PY_SSIZE_T_CLEAN #endif /* PY_SSIZE_T_CLEAN */ #if defined(CYTHON_LIMITED_API) && 0 #ifndef Py_LIMITED_API #if CYTHON_LIMITED_API+0 > 0x03030000 #define Py_LIMITED_API CYTHON_LIMITED_API #else #define Py_LIMITED_API 0x03030000 #endif #endif #endif #include "Python.h" #if PY_MAJOR_VERSION <= 2 #define PyDict_GetItemWithError _PyDict_GetItemWithError #endif #if PY_MAJOR_VERSION >= 3 #define __Pyx_PyFloat_FromString(obj) PyFloat_FromString(obj) #else #define __Pyx_PyFloat_FromString(obj) PyFloat_FromString(obj, NULL) #endif #if (PY_VERSION_HEX < 0x030700b1 || (CYTHON_COMPILING_IN_PYPY && PYPY_VERSION_NUM < 0x07030600)) && !defined(PyContextVar_Get) #define PyContextVar_Get(var, d, v) ((d) ? ((void)(var), Py_INCREF(d), (v)[0] = (d), 0) : ((v)[0] = NULL, 0) ) #endif #ifndef Py_PYTHON_H #error Python headers needed to compile C extensions, please install development version of Python. #elif PY_VERSION_HEX < 0x02070000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03030000) #error Cython requires Python 2.7+ or Python 3.3+. #else #if defined(CYTHON_LIMITED_API) && CYTHON_LIMITED_API #define __PYX_EXTRA_ABI_MODULE_NAME "limited" #else #define __PYX_EXTRA_ABI_MODULE_NAME "" #endif #define CYTHON_ABI "3_0_11" __PYX_EXTRA_ABI_MODULE_NAME #define __PYX_ABI_MODULE_NAME "_cython_" CYTHON_ABI #define __PYX_TYPE_MODULE_PREFIX __PYX_ABI_MODULE_NAME "." #define CYTHON_HEX_VERSION 0x03000BF0 #define CYTHON_FUTURE_DIVISION 1 #include <stddef.h> #ifndef offsetof #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) #endif #if !defined(_WIN32) && !defined(WIN32) && !defined(MS_WINDOWS) #ifndef __stdcall #define __stdcall #endif #ifndef __cdecl #define __cdecl #endif #ifndef __fastcall #define __fastcall #endif #endif #ifndef DL_IMPORT #define DL_IMPORT(t) t #endif #ifndef DL_EXPORT #define DL_EXPORT(t) t #endif #define __PYX_COMMA , #ifndef HAVE_LONG_LONG #define HAVE_LONG_LONG #endif #ifndef PY_LONG_LONG #define PY_LONG_LONG LONG_LONG #endif #ifndef Py_HUGE_VAL #define Py_HUGE_VAL HUGE_VAL #endif #define __PYX_LIMITED_VERSION_HEX PY_VERSION_HEX #if defined(GRAALVM_PYTHON) /* For very preliminary testing purposes. Most variables are set the same as PyPy. The existence of this section does not imply that anything works or is even tested */ #define CYTHON_COMPILING_IN_PYPY 0 #define CYTHON_COMPILING_IN_CPYTHON 0 #define CYTHON_COMPILING_IN_LIMITED_API 0 #define CYTHON_COMPILING_IN_GRAAL 1 #define CYTHON_COMPILING_IN_NOGIL 0 #undef CYTHON_USE_TYPE_SLOTS #define CYTHON_USE_TYPE_SLOTS 0 #undef CYTHON_USE_TYPE_SPECS #define CYTHON_USE_TYPE_SPECS 0 #undef CYTHON_USE_PYTYPE_LOOKUP #define CYTHON_USE_PYTYPE_LOOKUP 0 #if PY_VERSION_HEX < 0x03050000 #undef CYTHON_USE_ASYNC_SLOTS #define CYTHON_USE_ASYNC_SLOTS 0 #elif !defined(CYTHON_USE_ASYNC_SLOTS) #define CYTHON_USE_ASYNC_SLOTS 1 #endif #undef CYTHON_USE_PYLIST_INTERNALS #define CYTHON_USE_PYLIST_INTERNALS 0 #undef CYTHON_USE_UNICODE_INTERNALS #define CYTHON_USE_UNICODE_INTERNALS 0 #undef CYTHON_USE_UNICODE_WRITER #define CYTHON_USE_UNICODE_WRITER 0 #undef CYTHON_USE_PYLONG_INTERNALS #define CYTHON_USE_PYLONG_INTERNALS 0 #undef CYTHON_AVOID_BORROWED_REFS #define CYTHON_AVOID_BORROWED_REFS 1 #undef CYTHON_ASSUME_SAFE_MACROS #define CYTHON_ASSUME_SAFE_MACROS 0 #undef CYTHON_UNPACK_METHODS #define CYTHON_UNPACK_METHODS 0 #undef CYTHON_FAST_THREAD_STATE #define CYTHON_FAST_THREAD_STATE 0 #undef CYTHON_FAST_GIL #define CYTHON_FAST_GIL 0 #undef CYTHON_METH_FASTCALL #define CYTHON_METH_FASTCALL 0 #undef CYTHON_FAST_PYCALL #define CYTHON_FAST_PYCALL 0 #ifndef CYTHON_PEP487_INIT_SUBCLASS #define CYTHON_PEP487_INIT_SUBCLASS (PY_MAJOR_VERSION >= 3) #endif #undef CYTHON_PEP489_MULTI_PHASE_INIT #define CYTHON_PEP489_MULTI_PHASE_INIT 1 #undef CYTHON_USE_MODULE_STATE #define CYTHON_USE_MODULE_STATE 0 #undef CYTHON_USE_TP_FINALIZE #define CYTHON_USE_TP_FINALIZE 0 #undef CYTHON_USE_DICT_VERSIONS #define CYTHON_USE_DICT_VERSIONS 0 #undef CYTHON_USE_EXC_INFO_STACK #define CYTHON_USE_EXC_INFO_STACK 0 #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC #define CYTHON_UPDATE_DESCRIPTOR_DOC 0 #endif #undef CYTHON_USE_FREELISTS #define CYTHON_USE_FREELISTS 0 #elif defined(PYPY_VERSION) #define CYTHON_COMPILING_IN_PYPY 1 #define CYTHON_COMPILING_IN_CPYTHON 0 #define CYTHON_COMPILING_IN_LIMITED_API 0 #define CYTHON_COMPILING_IN_GRAAL 0 #define CYTHON_COMPILING_IN_NOGIL 0 #undef CYTHON_USE_TYPE_SLOTS #define CYTHON_USE_TYPE_SLOTS 0 #ifndef CYTHON_USE_TYPE_SPECS #define CYTHON_USE_TYPE_SPECS 0 #endif #undef CYTHON_USE_PYTYPE_LOOKUP #define CYTHON_USE_PYTYPE_LOOKUP 0 #if PY_VERSION_HEX < 0x03050000 #undef CYTHON_USE_ASYNC_SLOTS #define CYTHON_USE_ASYNC_SLOTS 0 #elif !defined(CYTHON_USE_ASYNC_SLOTS) #define CYTHON_USE_ASYNC_SLOTS 1 #endif #undef CYTHON_USE_PYLIST_INTERNALS #define CYTHON_USE_PYLIST_INTERNALS 0 #undef CYTHON_USE_UNICODE_INTERNALS #define CYTHON_USE_UNICODE_INTERNALS 0 #undef CYTHON_USE_UNICODE_WRITER #define CYTHON_USE_UNICODE_WRITER 0 #undef CYTHON_USE_PYLONG_INTERNALS #define CYTHON_USE_PYLONG_INTERNALS 0 #undef CYTHON_AVOID_BORROWED_REFS #define CYTHON_AVOID_BORROWED_REFS 1 #undef CYTHON_ASSUME_SAFE_MACROS #define CYTHON_ASSUME_SAFE_MACROS 0 #undef CYTHON_UNPACK_METHODS #define CYTHON_UNPACK_METHODS 0 #undef CYTHON_FAST_THREAD_STATE #define CYTHON_FAST_THREAD_STATE 0 #undef CYTHON_FAST_GIL #define CYTHON_FAST_GIL 0 #undef CYTHON_METH_FASTCALL #define CYTHON_METH_FASTCALL 0 #undef CYTHON_FAST_PYCALL #define CYTHON_FAST_PYCALL 0 #ifndef CYTHON_PEP487_INIT_SUBCLASS #define CYTHON_PEP487_INIT_SUBCLASS (PY_MAJOR_VERSION >= 3) #endif #if PY_VERSION_HEX < 0x03090000 #undef CYTHON_PEP489_MULTI_PHASE_INIT #define CYTHON_PEP489_MULTI_PHASE_INIT 0 #elif !defined(CYTHON_PEP489_MULTI_PHASE_INIT) #define CYTHON_PEP489_MULTI_PHASE_INIT 1 #endif #undef CYTHON_USE_MODULE_STATE #define CYTHON_USE_MODULE_STATE 0 #undef CYTHON_USE_TP_FINALIZE #define CYTHON_USE_TP_FINALIZE (PY_VERSION_HEX >= 0x030400a1 && PYPY_VERSION_NUM >= 0x07030C00) #undef CYTHON_USE_DICT_VERSIONS #define CYTHON_USE_DICT_VERSIONS 0 #undef CYTHON_USE_EXC_INFO_STACK #define CYTHON_USE_EXC_INFO_STACK 0 #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC #define CYTHON_UPDATE_DESCRIPTOR_DOC 0 #endif #undef CYTHON_USE_FREELISTS #define CYTHON_USE_FREELISTS 0 #elif defined(CYTHON_LIMITED_API) #ifdef Py_LIMITED_API #undef __PYX_LIMITED_VERSION_HEX #define __PYX_LIMITED_VERSION_HEX Py_LIMITED_API #endif #define CYTHON_COMPILING_IN_PYPY 0 #define CYTHON_COMPILING_IN_CPYTHON 0 #define CYTHON_COMPILING_IN_LIMITED_API 1 #define CYTHON_COMPILING_IN_GRAAL 0 #define CYTHON_COMPILING_IN_NOGIL 0 #undef CYTHON_CLINE_IN_TRACEBACK #define CYTHON_CLINE_IN_TRACEBACK 0 #undef CYTHON_USE_TYPE_SLOTS #define CYTHON_USE_TYPE_SLOTS 0 #undef CYTHON_USE_TYPE_SPECS #define CYTHON_USE_TYPE_SPECS 1 #undef CYTHON_USE_PYTYPE_LOOKUP #define CYTHON_USE_PYTYPE_LOOKUP 0 #undef CYTHON_USE_ASYNC_SLOTS #define CYTHON_USE_ASYNC_SLOTS 0 #undef CYTHON_USE_PYLIST_INTERNALS #define CYTHON_USE_PYLIST_INTERNALS 0 #undef CYTHON_USE_UNICODE_INTERNALS #define CYTHON_USE_UNICODE_INTERNALS 0 #ifndef CYTHON_USE_UNICODE_WRITER #define CYTHON_USE_UNICODE_WRITER 0 #endif #undef CYTHON_USE_PYLONG_INTERNALS #define CYTHON_USE_PYLONG_INTERNALS 0 #ifndef CYTHON_AVOID_BORROWED_REFS #define CYTHON_AVOID_BORROWED_REFS 0 #endif #undef CYTHON_ASSUME_SAFE_MACROS #define CYTHON_ASSUME_SAFE_MACROS 0 #undef CYTHON_UNPACK_METHODS #define CYTHON_UNPACK_METHODS 0 #undef CYTHON_FAST_THREAD_STATE #define CYTHON_FAST_THREAD_STATE 0 #undef CYTHON_FAST_GIL #define CYTHON_FAST_GIL 0 #undef CYTHON_METH_FASTCALL #define CYTHON_METH_FASTCALL 0 #undef CYTHON_FAST_PYCALL #define CYTHON_FAST_PYCALL 0 #ifndef CYTHON_PEP487_INIT_SUBCLASS #define CYTHON_PEP487_INIT_SUBCLASS 1 #endif #undef CYTHON_PEP489_MULTI_PHASE_INIT #define CYTHON_PEP489_MULTI_PHASE_INIT 0 #undef CYTHON_USE_MODULE_STATE #define CYTHON_USE_MODULE_STATE 1 #ifndef CYTHON_USE_TP_FINALIZE #define CYTHON_USE_TP_FINALIZE 0 #endif #undef CYTHON_USE_DICT_VERSIONS #define CYTHON_USE_DICT_VERSIONS 0 #undef CYTHON_USE_EXC_INFO_STACK #define CYTHON_USE_EXC_INFO_STACK 0 #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC #define CYTHON_UPDATE_DESCRIPTOR_DOC 0 #endif #undef CYTHON_USE_FREELISTS #define CYTHON_USE_FREELISTS 0 #elif defined(Py_GIL_DISABLED) || defined(Py_NOGIL) #define CYTHON_COMPILING_IN_PYPY 0 #define CYTHON_COMPILING_IN_CPYTHON 0 #define CYTHON_COMPILING_IN_LIMITED_API 0 #define CYTHON_COMPILING_IN_GRAAL 0 #define CYTHON_COMPILING_IN_NOGIL 1 #ifndef CYTHON_USE_TYPE_SLOTS #define CYTHON_USE_TYPE_SLOTS 1 #endif #ifndef CYTHON_USE_TYPE_SPECS #define CYTHON_USE_TYPE_SPECS 0 #endif #undef CYTHON_USE_PYTYPE_LOOKUP #define CYTHON_USE_PYTYPE_LOOKUP 0 #ifndef CYTHON_USE_ASYNC_SLOTS #define CYTHON_USE_ASYNC_SLOTS 1 #endif #ifndef CYTHON_USE_PYLONG_INTERNALS #define CYTHON_USE_PYLONG_INTERNALS 0 #endif #undef CYTHON_USE_PYLIST_INTERNALS #define CYTHON_USE_PYLIST_INTERNALS 0 #ifndef CYTHON_USE_UNICODE_INTERNALS #define CYTHON_USE_UNICODE_INTERNALS 1 #endif #undef CYTHON_USE_UNICODE_WRITER #define CYTHON_USE_UNICODE_WRITER 0 #ifndef CYTHON_AVOID_BORROWED_REFS #define CYTHON_AVOID_BORROWED_REFS 0 #endif #ifndef CYTHON_ASSUME_SAFE_MACROS #define CYTHON_ASSUME_SAFE_MACROS 1 #endif #ifndef CYTHON_UNPACK_METHODS #define CYTHON_UNPACK_METHODS 1 #endif #undef CYTHON_FAST_THREAD_STATE #define CYTHON_FAST_THREAD_STATE 0 #undef CYTHON_FAST_GIL #define CYTHON_FAST_GIL 0 #ifndef CYTHON_METH_FASTCALL #define CYTHON_METH_FASTCALL 1 #endif #undef CYTHON_FAST_PYCALL #define CYTHON_FAST_PYCALL 0 #ifndef CYTHON_PEP487_INIT_SUBCLASS #define CYTHON_PEP487_INIT_SUBCLASS 1 #endif #ifndef CYTHON_PEP489_MULTI_PHASE_INIT #define CYTHON_PEP489_MULTI_PHASE_INIT 1 #endif #ifndef CYTHON_USE_MODULE_STATE #define CYTHON_USE_MODULE_STATE 0 #endif #ifndef CYTHON_USE_TP_FINALIZE #define CYTHON_USE_TP_FINALIZE 1 #endif #undef CYTHON_USE_DICT_VERSIONS #define CYTHON_USE_DICT_VERSIONS 0 #undef CYTHON_USE_EXC_INFO_STACK #define CYTHON_USE_EXC_INFO_STACK 0 #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC #define CYTHON_UPDATE_DESCRIPTOR_DOC 1 #endif #ifndef CYTHON_USE_FREELISTS #define CYTHON_USE_FREELISTS 0 #endif #else #define CYTHON_COMPILING_IN_PYPY 0 #define CYTHON_COMPILING_IN_CPYTHON 1 #define CYTHON_COMPILING_IN_LIMITED_API 0 #define CYTHON_COMPILING_IN_GRAAL 0 #define CYTHON_COMPILING_IN_NOGIL 0 #ifndef CYTHON_USE_TYPE_SLOTS #define CYTHON_USE_TYPE_SLOTS 1 #endif #ifndef CYTHON_USE_TYPE_SPECS #define CYTHON_USE_TYPE_SPECS 0 #endif #ifndef CYTHON_USE_PYTYPE_LOOKUP #define CYTHON_USE_PYTYPE_LOOKUP 1 #endif #if PY_MAJOR_VERSION < 3 #undef CYTHON_USE_ASYNC_SLOTS #define CYTHON_USE_ASYNC_SLOTS 0 #elif !defined(CYTHON_USE_ASYNC_SLOTS) #define CYTHON_USE_ASYNC_SLOTS 1 #endif #ifndef CYTHON_USE_PYLONG_INTERNALS #define CYTHON_USE_PYLONG_INTERNALS 1 #endif #ifndef CYTHON_USE_PYLIST_INTERNALS #define CYTHON_USE_PYLIST_INTERNALS 1 #endif #ifndef CYTHON_USE_UNICODE_INTERNALS #define CYTHON_USE_UNICODE_INTERNALS 1 #endif #if PY_VERSION_HEX < 0x030300F0 || PY_VERSION_HEX >= 0x030B00A2 #undef CYTHON_USE_UNICODE_WRITER #define CYTHON_USE_UNICODE_WRITER 0 #elif !defined(CYTHON_USE_UNICODE_WRITER) #define CYTHON_USE_UNICODE_WRITER 1 #endif #ifndef CYTHON_AVOID_BORROWED_REFS #define CYTHON_AVOID_BORROWED_REFS 0 #endif #ifndef CYTHON_ASSUME_SAFE_MACROS #define CYTHON_ASSUME_SAFE_MACROS 1 #endif #ifndef CYTHON_UNPACK_METHODS #define CYTHON_UNPACK_METHODS 1 #endif #ifndef CYTHON_FAST_THREAD_STATE #define CYTHON_FAST_THREAD_STATE 1 #endif #ifndef CYTHON_FAST_GIL #define CYTHON_FAST_GIL (PY_MAJOR_VERSION < 3 || PY_VERSION_HEX >= 0x03060000 && PY_VERSION_HEX < 0x030C00A6) #endif #ifndef CYTHON_METH_FASTCALL #define CYTHON_METH_FASTCALL (PY_VERSION_HEX >= 0x030700A1) #endif #ifndef CYTHON_FAST_PYCALL #define CYTHON_FAST_PYCALL 1 #endif #ifndef CYTHON_PEP487_INIT_SUBCLASS #define CYTHON_PEP487_INIT_SUBCLASS 1 #endif #if PY_VERSION_HEX < 0x03050000 #undef CYTHON_PEP489_MULTI_PHASE_INIT #define CYTHON_PEP489_MULTI_PHASE_INIT 0 #elif !defined(CYTHON_PEP489_MULTI_PHASE_INIT) #define CYTHON_PEP489_MULTI_PHASE_INIT 1 #endif #ifndef CYTHON_USE_MODULE_STATE #define CYTHON_USE_MODULE_STATE 0 #endif #if PY_VERSION_HEX < 0x030400a1 #undef CYTHON_USE_TP_FINALIZE #define CYTHON_USE_TP_FINALIZE 0 #elif !defined(CYTHON_USE_TP_FINALIZE) #define CYTHON_USE_TP_FINALIZE 1 #endif #if PY_VERSION_HEX < 0x030600B1 #undef CYTHON_USE_DICT_VERSIONS #define CYTHON_USE_DICT_VERSIONS 0 #elif !defined(CYTHON_USE_DICT_VERSIONS) #define CYTHON_USE_DICT_VERSIONS (PY_VERSION_HEX < 0x030C00A5) #endif #if PY_VERSION_HEX < 0x030700A3 #undef CYTHON_USE_EXC_INFO_STACK #define CYTHON_USE_EXC_INFO_STACK 0 #elif !defined(CYTHON_USE_EXC_INFO_STACK) #define CYTHON_USE_EXC_INFO_STACK 1 #endif #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC #define CYTHON_UPDATE_DESCRIPTOR_DOC 1 #endif #ifndef CYTHON_USE_FREELISTS #define CYTHON_USE_FREELISTS 1 #endif #endif #if !defined(CYTHON_FAST_PYCCALL) #define CYTHON_FAST_PYCCALL (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1) #endif #if !defined(CYTHON_VECTORCALL) #define CYTHON_VECTORCALL (CYTHON_FAST_PYCCALL && PY_VERSION_HEX >= 0x030800B1) #endif #define CYTHON_BACKPORT_VECTORCALL (CYTHON_METH_FASTCALL && PY_VERSION_HEX < 0x030800B1) #if CYTHON_USE_PYLONG_INTERNALS #if PY_MAJOR_VERSION < 3 #include "longintrepr.h" #endif #undef SHIFT #undef BASE #undef MASK #ifdef SIZEOF_VOID_P enum { __pyx_check_sizeof_voidp = 1 / (int)(SIZEOF_VOID_P == sizeof(void*)) }; #endif #endif #ifndef __has_attribute #define __has_attribute(x) 0 #endif #ifndef __has_cpp_attribute #define __has_cpp_attribute(x) 0 #endif #ifndef CYTHON_RESTRICT #if defined(__GNUC__) #define CYTHON_RESTRICT __restrict__ #elif defined(_MSC_VER) && _MSC_VER >= 1400 #define CYTHON_RESTRICT __restrict #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L #define CYTHON_RESTRICT restrict #else #define CYTHON_RESTRICT #endif #endif #ifndef CYTHON_UNUSED #if defined(__cplusplus) /* for clang __has_cpp_attribute(maybe_unused) is true even before C++17 * but leads to warnings with -pedantic, since it is a C++17 feature */ #if ((defined(_MSVC_LANG) && _MSVC_LANG >= 201703L) || __cplusplus >= 201703L) #if __has_cpp_attribute(maybe_unused) #define CYTHON_UNUSED [[maybe_unused]] #endif #endif #endif #endif #ifndef CYTHON_UNUSED # if defined(__GNUC__) # if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) # define CYTHON_UNUSED __attribute__ ((__unused__)) # else # define CYTHON_UNUSED # endif # elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) # define CYTHON_UNUSED __attribute__ ((__unused__)) # else # define CYTHON_UNUSED # endif #endif #ifndef CYTHON_UNUSED_VAR # if defined(__cplusplus) template<class T> void CYTHON_UNUSED_VAR( const T& ) { } # else # define CYTHON_UNUSED_VAR(x) (void)(x) # endif #endif #ifndef CYTHON_MAYBE_UNUSED_VAR #define CYTHON_MAYBE_UNUSED_VAR(x) CYTHON_UNUSED_VAR(x) #endif #ifndef CYTHON_NCP_UNUSED # if CYTHON_COMPILING_IN_CPYTHON # define CYTHON_NCP_UNUSED # else # define CYTHON_NCP_UNUSED CYTHON_UNUSED # endif #endif #ifndef CYTHON_USE_CPP_STD_MOVE #if defined(__cplusplus) && (\ __cplusplus >= 201103L || (defined(_MSC_VER) && _MSC_VER >= 1600)) #define CYTHON_USE_CPP_STD_MOVE 1 #else #define CYTHON_USE_CPP_STD_MOVE 0 #endif #endif #define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None) #ifdef _MSC_VER #ifndef _MSC_STDINT_H_ #if _MSC_VER < 1300 typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; #else typedef unsigned __int8 uint8_t; typedef unsigned __int16 uint16_t; typedef unsigned __int32 uint32_t; #endif #endif #if _MSC_VER < 1300 #ifdef _WIN64 typedef unsigned long long __pyx_uintptr_t; #else typedef unsigned int __pyx_uintptr_t; #endif #else #ifdef _WIN64 typedef unsigned __int64 __pyx_uintptr_t; #else typedef unsigned __int32 __pyx_uintptr_t; #endif #endif #else #include <stdint.h> typedef uintptr_t __pyx_uintptr_t; #endif #ifndef CYTHON_FALLTHROUGH #if defined(__cplusplus) /* for clang __has_cpp_attribute(fallthrough) is true even before C++17 * but leads to warnings with -pedantic, since it is a C++17 feature */ #if ((defined(_MSVC_LANG) && _MSVC_LANG >= 201703L) || __cplusplus >= 201703L) #if __has_cpp_attribute(fallthrough) #define CYTHON_FALLTHROUGH [[fallthrough]] #endif #endif #ifndef CYTHON_FALLTHROUGH #if __has_cpp_attribute(clang::fallthrough) #define CYTHON_FALLTHROUGH [[clang::fallthrough]] #elif __has_cpp_attribute(gnu::fallthrough) #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] #endif #endif #endif #ifndef CYTHON_FALLTHROUGH #if __has_attribute(fallthrough) #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) #else #define CYTHON_FALLTHROUGH #endif #endif #if defined(__clang__) && defined(__apple_build_version__) #if __apple_build_version__ < 7000000 #undef CYTHON_FALLTHROUGH #define CYTHON_FALLTHROUGH #endif #endif #endif #ifdef __cplusplus template <typename T> struct __PYX_IS_UNSIGNED_IMPL {static const bool value = T(0) < T(-1);}; #define __PYX_IS_UNSIGNED(type) (__PYX_IS_UNSIGNED_IMPL<type>::value) #else #define __PYX_IS_UNSIGNED(type) (((type)-1) > 0) #endif #if CYTHON_COMPILING_IN_PYPY == 1 #define __PYX_NEED_TP_PRINT_SLOT (PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x030A0000) #else #define __PYX_NEED_TP_PRINT_SLOT (PY_VERSION_HEX >= 0x030800b4 && PY_VERSION_HEX < 0x03090000) #endif #define __PYX_REINTERPRET_FUNCION(func_pointer, other_pointer) ((func_pointer)(void(*)(void))(other_pointer)) #ifndef CYTHON_INLINE #if defined(__clang__) #define CYTHON_INLINE __inline__ __attribute__ ((__unused__)) #elif defined(__GNUC__) #define CYTHON_INLINE __inline__ #elif defined(_MSC_VER) #define CYTHON_INLINE __inline #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L #define CYTHON_INLINE inline #else #define CYTHON_INLINE #endif #endif #define __PYX_BUILD_PY_SSIZE_T "n" #define CYTHON_FORMAT_SSIZE_T "z" #if PY_MAJOR_VERSION < 3 #define __Pyx_BUILTIN_MODULE_NAME "__builtin__" #define __Pyx_DefaultClassType PyClass_Type #define __Pyx_PyCode_New(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) #else #define __Pyx_BUILTIN_MODULE_NAME "builtins" #define __Pyx_DefaultClassType PyType_Type #if CYTHON_COMPILING_IN_LIMITED_API static CYTHON_INLINE PyObject* __Pyx_PyCode_New(int a, int p, int k, int l, int s, int f, PyObject *code, PyObject *c, PyObject* n, PyObject *v, PyObject *fv, PyObject *cell, PyObject* fn, PyObject *name, int fline, PyObject *lnos) { PyObject *exception_table = NULL; PyObject *types_module=NULL, *code_type=NULL, *result=NULL; #if __PYX_LIMITED_VERSION_HEX < 0x030B0000 PyObject *version_info; PyObject *py_minor_version = NULL; #endif long minor_version = 0; PyObject *type, *value, *traceback; PyErr_Fetch(&type, &value, &traceback); #if __PYX_LIMITED_VERSION_HEX >= 0x030B0000 minor_version = 11; #else if (!(version_info = PySys_GetObject("version_info"))) goto end; if (!(py_minor_version = PySequence_GetItem(version_info, 1))) goto end; minor_version = PyLong_AsLong(py_minor_version); Py_DECREF(py_minor_version); if (minor_version == -1 && PyErr_Occurred()) goto end; #endif if (!(types_module = PyImport_ImportModule("types"))) goto end; if (!(code_type = PyObject_GetAttrString(types_module, "CodeType"))) goto end; if (minor_version <= 7) { (void)p; result = PyObject_CallFunction(code_type, "iiiiiOOOOOOiOO", a, k, l, s, f, code, c, n, v, fn, name, fline, lnos, fv, cell); } else if (minor_version <= 10) { result = PyObject_CallFunction(code_type, "iiiiiiOOOOOOiOO", a,p, k, l, s, f, code, c, n, v, fn, name, fline, lnos, fv, cell); } else { if (!(exception_table = PyBytes_FromStringAndSize(NULL, 0))) goto end; result = PyObject_CallFunction(code_type, "iiiiiiOOOOOOOiOO", a,p, k, l, s, f, code, c, n, v, fn, name, name, fline, lnos, exception_table, fv, cell); } end: Py_XDECREF(code_type); Py_XDECREF(exception_table); Py_XDECREF(types_module); if (type) { PyErr_Restore(type, value, traceback); } return result; } #ifndef CO_OPTIMIZED #define CO_OPTIMIZED 0x0001 #endif #ifndef CO_NEWLOCALS #define CO_NEWLOCALS 0x0002 #endif #ifndef CO_VARARGS #define CO_VARARGS 0x0004 #endif #ifndef CO_VARKEYWORDS #define CO_VARKEYWORDS 0x0008 #endif #ifndef CO_ASYNC_GENERATOR #define CO_ASYNC_GENERATOR 0x0200 #endif #ifndef CO_GENERATOR #define CO_GENERATOR 0x0020 #endif #ifndef CO_COROUTINE #define CO_COROUTINE 0x0080 #endif #elif PY_VERSION_HEX >= 0x030B0000 static CYTHON_INLINE PyCodeObject* __Pyx_PyCode_New(int a, int p, int k, int l, int s, int f, PyObject *code, PyObject *c, PyObject* n, PyObject *v, PyObject *fv, PyObject *cell, PyObject* fn, PyObject *name, int fline, PyObject *lnos) { PyCodeObject *result; PyObject *empty_bytes = PyBytes_FromStringAndSize("", 0); if (!empty_bytes) return NULL; result = #if PY_VERSION_HEX >= 0x030C0000 PyUnstable_Code_NewWithPosOnlyArgs #else PyCode_NewWithPosOnlyArgs #endif (a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, name, fline, lnos, empty_bytes); Py_DECREF(empty_bytes); return result; } #elif PY_VERSION_HEX >= 0x030800B2 && !CYTHON_COMPILING_IN_PYPY #define __Pyx_PyCode_New(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ PyCode_NewWithPosOnlyArgs(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) #else #define __Pyx_PyCode_New(a, p, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) #endif #endif #if PY_VERSION_HEX >= 0x030900A4 || defined(Py_IS_TYPE) #define __Pyx_IS_TYPE(ob, type) Py_IS_TYPE(ob, type) #else #define __Pyx_IS_TYPE(ob, type) (((const PyObject*)ob)->ob_type == (type)) #endif #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_Is) #define __Pyx_Py_Is(x, y) Py_Is(x, y) #else #define __Pyx_Py_Is(x, y) ((x) == (y)) #endif #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_IsNone) #define __Pyx_Py_IsNone(ob) Py_IsNone(ob) #else #define __Pyx_Py_IsNone(ob) __Pyx_Py_Is((ob), Py_None) #endif #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_IsTrue) #define __Pyx_Py_IsTrue(ob) Py_IsTrue(ob) #else #define __Pyx_Py_IsTrue(ob) __Pyx_Py_Is((ob), Py_True) #endif #if PY_VERSION_HEX >= 0x030A00B1 || defined(Py_IsFalse) #define __Pyx_Py_IsFalse(ob) Py_IsFalse(ob) #else #define __Pyx_Py_IsFalse(ob) __Pyx_Py_Is((ob), Py_False) #endif #define __Pyx_NoneAsNull(obj) (__Pyx_Py_IsNone(obj) ? NULL : (obj)) #if PY_VERSION_HEX >= 0x030900F0 && !CYTHON_COMPILING_IN_PYPY #define __Pyx_PyObject_GC_IsFinalized(o) PyObject_GC_IsFinalized(o) #else #define __Pyx_PyObject_GC_IsFinalized(o) _PyGC_FINALIZED(o) #endif #ifndef CO_COROUTINE #define CO_COROUTINE 0x80 #endif #ifndef CO_ASYNC_GENERATOR #define CO_ASYNC_GENERATOR 0x200 #endif #ifndef Py_TPFLAGS_CHECKTYPES #define Py_TPFLAGS_CHECKTYPES 0 #endif #ifndef Py_TPFLAGS_HAVE_INDEX #define Py_TPFLAGS_HAVE_INDEX 0 #endif #ifndef Py_TPFLAGS_HAVE_NEWBUFFER #define Py_TPFLAGS_HAVE_NEWBUFFER 0 #endif #ifndef Py_TPFLAGS_HAVE_FINALIZE #define Py_TPFLAGS_HAVE_FINALIZE 0 #endif #ifndef Py_TPFLAGS_SEQUENCE #define Py_TPFLAGS_SEQUENCE 0 #endif #ifndef Py_TPFLAGS_MAPPING #define Py_TPFLAGS_MAPPING 0 #endif #ifndef METH_STACKLESS #define METH_STACKLESS 0 #endif #if PY_VERSION_HEX <= 0x030700A3 || !defined(METH_FASTCALL) #ifndef METH_FASTCALL #define METH_FASTCALL 0x80 #endif typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject *const *args, Py_ssize_t nargs); typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject *const *args, Py_ssize_t nargs, PyObject *kwnames); #else #if PY_VERSION_HEX >= 0x030d00A4 # define __Pyx_PyCFunctionFast PyCFunctionFast # define __Pyx_PyCFunctionFastWithKeywords PyCFunctionFastWithKeywords #else # define __Pyx_PyCFunctionFast _PyCFunctionFast # define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords #endif #endif #if CYTHON_METH_FASTCALL #define __Pyx_METH_FASTCALL METH_FASTCALL #define __Pyx_PyCFunction_FastCall __Pyx_PyCFunctionFast #define __Pyx_PyCFunction_FastCallWithKeywords __Pyx_PyCFunctionFastWithKeywords #else #define __Pyx_METH_FASTCALL METH_VARARGS #define __Pyx_PyCFunction_FastCall PyCFunction #define __Pyx_PyCFunction_FastCallWithKeywords PyCFunctionWithKeywords #endif #if CYTHON_VECTORCALL #define __pyx_vectorcallfunc vectorcallfunc #define __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET PY_VECTORCALL_ARGUMENTS_OFFSET #define __Pyx_PyVectorcall_NARGS(n) PyVectorcall_NARGS((size_t)(n)) #elif CYTHON_BACKPORT_VECTORCALL typedef PyObject *(*__pyx_vectorcallfunc)(PyObject *callable, PyObject *const *args, size_t nargsf, PyObject *kwnames); #define __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET ((size_t)1 << (8 * sizeof(size_t) - 1)) #define __Pyx_PyVectorcall_NARGS(n) ((Py_ssize_t)(((size_t)(n)) & ~__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET)) #else #define __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET 0 #define __Pyx_PyVectorcall_NARGS(n) ((Py_ssize_t)(n)) #endif #if PY_MAJOR_VERSION >= 0x030900B1 #define __Pyx_PyCFunction_CheckExact(func) PyCFunction_CheckExact(func) #else #define __Pyx_PyCFunction_CheckExact(func) PyCFunction_Check(func) #endif #define __Pyx_CyOrPyCFunction_Check(func) PyCFunction_Check(func) #if CYTHON_COMPILING_IN_CPYTHON #define __Pyx_CyOrPyCFunction_GET_FUNCTION(func) (((PyCFunctionObject*)(func))->m_ml->ml_meth) #elif !CYTHON_COMPILING_IN_LIMITED_API #define __Pyx_CyOrPyCFunction_GET_FUNCTION(func) PyCFunction_GET_FUNCTION(func) #endif #if CYTHON_COMPILING_IN_CPYTHON #define __Pyx_CyOrPyCFunction_GET_FLAGS(func) (((PyCFunctionObject*)(func))->m_ml->ml_flags) static CYTHON_INLINE PyObject* __Pyx_CyOrPyCFunction_GET_SELF(PyObject *func) { return (__Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_STATIC) ? NULL : ((PyCFunctionObject*)func)->m_self; } #endif static CYTHON_INLINE int __Pyx__IsSameCFunction(PyObject *func, void *cfunc) { #if CYTHON_COMPILING_IN_LIMITED_API return PyCFunction_Check(func) && PyCFunction_GetFunction(func) == (PyCFunction) cfunc; #else return PyCFunction_Check(func) && PyCFunction_GET_FUNCTION(func) == (PyCFunction) cfunc; #endif } #define __Pyx_IsSameCFunction(func, cfunc) __Pyx__IsSameCFunction(func, cfunc) #if __PYX_LIMITED_VERSION_HEX < 0x030900B1 #define __Pyx_PyType_FromModuleAndSpec(m, s, b) ((void)m, PyType_FromSpecWithBases(s, b)) typedef PyObject *(*__Pyx_PyCMethod)(PyObject *, PyTypeObject *, PyObject *const *, size_t, PyObject *); #else #define __Pyx_PyType_FromModuleAndSpec(m, s, b) PyType_FromModuleAndSpec(m, s, b) #define __Pyx_PyCMethod PyCMethod #endif #ifndef METH_METHOD #define METH_METHOD 0x200 #endif #if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc) #define PyObject_Malloc(s) PyMem_Malloc(s) #define PyObject_Free(p) PyMem_Free(p) #define PyObject_Realloc(p) PyMem_Realloc(p) #endif #if CYTHON_COMPILING_IN_LIMITED_API #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0) #define __Pyx_PyFrame_SetLineNumber(frame, lineno) #else #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0) #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno) #endif #if CYTHON_COMPILING_IN_LIMITED_API #define __Pyx_PyThreadState_Current PyThreadState_Get() #elif !CYTHON_FAST_THREAD_STATE #define __Pyx_PyThreadState_Current PyThreadState_GET() #elif PY_VERSION_HEX >= 0x030d00A1 #define __Pyx_PyThreadState_Current PyThreadState_GetUnchecked() #elif PY_VERSION_HEX >= 0x03060000 #define __Pyx_PyThreadState_Current _PyThreadState_UncheckedGet() #elif PY_VERSION_HEX >= 0x03000000 #define __Pyx_PyThreadState_Current PyThreadState_GET() #else #define __Pyx_PyThreadState_Current _PyThreadState_Current #endif #if CYTHON_COMPILING_IN_LIMITED_API static CYTHON_INLINE void *__Pyx_PyModule_GetState(PyObject *op) { void *result; result = PyModule_GetState(op); if (!result) Py_FatalError("Couldn't find the module state"); return result; } #endif #define __Pyx_PyObject_GetSlot(obj, name, func_ctype) __Pyx_PyType_GetSlot(Py_TYPE(obj), name, func_ctype) #if CYTHON_COMPILING_IN_LIMITED_API #define __Pyx_PyType_GetSlot(type, name, func_ctype) ((func_ctype) PyType_GetSlot((type), Py_##name)) #else #define __Pyx_PyType_GetSlot(type, name, func_ctype) ((type)->name) #endif #if PY_VERSION_HEX < 0x030700A2 && !defined(PyThread_tss_create) && !defined(Py_tss_NEEDS_INIT) #include "pythread.h" #define Py_tss_NEEDS_INIT 0 typedef int Py_tss_t; static CYTHON_INLINE int PyThread_tss_create(Py_tss_t *key) { *key = PyThread_create_key(); return 0; } static CYTHON_INLINE Py_tss_t * PyThread_tss_alloc(void) { Py_tss_t *key = (Py_tss_t *)PyObject_Malloc(sizeof(Py_tss_t)); *key = Py_tss_NEEDS_INIT; return key; } static CYTHON_INLINE void PyThread_tss_free(Py_tss_t *key) { PyObject_Free(key); } static CYTHON_INLINE int PyThread_tss_is_created(Py_tss_t *key) { return *key != Py_tss_NEEDS_INIT; } static CYTHON_INLINE void PyThread_tss_delete(Py_tss_t *key) { PyThread_delete_key(*key); *key = Py_tss_NEEDS_INIT; } static CYTHON_INLINE int PyThread_tss_set(Py_tss_t *key, void *value) { return PyThread_set_key_value(*key, value); } static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) { return PyThread_get_key_value(*key); } #endif #if PY_MAJOR_VERSION < 3 #if CYTHON_COMPILING_IN_PYPY #if PYPY_VERSION_NUM < 0x07030600 #if defined(__cplusplus) && __cplusplus >= 201402L [[deprecated("`with nogil:` inside a nogil function will not release the GIL in PyPy2 < 7.3.6")]] #elif defined(__GNUC__) || defined(__clang__) __attribute__ ((__deprecated__("`with nogil:` inside a nogil function will not release the GIL in PyPy2 < 7.3.6"))) #elif defined(_MSC_VER) __declspec(deprecated("`with nogil:` inside a nogil function will not release the GIL in PyPy2 < 7.3.6")) #endif static CYTHON_INLINE int PyGILState_Check(void) { return 0; } #else // PYPY_VERSION_NUM < 0x07030600 #endif // PYPY_VERSION_NUM < 0x07030600 #else static CYTHON_INLINE int PyGILState_Check(void) { PyThreadState * tstate = _PyThreadState_Current; return tstate && (tstate == PyGILState_GetThisThreadState()); } #endif #endif #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030d0000 || defined(_PyDict_NewPresized) #define __Pyx_PyDict_NewPresized(n) ((n <= 8) ? PyDict_New() : _PyDict_NewPresized(n)) #else #define __Pyx_PyDict_NewPresized(n) PyDict_New() #endif #if PY_MAJOR_VERSION >= 3 || CYTHON_FUTURE_DIVISION #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) #else #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) #endif #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX > 0x030600B4 && PY_VERSION_HEX < 0x030d0000 && CYTHON_USE_UNICODE_INTERNALS #define __Pyx_PyDict_GetItemStrWithError(dict, name) _PyDict_GetItem_KnownHash(dict, name, ((PyASCIIObject *) name)->hash) static CYTHON_INLINE PyObject * __Pyx_PyDict_GetItemStr(PyObject *dict, PyObject *name) { PyObject *res = __Pyx_PyDict_GetItemStrWithError(dict, name); if (res == NULL) PyErr_Clear(); return res; } #elif PY_MAJOR_VERSION >= 3 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07020000) #define __Pyx_PyDict_GetItemStrWithError PyDict_GetItemWithError #define __Pyx_PyDict_GetItemStr PyDict_GetItem #else static CYTHON_INLINE PyObject * __Pyx_PyDict_GetItemStrWithError(PyObject *dict, PyObject *name) { #if CYTHON_COMPILING_IN_PYPY return PyDict_GetItem(dict, name); #else PyDictEntry *ep; PyDictObject *mp = (PyDictObject*) dict; long hash = ((PyStringObject *) name)->ob_shash; assert(hash != -1); ep = (mp->ma_lookup)(mp, name, hash); if (ep == NULL) { return NULL; } return ep->me_value; #endif } #define __Pyx_PyDict_GetItemStr PyDict_GetItem #endif #if CYTHON_USE_TYPE_SLOTS #define __Pyx_PyType_GetFlags(tp) (((PyTypeObject *)tp)->tp_flags) #define __Pyx_PyType_HasFeature(type, feature) ((__Pyx_PyType_GetFlags(type) & (feature)) != 0) #define __Pyx_PyObject_GetIterNextFunc(obj) (Py_TYPE(obj)->tp_iternext) #else #define __Pyx_PyType_GetFlags(tp) (PyType_GetFlags((PyTypeObject *)tp)) #define __Pyx_PyType_HasFeature(type, feature) PyType_HasFeature(type, feature) #define __Pyx_PyObject_GetIterNextFunc(obj) PyIter_Next #endif #if CYTHON_COMPILING_IN_LIMITED_API #define __Pyx_SetItemOnTypeDict(tp, k, v) PyObject_GenericSetAttr((PyObject*)tp, k, v) #else #define __Pyx_SetItemOnTypeDict(tp, k, v) PyDict_SetItem(tp->tp_dict, k, v) #endif #if CYTHON_USE_TYPE_SPECS && PY_VERSION_HEX >= 0x03080000 #define __Pyx_PyHeapTypeObject_GC_Del(obj) {\ PyTypeObject *type = Py_TYPE((PyObject*)obj);\ assert(__Pyx_PyType_HasFeature(type, Py_TPFLAGS_HEAPTYPE));\ PyObject_GC_Del(obj);\ Py_DECREF(type);\ } #else #define __Pyx_PyHeapTypeObject_GC_Del(obj) PyObject_GC_Del(obj) #endif #if CYTHON_COMPILING_IN_LIMITED_API #define CYTHON_PEP393_ENABLED 1 #define __Pyx_PyUnicode_READY(op) (0) #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GetLength(u) #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_ReadChar(u, i) #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((void)u, 1114111U) #define __Pyx_PyUnicode_KIND(u) ((void)u, (0)) #define __Pyx_PyUnicode_DATA(u) ((void*)u) #define __Pyx_PyUnicode_READ(k, d, i) ((void)k, PyUnicode_ReadChar((PyObject*)(d), i)) #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GetLength(u)) #elif PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND) #define CYTHON_PEP393_ENABLED 1 #if PY_VERSION_HEX >= 0x030C0000 #define __Pyx_PyUnicode_READY(op) (0) #else #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ?\ 0 : _PyUnicode_Ready((PyObject *)(op))) #endif #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u) #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i) #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u) #define __Pyx_PyUnicode_KIND(u) ((int)PyUnicode_KIND(u)) #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u) #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i) #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, (Py_UCS4) ch) #if PY_VERSION_HEX >= 0x030C0000 #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_LENGTH(u)) #else #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03090000 #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : ((PyCompactUnicodeObject *)(u))->wstr_length)) #else #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u))) #endif #endif #else #define CYTHON_PEP393_ENABLED 0 #define PyUnicode_1BYTE_KIND 1 #define PyUnicode_2BYTE_KIND 2 #define PyUnicode_4BYTE_KIND 4 #define __Pyx_PyUnicode_READY(op) (0) #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u) #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i])) #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((sizeof(Py_UNICODE) == 2) ? 65535U : 1114111U) #define __Pyx_PyUnicode_KIND(u) ((int)sizeof(Py_UNICODE)) #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u)) #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i])) #define __Pyx_PyUnicode_WRITE(k, d, i, ch) (((void)(k)), ((Py_UNICODE*)d)[i] = (Py_UNICODE) ch) #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_SIZE(u)) #endif #if CYTHON_COMPILING_IN_PYPY #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b) #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b) #else #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b) #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\ PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b)) #endif #if CYTHON_COMPILING_IN_PYPY #if !defined(PyUnicode_DecodeUnicodeEscape) #define PyUnicode_DecodeUnicodeEscape(s, size, errors) PyUnicode_Decode(s, size, "unicode_escape", errors) #endif #if !defined(PyUnicode_Contains) || (PY_MAJOR_VERSION == 2 && PYPY_VERSION_NUM < 0x07030500) #undef PyUnicode_Contains #define PyUnicode_Contains(u, s) PySequence_Contains(u, s) #endif #if !defined(PyByteArray_Check) #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type) #endif #if !defined(PyObject_Format) #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt) #endif #endif #define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None || (PyString_Check(b) && !PyString_CheckExact(b)))) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b)) #define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None || (PyUnicode_Check(b) && !PyUnicode_CheckExact(b)))) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b)) #if PY_MAJOR_VERSION >= 3 #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b) #else #define __Pyx_PyString_Format(a, b) PyString_Format(a, b) #endif #if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII) #define PyObject_ASCII(o) PyObject_Repr(o) #endif #if PY_MAJOR_VERSION >= 3 #define PyBaseString_Type PyUnicode_Type #define PyStringObject PyUnicodeObject #define PyString_Type PyUnicode_Type #define PyString_Check PyUnicode_Check #define PyString_CheckExact PyUnicode_CheckExact #ifndef PyObject_Unicode #define PyObject_Unicode PyObject_Str #endif #endif #if PY_MAJOR_VERSION >= 3 #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj) #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj) #else #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj)) #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj)) #endif #if CYTHON_COMPILING_IN_CPYTHON #define __Pyx_PySequence_ListKeepNew(obj)\ (likely(PyList_CheckExact(obj) && Py_REFCNT(obj) == 1) ? 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Use 'CYTHON_EXTERN_C' instead.") #else #warning Please do not define the '__PYX_EXTERN_C' macro externally. Use 'CYTHON_EXTERN_C' instead. #endif #else #ifdef __cplusplus #define __PYX_EXTERN_C extern "C" #else #define __PYX_EXTERN_C extern #endif #endif #define __PYX_HAVE__pysam__libcbcf #define __PYX_HAVE_API__pysam__libcbcf /* Early includes */ #include <stdint.h> #include <string.h> #include <stdlib.h> #include <stdio.h> #include <sys/types.h> #include "stdarg.h" #include "htslib/kstring.h" #include "htslib_util.h" #include "htslib/hfile.h" #include "htslib/bgzf.h" #include "htslib/hts.h" #include "htslib/sam.h" #include "htslib/faidx.h" #include "htslib/tbx.h" #include "htslib/vcf.h" #include "htslib/vcfutils.h" #include "htslib/cram.h" #include <errno.h> #include <stddef.h> #include "pythread.h" #if CYTHON_COMPILING_IN_PYPY #ifdef _MSC_VER #pragma message ("This module uses CPython specific internals of 'array.array', which are not available in PyPy.") #else #warning This module uses CPython specific internals of 'array.array', which are not available in PyPy. #endif #endif #ifdef _OPENMP #include <omp.h> #endif /* _OPENMP */ #if defined(PYREX_WITHOUT_ASSERTIONS) && !defined(CYTHON_WITHOUT_ASSERTIONS) #define CYTHON_WITHOUT_ASSERTIONS #endif typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding; const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; #define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0 #define __PYX_DEFAULT_STRING_ENCODING_IS_UTF8 0 #define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT (PY_MAJOR_VERSION >= 3 && __PYX_DEFAULT_STRING_ENCODING_IS_UTF8) #define __PYX_DEFAULT_STRING_ENCODING "" #define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString #define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize #define __Pyx_uchar_cast(c) ((unsigned char)c) #define __Pyx_long_cast(x) ((long)x) #define __Pyx_fits_Py_ssize_t(v, type, is_signed) (\ (sizeof(type) < sizeof(Py_ssize_t)) ||\ (sizeof(type) > sizeof(Py_ssize_t) &&\ likely(v < (type)PY_SSIZE_T_MAX ||\ v == (type)PY_SSIZE_T_MAX) &&\ (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\ v == (type)PY_SSIZE_T_MIN))) ||\ (sizeof(type) == sizeof(Py_ssize_t) &&\ (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\ v == (type)PY_SSIZE_T_MAX))) ) static CYTHON_INLINE int __Pyx_is_valid_index(Py_ssize_t i, Py_ssize_t limit) { return (size_t) i < (size_t) limit; } #if defined (__cplusplus) && __cplusplus >= 201103L #include <cstdlib> #define __Pyx_sst_abs(value) std::abs(value) #elif SIZEOF_INT >= SIZEOF_SIZE_T #define __Pyx_sst_abs(value) abs(value) #elif SIZEOF_LONG >= SIZEOF_SIZE_T #define __Pyx_sst_abs(value) labs(value) #elif defined (_MSC_VER) #define __Pyx_sst_abs(value) ((Py_ssize_t)_abs64(value)) #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L #define __Pyx_sst_abs(value) llabs(value) #elif defined (__GNUC__) #define __Pyx_sst_abs(value) __builtin_llabs(value) #else #define __Pyx_sst_abs(value) ((value<0) ? -value : value) #endif static CYTHON_INLINE Py_ssize_t __Pyx_ssize_strlen(const char *s); static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*); static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); static CYTHON_INLINE PyObject* __Pyx_PyByteArray_FromString(const char*); #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) #define __Pyx_PyBytes_FromString PyBytes_FromString #define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); #if PY_MAJOR_VERSION < 3 #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize #else #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize #endif #define __Pyx_PyBytes_AsWritableString(s) ((char*) PyBytes_AS_STRING(s)) #define __Pyx_PyBytes_AsWritableSString(s) ((signed char*) PyBytes_AS_STRING(s)) #define __Pyx_PyBytes_AsWritableUString(s) ((unsigned char*) PyBytes_AS_STRING(s)) #define __Pyx_PyBytes_AsString(s) ((const char*) PyBytes_AS_STRING(s)) #define __Pyx_PyBytes_AsSString(s) ((const signed char*) PyBytes_AS_STRING(s)) #define __Pyx_PyBytes_AsUString(s) ((const unsigned char*) PyBytes_AS_STRING(s)) #define __Pyx_PyObject_AsWritableString(s) ((char*)(__pyx_uintptr_t) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_AsWritableSString(s) ((signed char*)(__pyx_uintptr_t) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*)(__pyx_uintptr_t) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s) #define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s) #define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s) #define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s) #define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s) #define __Pyx_PyUnicode_FromOrdinal(o) PyUnicode_FromOrdinal((int)o) #define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode #define __Pyx_NewRef(obj) (Py_INCREF(obj), obj) #define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None) static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b); static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*); static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject*); static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x); #define __Pyx_PySequence_Tuple(obj)\ (likely(PyTuple_CheckExact(obj)) ? __Pyx_NewRef(obj) : PySequence_Tuple(obj)) static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*); static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t); static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject*); #if CYTHON_ASSUME_SAFE_MACROS #define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x)) #else #define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x) #endif #define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x)) #if PY_MAJOR_VERSION >= 3 #define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x)) #else #define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x)) #endif #if CYTHON_USE_PYLONG_INTERNALS #if PY_VERSION_HEX >= 0x030C00A7 #ifndef _PyLong_SIGN_MASK #define _PyLong_SIGN_MASK 3 #endif #ifndef _PyLong_NON_SIZE_BITS #define _PyLong_NON_SIZE_BITS 3 #endif #define __Pyx_PyLong_Sign(x) (((PyLongObject*)x)->long_value.lv_tag & _PyLong_SIGN_MASK) #define __Pyx_PyLong_IsNeg(x) ((__Pyx_PyLong_Sign(x) & 2) != 0) #define __Pyx_PyLong_IsNonNeg(x) (!__Pyx_PyLong_IsNeg(x)) #define __Pyx_PyLong_IsZero(x) (__Pyx_PyLong_Sign(x) & 1) #define __Pyx_PyLong_IsPos(x) (__Pyx_PyLong_Sign(x) == 0) #define __Pyx_PyLong_CompactValueUnsigned(x) (__Pyx_PyLong_Digits(x)[0]) #define __Pyx_PyLong_DigitCount(x) ((Py_ssize_t) (((PyLongObject*)x)->long_value.lv_tag >> _PyLong_NON_SIZE_BITS)) #define __Pyx_PyLong_SignedDigitCount(x)\ ((1 - (Py_ssize_t) __Pyx_PyLong_Sign(x)) * __Pyx_PyLong_DigitCount(x)) #if defined(PyUnstable_Long_IsCompact) && defined(PyUnstable_Long_CompactValue) #define __Pyx_PyLong_IsCompact(x) PyUnstable_Long_IsCompact((PyLongObject*) x) #define __Pyx_PyLong_CompactValue(x) PyUnstable_Long_CompactValue((PyLongObject*) x) #else #define __Pyx_PyLong_IsCompact(x) (((PyLongObject*)x)->long_value.lv_tag < (2 << _PyLong_NON_SIZE_BITS)) #define __Pyx_PyLong_CompactValue(x) ((1 - (Py_ssize_t) __Pyx_PyLong_Sign(x)) * (Py_ssize_t) __Pyx_PyLong_Digits(x)[0]) #endif typedef Py_ssize_t __Pyx_compact_pylong; typedef size_t __Pyx_compact_upylong; #else #define __Pyx_PyLong_IsNeg(x) (Py_SIZE(x) < 0) #define __Pyx_PyLong_IsNonNeg(x) (Py_SIZE(x) >= 0) #define __Pyx_PyLong_IsZero(x) (Py_SIZE(x) == 0) #define __Pyx_PyLong_IsPos(x) (Py_SIZE(x) > 0) #define __Pyx_PyLong_CompactValueUnsigned(x) ((Py_SIZE(x) == 0) ? 0 : __Pyx_PyLong_Digits(x)[0]) #define __Pyx_PyLong_DigitCount(x) __Pyx_sst_abs(Py_SIZE(x)) #define __Pyx_PyLong_SignedDigitCount(x) Py_SIZE(x) #define __Pyx_PyLong_IsCompact(x) (Py_SIZE(x) == 0 || Py_SIZE(x) == 1 || Py_SIZE(x) == -1) #define __Pyx_PyLong_CompactValue(x)\ ((Py_SIZE(x) == 0) ? (sdigit) 0 : ((Py_SIZE(x) < 0) ? -(sdigit)__Pyx_PyLong_Digits(x)[0] : (sdigit)__Pyx_PyLong_Digits(x)[0])) typedef sdigit __Pyx_compact_pylong; typedef digit __Pyx_compact_upylong; #endif #if PY_VERSION_HEX >= 0x030C00A5 #define __Pyx_PyLong_Digits(x) (((PyLongObject*)x)->long_value.ob_digit) #else #define __Pyx_PyLong_Digits(x) (((PyLongObject*)x)->ob_digit) #endif #endif #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII #include <string.h> static int __Pyx_sys_getdefaultencoding_not_ascii; static int __Pyx_init_sys_getdefaultencoding_params(void) { PyObject* sys; PyObject* default_encoding = NULL; PyObject* ascii_chars_u = NULL; PyObject* ascii_chars_b = NULL; const char* default_encoding_c; sys = PyImport_ImportModule("sys"); if (!sys) goto bad; default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL); Py_DECREF(sys); if (!default_encoding) goto bad; default_encoding_c = PyBytes_AsString(default_encoding); if (!default_encoding_c) goto bad; if (strcmp(default_encoding_c, "ascii") == 0) { __Pyx_sys_getdefaultencoding_not_ascii = 0; } else { char ascii_chars[128]; int c; for (c = 0; c < 128; c++) { ascii_chars[c] = (char) c; } __Pyx_sys_getdefaultencoding_not_ascii = 1; ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL); if (!ascii_chars_u) goto bad; ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL); if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) { PyErr_Format( PyExc_ValueError, "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.", default_encoding_c); goto bad; } Py_DECREF(ascii_chars_u); Py_DECREF(ascii_chars_b); } Py_DECREF(default_encoding); return 0; bad: Py_XDECREF(default_encoding); Py_XDECREF(ascii_chars_u); Py_XDECREF(ascii_chars_b); return -1; } #endif #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3 #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL) #else #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL) #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT #include <string.h> static char* __PYX_DEFAULT_STRING_ENCODING; static int __Pyx_init_sys_getdefaultencoding_params(void) { PyObject* sys; PyObject* default_encoding = NULL; char* default_encoding_c; sys = PyImport_ImportModule("sys"); if (!sys) goto bad; default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); Py_DECREF(sys); if (!default_encoding) goto bad; default_encoding_c = PyBytes_AsString(default_encoding); if (!default_encoding_c) goto bad; __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c) + 1); if (!__PYX_DEFAULT_STRING_ENCODING) goto bad; strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c); Py_DECREF(default_encoding); return 0; bad: Py_XDECREF(default_encoding); return -1; } #endif #endif /* Test for GCC > 2.95 */ #if defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95))) #define likely(x) __builtin_expect(!!(x), 1) #define unlikely(x) __builtin_expect(!!(x), 0) #else /* !__GNUC__ or GCC < 2.95 */ #define likely(x) (x) #define unlikely(x) (x) #endif /* __GNUC__ */ static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; } #if !CYTHON_USE_MODULE_STATE static PyObject *__pyx_m = NULL; #endif static int __pyx_lineno; static int __pyx_clineno = 0; static const char * __pyx_cfilenm = __FILE__; static const char *__pyx_filename; /* #### Code section: filename_table ### */ static const char *__pyx_f[] = { "pysam/libcbcf.pyx", "contextvars.pxd", "array.pxd", "pysam/libcbcf.pxd", "<stringsource>", "type.pxd", "bool.pxd", "complex.pxd", }; /* #### Code section: utility_code_proto_before_types ### */ /* ForceInitThreads.proto */ #ifndef __PYX_FORCE_INIT_THREADS #define __PYX_FORCE_INIT_THREADS 0 #endif /* NoFastGil.proto */ #define __Pyx_PyGILState_Ensure PyGILState_Ensure #define __Pyx_PyGILState_Release PyGILState_Release #define __Pyx_FastGIL_Remember() #define __Pyx_FastGIL_Forget() #define __Pyx_FastGilFuncInit() /* #### Code section: numeric_typedefs ### */ /* #### Code section: complex_type_declarations ### */ /* #### Code section: type_declarations ### */ /*--- Type declarations ---*/ #ifndef _ARRAYARRAY_H struct arrayobject; typedef struct arrayobject arrayobject; #endif struct __pyx_obj_5pysam_10libchtslib_HTSFile; struct __pyx_obj_5pysam_7libcbcf_VariantHeader; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples; struct __pyx_obj_5pysam_7libcbcf_VariantContig; struct __pyx_obj_5pysam_7libcbcf_VariantMetadata; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata; struct __pyx_obj_5pysam_7libcbcf_VariantRecord; struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter; struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat; struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo; struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples; struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample; struct __pyx_obj_5pysam_7libcbcf_BaseIndex; struct __pyx_obj_5pysam_7libcbcf_BCFIndex; struct __pyx_obj_5pysam_7libcbcf_TabixIndex; struct __pyx_obj_5pysam_7libcbcf_BaseIterator; struct __pyx_obj_5pysam_7libcbcf_BCFIterator; struct __pyx_obj_5pysam_7libcbcf_TabixIterator; struct __pyx_obj_5pysam_7libcbcf_VariantFile; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_1_genexpr; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_2_genexpr; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_3_genexpr; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_4_genexpr; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_5___get__; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_6_genexpr; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_7___iter__; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_8_itervalues; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_9_iteritems; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_10___iter__; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_11___iter__; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_12_itervalues; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_13_iteritems; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_14___iter__; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_15_itervalues; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_16_iteritems; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_17___iter__; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_18___iter__; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_19_itervalues; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_20_iteritems; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_21___iter__; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_22_itervalues; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_23_iteritems; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_24___iter__; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_25_itervalues; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_26_iteritems; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_27___iter__; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_28_itervalues; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_29_iteritems; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_30___set__; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_31_genexpr; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_32_genexpr; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_33___iter__; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_34_itervalues; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_35_iteritems; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_36_itervalues; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_37_iteritems; struct __pyx_opt_args_7cpython_11contextvars_get_value; struct __pyx_opt_args_7cpython_11contextvars_get_value_no_default; /* "cpython/contextvars.pxd":112 * * * cdef inline object get_value(var, default_value=None): # <<<<<<<<<<<<<< * """Return a new reference to the value of the context variable, * or the default value of the context variable, */ struct __pyx_opt_args_7cpython_11contextvars_get_value { int __pyx_n; PyObject *default_value; }; /* "cpython/contextvars.pxd":129 * * * cdef inline object get_value_no_default(var, default_value=None): # <<<<<<<<<<<<<< * """Return a new reference to the value of the context variable, * or the provided default value if no such value was found. */ struct __pyx_opt_args_7cpython_11contextvars_get_value_no_default { int __pyx_n; PyObject *default_value; }; struct __pyx_opt_args_5pysam_9libcutils_parse_region; struct __pyx_opt_args_5pysam_9libcutils_qualitystring_to_array; struct __pyx_opt_args_5pysam_9libcutils_array_to_qualitystring; struct __pyx_opt_args_5pysam_9libcutils_qualities_to_qualitystring; struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str; struct __pyx_opt_args_5pysam_9libcutils_charptr_to_bytes; struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str_w_len; struct __pyx_opt_args_5pysam_9libcutils_force_str; struct __pyx_opt_args_5pysam_9libcutils_force_bytes; struct __pyx_opt_args_5pysam_9libcutils_decode_bytes; /* "pysam/libcutils.pxd":8 * from cpython cimport array as c_array * * cpdef parse_region(contig=*, start=*, stop=*, region=*, reference=*, end=*) # <<<<<<<<<<<<<< * * cdef int libc_whence_from_io(int whence) */ struct __pyx_opt_args_5pysam_9libcutils_parse_region { int __pyx_n; PyObject *contig; PyObject *start; PyObject *stop; PyObject *region; PyObject *reference; PyObject *end; }; /* "pysam/libcutils.pxd":15 * # Utility functions for quality string conversions * * cpdef c_array.array qualitystring_to_array(input_str, int offset=*) # <<<<<<<<<<<<<< * cpdef array_to_qualitystring(c_array.array arr, int offset=*) * cpdef qualities_to_qualitystring(qualities, int offset=*) */ struct __pyx_opt_args_5pysam_9libcutils_qualitystring_to_array { int __pyx_n; int offset; }; /* "pysam/libcutils.pxd":16 * * cpdef c_array.array qualitystring_to_array(input_str, int offset=*) * cpdef array_to_qualitystring(c_array.array arr, int offset=*) # <<<<<<<<<<<<<< * cpdef qualities_to_qualitystring(qualities, int offset=*) * */ struct __pyx_opt_args_5pysam_9libcutils_array_to_qualitystring { int __pyx_n; int offset; }; /* "pysam/libcutils.pxd":17 * cpdef c_array.array qualitystring_to_array(input_str, int offset=*) * cpdef array_to_qualitystring(c_array.array arr, int offset=*) * cpdef qualities_to_qualitystring(qualities, int offset=*) # <<<<<<<<<<<<<< * * ######################################################################## */ struct __pyx_opt_args_5pysam_9libcutils_qualities_to_qualitystring { int __pyx_n; int offset; }; /* "pysam/libcutils.pxd":29 * ## Python 3 compatibility functions * ######################################################################## * cdef charptr_to_str(const char *s, encoding=*, errors=*) # <<<<<<<<<<<<<< * cdef bytes charptr_to_bytes(const char *s, encoding=*, errors=*) * cdef charptr_to_str_w_len(const char* s, size_t n, encoding=*, errors=*) */ struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str { int __pyx_n; PyObject *encoding; PyObject *errors; }; /* "pysam/libcutils.pxd":30 * ######################################################################## * cdef charptr_to_str(const char *s, encoding=*, errors=*) * cdef bytes charptr_to_bytes(const char *s, encoding=*, errors=*) # <<<<<<<<<<<<<< * cdef charptr_to_str_w_len(const char* s, size_t n, encoding=*, errors=*) * cdef force_str(object s, encoding=*, errors=*) */ struct __pyx_opt_args_5pysam_9libcutils_charptr_to_bytes { int __pyx_n; PyObject *encoding; PyObject *errors; }; /* "pysam/libcutils.pxd":31 * cdef charptr_to_str(const char *s, encoding=*, errors=*) * cdef bytes charptr_to_bytes(const char *s, encoding=*, errors=*) * cdef charptr_to_str_w_len(const char* s, size_t n, encoding=*, errors=*) # <<<<<<<<<<<<<< * cdef force_str(object s, encoding=*, errors=*) * cdef bytes force_bytes(object s, encoding=*, errors=*) */ struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str_w_len { int __pyx_n; PyObject *encoding; PyObject *errors; }; /* "pysam/libcutils.pxd":32 * cdef bytes charptr_to_bytes(const char *s, encoding=*, errors=*) * cdef charptr_to_str_w_len(const char* s, size_t n, encoding=*, errors=*) * cdef force_str(object s, encoding=*, errors=*) # <<<<<<<<<<<<<< * cdef bytes force_bytes(object s, encoding=*, errors=*) * cdef decode_bytes(bytes s, encoding=*, errors=*) */ struct __pyx_opt_args_5pysam_9libcutils_force_str { int __pyx_n; PyObject *encoding; PyObject *errors; }; /* "pysam/libcutils.pxd":33 * cdef charptr_to_str_w_len(const char* s, size_t n, encoding=*, errors=*) * cdef force_str(object s, encoding=*, errors=*) * cdef bytes force_bytes(object s, encoding=*, errors=*) # <<<<<<<<<<<<<< * cdef decode_bytes(bytes s, encoding=*, errors=*) * cdef bytes encode_filename(object filename) */ struct __pyx_opt_args_5pysam_9libcutils_force_bytes { int __pyx_n; PyObject *encoding; PyObject *errors; }; /* "pysam/libcutils.pxd":34 * cdef force_str(object s, encoding=*, errors=*) * cdef bytes force_bytes(object s, encoding=*, errors=*) * cdef decode_bytes(bytes s, encoding=*, errors=*) # <<<<<<<<<<<<<< * cdef bytes encode_filename(object filename) * cdef from_string_and_size(const char *s, size_t length) */ struct __pyx_opt_args_5pysam_9libcutils_decode_bytes { int __pyx_n; PyObject *encoding; PyObject *errors; }; struct __pyx_opt_args_5pysam_7libcbcf_char_array_to_tuple; /* "pysam/libcbcf.pyx":267 * * * cdef tuple char_array_to_tuple(const char **a, ssize_t n, int free_after=0): # <<<<<<<<<<<<<< * if not a: * return None */ struct __pyx_opt_args_5pysam_7libcbcf_char_array_to_tuple { int __pyx_n; int free_after; }; /* "pysam/libchtslib.pxd":2706 * * * cdef class HTSFile(object): # <<<<<<<<<<<<<< * cdef htsFile *htsfile # pointer to htsFile structure * cdef int64_t start_offset # BGZF offset of first record */ struct __pyx_obj_5pysam_10libchtslib_HTSFile { PyObject_HEAD struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile *__pyx_vtab; htsFile *htsfile; int64_t start_offset; PyObject *filename; PyObject *mode; PyObject *threads; PyObject *index_filename; int is_stream; int is_remote; int duplicate_filehandle; }; /* "pysam/libcbcf.pxd":39 * * * cdef class VariantHeader(object): # <<<<<<<<<<<<<< * cdef bcf_hdr_t *ptr * */ struct __pyx_obj_5pysam_7libcbcf_VariantHeader { PyObject_HEAD struct __pyx_vtabstruct_5pysam_7libcbcf_VariantHeader *__pyx_vtab; bcf_hdr_t *ptr; }; /* "pysam/libcbcf.pxd":47 * * * cdef class VariantHeaderRecord(object): # <<<<<<<<<<<<<< * cdef readonly VariantHeader header * cdef bcf_hrec_t *ptr */ struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord { PyObject_HEAD struct __pyx_obj_5pysam_7libcbcf_VariantHeader *header; bcf_hrec_t *ptr; }; /* "pysam/libcbcf.pxd":52 * * * cdef class VariantHeaderRecords(object): # <<<<<<<<<<<<<< * cdef readonly VariantHeader header * */ struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords { PyObject_HEAD struct __pyx_obj_5pysam_7libcbcf_VariantHeader *header; }; /* "pysam/libcbcf.pxd":56 * * * cdef class VariantHeaderContigs(object): # <<<<<<<<<<<<<< * cdef readonly VariantHeader header * */ struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs { PyObject_HEAD struct __pyx_obj_5pysam_7libcbcf_VariantHeader *header; }; /* "pysam/libcbcf.pxd":60 * * * cdef class VariantHeaderSamples(object): # <<<<<<<<<<<<<< * cdef readonly VariantHeader header * */ struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples { PyObject_HEAD struct __pyx_obj_5pysam_7libcbcf_VariantHeader *header; }; /* "pysam/libcbcf.pxd":64 * * * cdef class VariantContig(object): # <<<<<<<<<<<<<< * cdef readonly VariantHeader header * cdef int id */ struct __pyx_obj_5pysam_7libcbcf_VariantContig { PyObject_HEAD struct __pyx_obj_5pysam_7libcbcf_VariantHeader *header; int id; }; /* "pysam/libcbcf.pxd":69 * * * cdef class VariantMetadata(object): # <<<<<<<<<<<<<< * cdef readonly VariantHeader header * cdef int type */ struct __pyx_obj_5pysam_7libcbcf_VariantMetadata { PyObject_HEAD struct __pyx_obj_5pysam_7libcbcf_VariantHeader *header; int type; int id; }; /* "pysam/libcbcf.pxd":75 * * * cdef class VariantHeaderMetadata(object): # <<<<<<<<<<<<<< * cdef readonly VariantHeader header * cdef int32_t type */ struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata { PyObject_HEAD struct __pyx_obj_5pysam_7libcbcf_VariantHeader *header; int32_t type; }; /* "pysam/libcbcf.pxd":80 * * * cdef class VariantRecord(object): # <<<<<<<<<<<<<< * cdef readonly VariantHeader header * cdef bcf1_t *ptr */ struct __pyx_obj_5pysam_7libcbcf_VariantRecord { PyObject_HEAD struct __pyx_obj_5pysam_7libcbcf_VariantHeader *header; bcf1_t *ptr; }; /* "pysam/libcbcf.pxd":85 * * * cdef class VariantRecordFilter(object): # <<<<<<<<<<<<<< * cdef VariantRecord record * */ struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter { PyObject_HEAD struct __pyx_obj_5pysam_7libcbcf_VariantRecord *record; }; /* "pysam/libcbcf.pxd":89 * * * cdef class VariantRecordFormat(object): # <<<<<<<<<<<<<< * cdef VariantRecord record * */ struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat { PyObject_HEAD struct __pyx_obj_5pysam_7libcbcf_VariantRecord *record; }; /* "pysam/libcbcf.pxd":93 * * * cdef class VariantRecordInfo(object): # <<<<<<<<<<<<<< * cdef VariantRecord record * */ struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo { PyObject_HEAD struct __pyx_obj_5pysam_7libcbcf_VariantRecord *record; }; /* "pysam/libcbcf.pxd":97 * * * cdef class VariantRecordSamples(object): # <<<<<<<<<<<<<< * cdef VariantRecord record * */ struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples { PyObject_HEAD struct __pyx_obj_5pysam_7libcbcf_VariantRecord *record; }; /* "pysam/libcbcf.pxd":101 * * * cdef class VariantRecordSample(object): # <<<<<<<<<<<<<< * cdef VariantRecord record * cdef readonly int32_t index */ struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample { PyObject_HEAD struct __pyx_obj_5pysam_7libcbcf_VariantRecord *record; int32_t index; }; /* "pysam/libcbcf.pxd":106 * * * cdef class BaseIndex(object): # <<<<<<<<<<<<<< * cdef tuple refs * cdef dict refmap */ struct __pyx_obj_5pysam_7libcbcf_BaseIndex { PyObject_HEAD PyObject *refs; PyObject *refmap; }; /* "pysam/libcbcf.pxd":111 * * * cdef class BCFIndex(BaseIndex): # <<<<<<<<<<<<<< * cdef readonly VariantHeader header * cdef hts_idx_t *ptr */ struct __pyx_obj_5pysam_7libcbcf_BCFIndex { struct __pyx_obj_5pysam_7libcbcf_BaseIndex __pyx_base; struct __pyx_obj_5pysam_7libcbcf_VariantHeader *header; hts_idx_t *ptr; }; /* "pysam/libcbcf.pxd":116 * * * cdef class TabixIndex(BaseIndex): # <<<<<<<<<<<<<< * cdef tbx_t *ptr * */ struct __pyx_obj_5pysam_7libcbcf_TabixIndex { struct __pyx_obj_5pysam_7libcbcf_BaseIndex __pyx_base; tbx_t *ptr; }; /* "pysam/libcbcf.pxd":120 * * * cdef class BaseIterator(object): # <<<<<<<<<<<<<< * cdef VariantFile bcf * cdef hts_itr_t *iter */ struct __pyx_obj_5pysam_7libcbcf_BaseIterator { PyObject_HEAD struct __pyx_obj_5pysam_7libcbcf_VariantFile *bcf; hts_itr_t *iter; }; /* "pysam/libcbcf.pxd":125 * * * cdef class BCFIterator(BaseIterator): # <<<<<<<<<<<<<< * cdef BCFIndex index * */ struct __pyx_obj_5pysam_7libcbcf_BCFIterator { struct __pyx_obj_5pysam_7libcbcf_BaseIterator __pyx_base; struct __pyx_obj_5pysam_7libcbcf_BCFIndex *index; }; /* "pysam/libcbcf.pxd":129 * * * cdef class TabixIterator(BaseIterator): # <<<<<<<<<<<<<< * cdef TabixIndex index * cdef kstring_t line_buffer */ struct __pyx_obj_5pysam_7libcbcf_TabixIterator { struct __pyx_obj_5pysam_7libcbcf_BaseIterator __pyx_base; struct __pyx_obj_5pysam_7libcbcf_TabixIndex *index; kstring_t line_buffer; }; /* "pysam/libcbcf.pxd":134 * * * cdef class VariantFile(HTSFile): # <<<<<<<<<<<<<< * cdef readonly VariantHeader header * cdef readonly BaseIndex index */ struct __pyx_obj_5pysam_7libcbcf_VariantFile { struct __pyx_obj_5pysam_10libchtslib_HTSFile __pyx_base; struct __pyx_obj_5pysam_7libcbcf_VariantHeader *header; struct __pyx_obj_5pysam_7libcbcf_BaseIndex *index; int drop_samples; int is_reading; int header_written; }; /* "pysam/libcbcf.pyx":267 * * * cdef tuple char_array_to_tuple(const char **a, ssize_t n, int free_after=0): # <<<<<<<<<<<<<< * if not a: * return None */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple { PyObject_HEAD char const **__pyx_v_a; }; /* "pysam/libcbcf.pyx":271 * return None * try: * return tuple(charptr_to_str(a[i]) for i in range(n)) # <<<<<<<<<<<<<< * finally: * if free_after and a: */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_1_genexpr { PyObject_HEAD struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple *__pyx_outer_scope; Py_ssize_t __pyx_genexpr_arg_0; Py_ssize_t __pyx_v_i; Py_ssize_t __pyx_t_0; Py_ssize_t __pyx_t_1; Py_ssize_t __pyx_t_2; }; /* "pysam/libcbcf.pyx":302 * # Otherwise, copy the entire block * b = datac[:n] * value = tuple(decode_bytes(v, 'utf-8') if v and v != bcf_str_missing else None for v in b.split(b',')) # <<<<<<<<<<<<<< * else: * value = [] */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_2_genexpr { PyObject_HEAD PyObject *__pyx_genexpr_arg_0; PyObject *__pyx_v_v; PyObject *__pyx_t_0; Py_ssize_t __pyx_t_1; PyObject *(*__pyx_t_2)(PyObject *); }; /* "pysam/libcbcf.pyx":360 * if bt_type == BCF_BT_CHAR: * if not isinstance(values, (str, bytes)): * values = b','.join(force_bytes(v) if v else bcf_str_missing for v in values) # <<<<<<<<<<<<<< * value_count = len(values) * assert value_count <= n */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_3_genexpr { PyObject_HEAD PyObject *__pyx_genexpr_arg_0; PyObject *__pyx_v_v; PyObject *__pyx_t_0; Py_ssize_t __pyx_t_1; PyObject *(*__pyx_t_2)(PyObject *); }; /* "pysam/libcbcf.pyx":614 * raise ValueError('Integer value too small/large to store in VCF/BCF') * elif ht_type == BCF_HT_STR: * values = b','.join(force_bytes(v) if v is not None else b'' for v in values) # <<<<<<<<<<<<<< * elif ht_type == BCF_HT_FLAG: * if values[0] not in (True, False, None, 1, 0): */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_4_genexpr { PyObject_HEAD PyObject *__pyx_genexpr_arg_0; PyObject *__pyx_v_v; PyObject *__pyx_t_0; Py_ssize_t __pyx_t_1; PyObject *(*__pyx_t_2)(PyObject *); }; /* "pysam/libcbcf.pyx":1274 * return charptr_to_str(r.value) if r and r.value else None * * @property # <<<<<<<<<<<<<< * def attrs(self): * """sequence of additional header attributes""" */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_5___get__ { PyObject_HEAD bcf_hrec_t *__pyx_v_r; }; /* "pysam/libcbcf.pyx":1281 * return () * cdef int i * return tuple((bcf_str_cache_get_charptr(r.keys[i]) if r.keys[i] else None, # <<<<<<<<<<<<<< * charptr_to_str(r.vals[i]) if r.vals[i] else None) * for i in range(r.nkeys)) */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_6_genexpr { PyObject_HEAD struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_5___get__ *__pyx_outer_scope; int __pyx_genexpr_arg_0; int __pyx_v_i; int __pyx_t_0; int __pyx_t_1; int __pyx_t_2; }; /* "pysam/libcbcf.pyx":1304 * raise KeyError('cannot find metadata key') * * def __iter__(self): # <<<<<<<<<<<<<< * cdef bcf_hrec_t *r = self.ptr * if not r: */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_7___iter__ { PyObject_HEAD int __pyx_v_i; bcf_hrec_t *__pyx_v_r; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self; int __pyx_t_0; int __pyx_t_1; int __pyx_t_2; }; /* "pysam/libcbcf.pyx":1332 * return iter(self) * * def itervalues(self): # <<<<<<<<<<<<<< * """D.itervalues() -> an iterator over the values of D""" * cdef bcf_hrec_t *r = self.ptr */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_8_itervalues { PyObject_HEAD int __pyx_v_i; bcf_hrec_t *__pyx_v_r; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self; int __pyx_t_0; int __pyx_t_1; int __pyx_t_2; }; /* "pysam/libcbcf.pyx":1342 * yield charptr_to_str(r.vals[i]) if r.vals[i] else None * * def iteritems(self): # <<<<<<<<<<<<<< * """D.iteritems() -> an iterator over the (key, value) items of D""" * cdef bcf_hrec_t *r = self.ptr */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_9_iteritems { PyObject_HEAD int __pyx_v_i; bcf_hrec_t *__pyx_v_r; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self; int __pyx_t_0; int __pyx_t_1; int __pyx_t_2; }; /* "pysam/libcbcf.pyx":1453 * return makeVariantHeaderRecord(self.header, self.header.ptr.hrec[i]) * * def __iter__(self): # <<<<<<<<<<<<<< * cdef int32_t i * for i in range(self.header.ptr.nhrec): */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_10___iter__ { PyObject_HEAD int32_t __pyx_v_i; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords *__pyx_v_self; int __pyx_t_0; int __pyx_t_1; int32_t __pyx_t_2; }; /* "pysam/libcbcf.pyx":1643 * #bcf_hdr_sync(hdr) * * def __iter__(self): # <<<<<<<<<<<<<< * cdef bcf_hdr_t *hdr = self.header.ptr * cdef bcf_idpair_t *idpair */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_11___iter__ { PyObject_HEAD bcf_hdr_t *__pyx_v_hdr; int32_t __pyx_v_i; bcf_idpair_t *__pyx_v_idpair; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self; int32_t __pyx_t_0; int32_t __pyx_t_1; int32_t __pyx_t_2; }; /* "pysam/libcbcf.pyx":1672 * return iter(self) * * def itervalues(self): # <<<<<<<<<<<<<< * """D.itervalues() -> an iterator over the values of D""" * for key in self: */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_12_itervalues { PyObject_HEAD PyObject *__pyx_v_key; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self; PyObject *__pyx_t_0; Py_ssize_t __pyx_t_1; PyObject *(*__pyx_t_2)(PyObject *); }; /* "pysam/libcbcf.pyx":1677 * yield self[key] * * def iteritems(self): # <<<<<<<<<<<<<< * """D.iteritems() -> an iterator over the (key, value) items of D""" * for key in self: */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_13_iteritems { PyObject_HEAD PyObject *__pyx_v_key; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self; PyObject *__pyx_t_0; Py_ssize_t __pyx_t_1; PyObject *(*__pyx_t_2)(PyObject *); }; /* "pysam/libcbcf.pyx":1823 * #bcf_hdr_sync(hdr) * * def __iter__(self): # <<<<<<<<<<<<<< * cdef bcf_hdr_t *hdr = self.header.ptr * cdef vdict_t *d = <vdict_t *>hdr.dict[BCF_DT_CTG] */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_14___iter__ { PyObject_HEAD vdict_t *__pyx_v_d; bcf_hdr_t *__pyx_v_hdr; uint32_t __pyx_v_i; uint32_t __pyx_v_n; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self; uint32_t __pyx_t_0; uint32_t __pyx_t_1; uint32_t __pyx_t_2; }; /* "pysam/libcbcf.pyx":1852 * return iter(self) * * def itervalues(self): # <<<<<<<<<<<<<< * """D.itervalues() -> an iterator over the values of D""" * for key in self: */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_15_itervalues { PyObject_HEAD PyObject *__pyx_v_key; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self; PyObject *__pyx_t_0; Py_ssize_t __pyx_t_1; PyObject *(*__pyx_t_2)(PyObject *); }; /* "pysam/libcbcf.pyx":1857 * yield self[key] * * def iteritems(self): # <<<<<<<<<<<<<< * """D.iteritems() -> an iterator over the (key, value) items of D""" * for key in self: */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_16_iteritems { PyObject_HEAD PyObject *__pyx_v_key; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self; PyObject *__pyx_t_0; Py_ssize_t __pyx_t_1; PyObject *(*__pyx_t_2)(PyObject *); }; /* "pysam/libcbcf.pyx":1922 * return charptr_to_str(hdr.samples[i]) * * def __iter__(self): # <<<<<<<<<<<<<< * cdef bcf_hdr_t *hdr = self.header.ptr * cdef int32_t i, n = bcf_hdr_nsamples(hdr) */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_17___iter__ { PyObject_HEAD bcf_hdr_t *__pyx_v_hdr; int32_t __pyx_v_i; int32_t __pyx_v_n; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples *__pyx_v_self; int32_t __pyx_t_0; int32_t __pyx_t_1; int32_t __pyx_t_2; }; /* "pysam/libcbcf.pyx":2321 * r.d.n_flt = 0 * * def __iter__(self): # <<<<<<<<<<<<<< * cdef bcf_hdr_t *hdr = self.record.header.ptr * cdef bcf1_t *r = self.record.ptr */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_18___iter__ { PyObject_HEAD bcf_hdr_t *__pyx_v_hdr; int __pyx_v_i; bcf1_t *__pyx_v_r; struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self; int __pyx_t_0; int __pyx_t_1; int __pyx_t_2; }; /* "pysam/libcbcf.pyx":2346 * return iter(self) * * def itervalues(self): # <<<<<<<<<<<<<< * """D.itervalues() -> an iterator over the values of D""" * for key in self: */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_19_itervalues { PyObject_HEAD PyObject *__pyx_v_key; struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self; PyObject *__pyx_t_0; Py_ssize_t __pyx_t_1; PyObject *(*__pyx_t_2)(PyObject *); }; /* "pysam/libcbcf.pyx":2351 * yield self[key] * * def iteritems(self): # <<<<<<<<<<<<<< * """D.iteritems() -> an iterator over the (key, value) items of D""" * for key in self: */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_20_iteritems { PyObject_HEAD PyObject *__pyx_v_key; struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self; PyObject *__pyx_t_0; Py_ssize_t __pyx_t_1; PyObject *(*__pyx_t_2)(PyObject *); }; /* "pysam/libcbcf.pyx":2465 * raise ValueError('Unable to delete FORMAT') * * def __iter__(self): # <<<<<<<<<<<<<< * cdef bcf_hdr_t *hdr = self.record.header.ptr * cdef bcf1_t *r = self.record.ptr */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_21___iter__ { PyObject_HEAD bcf_fmt_t *__pyx_v_fmt; bcf_hdr_t *__pyx_v_hdr; int __pyx_v_i; bcf1_t *__pyx_v_r; struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *__pyx_v_self; uint32_t __pyx_t_0; uint32_t __pyx_t_1; int __pyx_t_2; }; /* "pysam/libcbcf.pyx":2494 * return iter(self) * * def itervalues(self): # <<<<<<<<<<<<<< * """D.itervalues() -> an iterator over the values of D""" * for key in self: */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_22_itervalues { PyObject_HEAD PyObject *__pyx_v_key; struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *__pyx_v_self; PyObject *__pyx_t_0; Py_ssize_t __pyx_t_1; PyObject *(*__pyx_t_2)(PyObject *); }; /* "pysam/libcbcf.pyx":2499 * yield self[key] * * def iteritems(self): # <<<<<<<<<<<<<< * """D.iteritems() -> an iterator over the (key, value) items of D""" * for key in self: */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_23_iteritems { PyObject_HEAD PyObject *__pyx_v_key; struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *__pyx_v_self; PyObject *__pyx_t_0; Py_ssize_t __pyx_t_1; PyObject *(*__pyx_t_2)(PyObject *); }; /* "pysam/libcbcf.pyx":2671 * raise ValueError('Unable to delete INFO') * * def __iter__(self): # <<<<<<<<<<<<<< * cdef bcf_hdr_t *hdr = self.record.header.ptr * cdef bcf1_t *r = self.record.ptr */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_24___iter__ { PyObject_HEAD bcf_hdr_t *__pyx_v_hdr; int __pyx_v_i; bcf_info_t *__pyx_v_info; char const *__pyx_v_key; bcf1_t *__pyx_v_r; struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self; uint32_t __pyx_t_0; uint32_t __pyx_t_1; int __pyx_t_2; }; /* "pysam/libcbcf.pyx":2738 * return iter(self) * * def itervalues(self): # <<<<<<<<<<<<<< * """D.itervalues() -> an iterator over the values of D""" * cdef bcf_hdr_t *hdr = self.record.header.ptr */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_25_itervalues { PyObject_HEAD bcf_hdr_t *__pyx_v_hdr; int __pyx_v_i; bcf_info_t *__pyx_v_info; char const *__pyx_v_key; bcf1_t *__pyx_v_r; struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self; uint32_t __pyx_t_0; uint32_t __pyx_t_1; int __pyx_t_2; }; /* "pysam/libcbcf.pyx":2756 * yield bcf_info_get_value(self.record, info) * * def iteritems(self): # <<<<<<<<<<<<<< * """D.iteritems() -> an iterator over the (key, value) items of D""" * cdef bcf_hdr_t *hdr = self.record.header.ptr */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_26_iteritems { PyObject_HEAD bcf_hdr_t *__pyx_v_hdr; int __pyx_v_i; bcf_info_t *__pyx_v_info; char const *__pyx_v_key; bcf1_t *__pyx_v_r; struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self; PyObject *__pyx_v_value; uint32_t __pyx_t_0; uint32_t __pyx_t_1; int __pyx_t_2; }; /* "pysam/libcbcf.pyx":2899 * return makeVariantRecordSample(self.record, sample_index) * * def __iter__(self): # <<<<<<<<<<<<<< * cdef bcf_hdr_t *hdr = self.record.header.ptr * cdef bcf1_t *r = self.record.ptr */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_27___iter__ { PyObject_HEAD bcf_hdr_t *__pyx_v_hdr; int32_t __pyx_v_i; int32_t __pyx_v_n; bcf1_t *__pyx_v_r; struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_self; int32_t __pyx_t_0; int32_t __pyx_t_1; int32_t __pyx_t_2; }; /* "pysam/libcbcf.pyx":2936 * return iter(self) * * def itervalues(self): # <<<<<<<<<<<<<< * """D.itervalues() -> an iterator over the values of D""" * cdef bcf_hdr_t *hdr = self.record.header.ptr */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_28_itervalues { PyObject_HEAD bcf_hdr_t *__pyx_v_hdr; int32_t __pyx_v_i; int32_t __pyx_v_n; bcf1_t *__pyx_v_r; struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_self; int32_t __pyx_t_0; int32_t __pyx_t_1; int32_t __pyx_t_2; }; /* "pysam/libcbcf.pyx":2945 * yield makeVariantRecordSample(self.record, i) * * def iteritems(self): # <<<<<<<<<<<<<< * """D.iteritems() -> an iterator over the (key, value) items of D""" * cdef bcf_hdr_t *hdr = self.record.header.ptr */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_29_iteritems { PyObject_HEAD bcf_hdr_t *__pyx_v_hdr; int32_t __pyx_v_i; int32_t __pyx_v_n; bcf1_t *__pyx_v_r; struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_self; int32_t __pyx_t_0; int32_t __pyx_t_1; int32_t __pyx_t_2; }; /* "pysam/libcbcf.pyx":3477 * return bcf_format_get_alleles(self) * * @alleles.setter # <<<<<<<<<<<<<< * def alleles(self, value): * # Sets the genotype, supply a tuple of alleles to set. */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_30___set__ { PyObject_HEAD struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self; }; /* "pysam/libcbcf.pyx":3487 * return * * if any((type(x) == int for x in value)): # <<<<<<<<<<<<<< * raise ValueError('Use .allele_indices to set integer allele indices') * */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_31_genexpr { PyObject_HEAD PyObject *__pyx_genexpr_arg_0; PyObject *__pyx_v_x; }; /* "pysam/libcbcf.pyx":3492 * # determine and set allele indices: * try: * self['GT'] = tuple( (self.record.alleles.index(allele) for allele in value) ) # <<<<<<<<<<<<<< * except ValueError: * raise ValueError("One or more of the supplied sample alleles are not defined as alleles of the corresponding pysam.libcbcf.VariantRecord." */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_32_genexpr { PyObject_HEAD struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_30___set__ *__pyx_outer_scope; PyObject *__pyx_genexpr_arg_0; PyObject *__pyx_v_allele; PyObject *__pyx_t_0; Py_ssize_t __pyx_t_1; PyObject *(*__pyx_t_2)(PyObject *); }; /* "pysam/libcbcf.pyx":3557 * bcf_format_del_value(self, bcf_hdr_int2id(hdr, BCF_DT_ID, fmt.id)) * * def __iter__(self): # <<<<<<<<<<<<<< * cdef bcf_hdr_t *hdr = self.record.header.ptr * cdef bcf1_t *r = self.record.ptr */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_33___iter__ { PyObject_HEAD bcf_fmt_t *__pyx_v_fmt; bcf_hdr_t *__pyx_v_hdr; int __pyx_v_i; bcf1_t *__pyx_v_r; struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self; uint32_t __pyx_t_0; uint32_t __pyx_t_1; int __pyx_t_2; }; /* "pysam/libcbcf.pyx":3586 * return iter(self) * * def itervalues(self): # <<<<<<<<<<<<<< * """D.itervalues() -> an iterator over the values of D""" * for key in self: */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_34_itervalues { PyObject_HEAD PyObject *__pyx_v_key; struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self; PyObject *__pyx_t_0; Py_ssize_t __pyx_t_1; PyObject *(*__pyx_t_2)(PyObject *); }; /* "pysam/libcbcf.pyx":3591 * yield self[key] * * def iteritems(self): # <<<<<<<<<<<<<< * """D.iteritems() -> an iterator over the (key, value) items of D""" * for key in self: */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_35_iteritems { PyObject_HEAD PyObject *__pyx_v_key; struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self; PyObject *__pyx_t_0; Py_ssize_t __pyx_t_1; PyObject *(*__pyx_t_2)(PyObject *); }; /* "pysam/libcbcf.pyx":3701 * return iter(self) * * def itervalues(self): # <<<<<<<<<<<<<< * """D.itervalues() -> an iterator over the values of D""" * for key in self: */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_36_itervalues { PyObject_HEAD PyObject *__pyx_v_key; struct __pyx_obj_5pysam_7libcbcf_BaseIndex *__pyx_v_self; PyObject *__pyx_t_0; Py_ssize_t __pyx_t_1; PyObject *(*__pyx_t_2)(PyObject *); }; /* "pysam/libcbcf.pyx":3706 * yield self[key] * * def iteritems(self): # <<<<<<<<<<<<<< * """D.iteritems() -> an iterator over the (key, value) items of D""" * for key in self: */ struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_37_iteritems { PyObject_HEAD PyObject *__pyx_v_key; struct __pyx_obj_5pysam_7libcbcf_BaseIndex *__pyx_v_self; PyObject *__pyx_t_0; Py_ssize_t __pyx_t_1; PyObject *(*__pyx_t_2)(PyObject *); }; /* "pysam/libchtslib.pxd":2706 * * * cdef class HTSFile(object): # <<<<<<<<<<<<<< * cdef htsFile *htsfile # pointer to htsFile structure * cdef int64_t start_offset # BGZF offset of first record */ struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile { htsFile *(*_open_htsfile)(struct __pyx_obj_5pysam_10libchtslib_HTSFile *); }; static struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile *__pyx_vtabptr_5pysam_10libchtslib_HTSFile; /* "pysam/libcbcf.pyx":1957 * * * cdef class VariantHeader(object): # <<<<<<<<<<<<<< * """header information for a :class:`VariantFile` object""" * #FIXME: Add structured proxy */ struct __pyx_vtabstruct_5pysam_7libcbcf_VariantHeader { PyObject *(*_add_sample)(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *, PyObject *); PyObject *(*_hdr_sync)(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *); PyObject *(*_subset_samples)(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *, PyObject *); }; static struct __pyx_vtabstruct_5pysam_7libcbcf_VariantHeader *__pyx_vtabptr_5pysam_7libcbcf_VariantHeader; /* "pysam/libcbcf.pyx":4033 * * * cdef class VariantFile(HTSFile): # <<<<<<<<<<<<<< * """*(filename, mode=None, index_filename=None, header=None, drop_samples=False, * duplicate_filehandle=True, ignore_truncation=False, threads=1)* */ struct __pyx_vtabstruct_5pysam_7libcbcf_VariantFile { struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile __pyx_base; 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static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A6 #define __Pyx_PyErr_SetNone(exc) (Py_INCREF(exc), __Pyx_ErrRestore((exc), NULL, NULL)) #else #define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc) #endif #else #define __Pyx_PyErr_Clear() PyErr_Clear() #define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc) #define __Pyx_ErrRestoreWithState(type, value, tb) PyErr_Restore(type, value, tb) #define __Pyx_ErrFetchWithState(type, value, tb) PyErr_Fetch(type, value, tb) #define __Pyx_ErrRestoreInState(tstate, type, value, tb) PyErr_Restore(type, value, tb) #define __Pyx_ErrFetchInState(tstate, type, value, tb) PyErr_Fetch(type, value, tb) #define __Pyx_ErrRestore(type, value, tb) PyErr_Restore(type, value, tb) #define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb) #endif /* PyObjectGetAttrStr.proto */ #if CYTHON_USE_TYPE_SLOTS static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name); #else #define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n) #endif /* PyObjectGetAttrStrNoError.proto */ static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name); /* GetBuiltinName.proto */ static PyObject *__Pyx_GetBuiltinName(PyObject *name); /* TupleAndListFromArray.proto */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyList_FromArray(PyObject *const *src, Py_ssize_t n); static CYTHON_INLINE PyObject* __Pyx_PyTuple_FromArray(PyObject *const *src, Py_ssize_t n); #endif /* IncludeStringH.proto */ #include <string.h> /* BytesEquals.proto */ static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals); /* UnicodeEquals.proto */ static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals); /* fastcall.proto */ #if CYTHON_AVOID_BORROWED_REFS #define __Pyx_Arg_VARARGS(args, i) PySequence_GetItem(args, i) #elif CYTHON_ASSUME_SAFE_MACROS #define __Pyx_Arg_VARARGS(args, i) PyTuple_GET_ITEM(args, i) #else #define __Pyx_Arg_VARARGS(args, i) PyTuple_GetItem(args, i) #endif #if CYTHON_AVOID_BORROWED_REFS #define __Pyx_Arg_NewRef_VARARGS(arg) __Pyx_NewRef(arg) #define __Pyx_Arg_XDECREF_VARARGS(arg) Py_XDECREF(arg) #else #define __Pyx_Arg_NewRef_VARARGS(arg) arg #define __Pyx_Arg_XDECREF_VARARGS(arg) #endif #define __Pyx_NumKwargs_VARARGS(kwds) PyDict_Size(kwds) #define __Pyx_KwValues_VARARGS(args, nargs) NULL #define __Pyx_GetKwValue_VARARGS(kw, kwvalues, s) __Pyx_PyDict_GetItemStrWithError(kw, s) #define __Pyx_KwargsAsDict_VARARGS(kw, kwvalues) PyDict_Copy(kw) #if CYTHON_METH_FASTCALL #define __Pyx_Arg_FASTCALL(args, i) args[i] #define __Pyx_NumKwargs_FASTCALL(kwds) PyTuple_GET_SIZE(kwds) #define __Pyx_KwValues_FASTCALL(args, nargs) ((args) + (nargs)) static CYTHON_INLINE PyObject * __Pyx_GetKwValue_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues, PyObject *s); #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000 CYTHON_UNUSED static PyObject *__Pyx_KwargsAsDict_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues); #else #define __Pyx_KwargsAsDict_FASTCALL(kw, kwvalues) _PyStack_AsDict(kwvalues, kw) #endif #define __Pyx_Arg_NewRef_FASTCALL(arg) arg /* no-op, __Pyx_Arg_FASTCALL is direct and this needs to have the same reference counting */ #define __Pyx_Arg_XDECREF_FASTCALL(arg) #else #define __Pyx_Arg_FASTCALL __Pyx_Arg_VARARGS #define __Pyx_NumKwargs_FASTCALL __Pyx_NumKwargs_VARARGS #define __Pyx_KwValues_FASTCALL __Pyx_KwValues_VARARGS #define __Pyx_GetKwValue_FASTCALL __Pyx_GetKwValue_VARARGS #define __Pyx_KwargsAsDict_FASTCALL __Pyx_KwargsAsDict_VARARGS #define __Pyx_Arg_NewRef_FASTCALL(arg) __Pyx_Arg_NewRef_VARARGS(arg) #define __Pyx_Arg_XDECREF_FASTCALL(arg) __Pyx_Arg_XDECREF_VARARGS(arg) #endif #if CYTHON_COMPILING_IN_CPYTHON && CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS #define __Pyx_ArgsSlice_VARARGS(args, start, stop) __Pyx_PyTuple_FromArray(&__Pyx_Arg_VARARGS(args, start), stop - start) #define __Pyx_ArgsSlice_FASTCALL(args, start, stop) __Pyx_PyTuple_FromArray(&__Pyx_Arg_FASTCALL(args, start), stop - start) #else #define __Pyx_ArgsSlice_VARARGS(args, start, stop) PyTuple_GetSlice(args, start, stop) #define __Pyx_ArgsSlice_FASTCALL(args, start, stop) PyTuple_GetSlice(args, start, stop) #endif /* Profile.proto */ #ifndef CYTHON_PROFILE #if CYTHON_COMPILING_IN_LIMITED_API || CYTHON_COMPILING_IN_PYPY #define CYTHON_PROFILE 0 #else #define CYTHON_PROFILE 1 #endif #endif #ifndef CYTHON_TRACE_NOGIL #define CYTHON_TRACE_NOGIL 0 #else #if CYTHON_TRACE_NOGIL && !defined(CYTHON_TRACE) #define CYTHON_TRACE 1 #endif #endif #ifndef CYTHON_TRACE #define CYTHON_TRACE 0 #endif #if CYTHON_TRACE #undef CYTHON_PROFILE_REUSE_FRAME #endif #ifndef CYTHON_PROFILE_REUSE_FRAME #define CYTHON_PROFILE_REUSE_FRAME 0 #endif #if CYTHON_PROFILE || CYTHON_TRACE #include "compile.h" #include "frameobject.h" #include "traceback.h" #if PY_VERSION_HEX >= 0x030b00a6 #ifndef Py_BUILD_CORE #define Py_BUILD_CORE 1 #endif #include "internal/pycore_frame.h" #endif #if CYTHON_PROFILE_REUSE_FRAME #define CYTHON_FRAME_MODIFIER static #define CYTHON_FRAME_DEL(frame) #else #define CYTHON_FRAME_MODIFIER #define CYTHON_FRAME_DEL(frame) Py_CLEAR(frame) #endif #define __Pyx_TraceDeclarations\ static PyCodeObject *__pyx_frame_code = NULL;\ CYTHON_FRAME_MODIFIER PyFrameObject *__pyx_frame = NULL;\ int __Pyx_use_tracing = 0; #define __Pyx_TraceFrameInit(codeobj)\ if (codeobj) __pyx_frame_code = (PyCodeObject*) codeobj; #if PY_VERSION_HEX >= 0x030b00a2 #if PY_VERSION_HEX >= 0x030C00b1 #define __Pyx_IsTracing(tstate, check_tracing, check_funcs)\ ((!(check_tracing) || !(tstate)->tracing) &&\ (!(check_funcs) || (tstate)->c_profilefunc || (CYTHON_TRACE && (tstate)->c_tracefunc))) #else #define __Pyx_IsTracing(tstate, check_tracing, check_funcs)\ (unlikely((tstate)->cframe->use_tracing) &&\ (!(check_tracing) || !(tstate)->tracing) &&\ (!(check_funcs) || (tstate)->c_profilefunc || (CYTHON_TRACE && (tstate)->c_tracefunc))) #endif #define __Pyx_EnterTracing(tstate) PyThreadState_EnterTracing(tstate) #define __Pyx_LeaveTracing(tstate) PyThreadState_LeaveTracing(tstate) #elif PY_VERSION_HEX >= 0x030a00b1 #define __Pyx_IsTracing(tstate, check_tracing, check_funcs)\ (unlikely((tstate)->cframe->use_tracing) &&\ (!(check_tracing) || !(tstate)->tracing) &&\ (!(check_funcs) || (tstate)->c_profilefunc || (CYTHON_TRACE && (tstate)->c_tracefunc))) #define __Pyx_EnterTracing(tstate)\ do { tstate->tracing++; tstate->cframe->use_tracing = 0; } while (0) #define __Pyx_LeaveTracing(tstate)\ do {\ tstate->tracing--;\ tstate->cframe->use_tracing = ((CYTHON_TRACE && tstate->c_tracefunc != NULL)\ || tstate->c_profilefunc != NULL);\ } while (0) #else #define __Pyx_IsTracing(tstate, check_tracing, check_funcs)\ (unlikely((tstate)->use_tracing) &&\ (!(check_tracing) || !(tstate)->tracing) &&\ (!(check_funcs) || (tstate)->c_profilefunc || (CYTHON_TRACE && (tstate)->c_tracefunc))) #define __Pyx_EnterTracing(tstate)\ do { tstate->tracing++; tstate->use_tracing = 0; } while (0) #define __Pyx_LeaveTracing(tstate)\ do {\ tstate->tracing--;\ tstate->use_tracing = ((CYTHON_TRACE && tstate->c_tracefunc != NULL)\ || tstate->c_profilefunc != NULL);\ } while (0) #endif #ifdef WITH_THREAD #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\ if (nogil) {\ if (CYTHON_TRACE_NOGIL) {\ PyThreadState *tstate;\ PyGILState_STATE state = PyGILState_Ensure();\ tstate = __Pyx_PyThreadState_Current;\ if (__Pyx_IsTracing(tstate, 1, 1)) {\ __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, tstate, funcname, srcfile, firstlineno);\ }\ PyGILState_Release(state);\ if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ }\ } else {\ PyThreadState* tstate = PyThreadState_GET();\ if (__Pyx_IsTracing(tstate, 1, 1)) {\ __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, tstate, funcname, srcfile, firstlineno);\ if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ }\ } #else #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error)\ { PyThreadState* tstate = PyThreadState_GET();\ if (__Pyx_IsTracing(tstate, 1, 1)) {\ __Pyx_use_tracing = __Pyx_TraceSetupAndCall(&__pyx_frame_code, &__pyx_frame, tstate, funcname, srcfile, firstlineno);\ if (unlikely(__Pyx_use_tracing < 0)) goto_error;\ }\ } #endif #define __Pyx_TraceException()\ if (likely(!__Pyx_use_tracing)); else {\ PyThreadState* tstate = __Pyx_PyThreadState_Current;\ if (__Pyx_IsTracing(tstate, 0, 1)) {\ __Pyx_EnterTracing(tstate);\ PyObject *exc_info = __Pyx_GetExceptionTuple(tstate);\ if (exc_info) {\ if (CYTHON_TRACE && tstate->c_tracefunc)\ tstate->c_tracefunc(\ tstate->c_traceobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\ tstate->c_profilefunc(\ tstate->c_profileobj, __pyx_frame, PyTrace_EXCEPTION, exc_info);\ Py_DECREF(exc_info);\ }\ __Pyx_LeaveTracing(tstate);\ }\ } static void __Pyx_call_return_trace_func(PyThreadState *tstate, PyFrameObject *frame, PyObject *result) { PyObject *type, *value, *traceback; __Pyx_ErrFetchInState(tstate, &type, &value, &traceback); __Pyx_EnterTracing(tstate); if (CYTHON_TRACE && tstate->c_tracefunc) tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_RETURN, result); if (tstate->c_profilefunc) tstate->c_profilefunc(tstate->c_profileobj, frame, PyTrace_RETURN, result); CYTHON_FRAME_DEL(frame); __Pyx_LeaveTracing(tstate); __Pyx_ErrRestoreInState(tstate, type, value, traceback); } #ifdef WITH_THREAD #define __Pyx_TraceReturn(result, nogil)\ if (likely(!__Pyx_use_tracing)); else {\ if (nogil) {\ if (CYTHON_TRACE_NOGIL) {\ PyThreadState *tstate;\ PyGILState_STATE state = PyGILState_Ensure();\ tstate = __Pyx_PyThreadState_Current;\ if (__Pyx_IsTracing(tstate, 0, 0)) {\ __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ }\ PyGILState_Release(state);\ }\ } else {\ PyThreadState* tstate = __Pyx_PyThreadState_Current;\ if (__Pyx_IsTracing(tstate, 0, 0)) {\ __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ }\ }\ } #else #define __Pyx_TraceReturn(result, nogil)\ if (likely(!__Pyx_use_tracing)); else {\ PyThreadState* tstate = __Pyx_PyThreadState_Current;\ if (__Pyx_IsTracing(tstate, 0, 0)) {\ __Pyx_call_return_trace_func(tstate, __pyx_frame, (PyObject*)result);\ }\ } #endif static PyCodeObject *__Pyx_createFrameCodeObject(const char *funcname, const char *srcfile, int firstlineno); static int __Pyx_TraceSetupAndCall(PyCodeObject** code, PyFrameObject** frame, PyThreadState* tstate, const char *funcname, const char *srcfile, int firstlineno); #else #define __Pyx_TraceDeclarations #define __Pyx_TraceFrameInit(codeobj) #define __Pyx_TraceCall(funcname, srcfile, firstlineno, nogil, goto_error) if ((1)); else goto_error; #define __Pyx_TraceException() #define __Pyx_TraceReturn(result, nogil) #endif #if CYTHON_TRACE static int __Pyx_call_line_trace_func(PyThreadState *tstate, PyFrameObject *frame, int lineno) { int ret; PyObject *type, *value, *traceback; __Pyx_ErrFetchInState(tstate, &type, &value, &traceback); __Pyx_PyFrame_SetLineNumber(frame, lineno); __Pyx_EnterTracing(tstate); ret = tstate->c_tracefunc(tstate->c_traceobj, frame, PyTrace_LINE, NULL); __Pyx_LeaveTracing(tstate); if (likely(!ret)) { __Pyx_ErrRestoreInState(tstate, type, value, traceback); } else { Py_XDECREF(type); Py_XDECREF(value); Py_XDECREF(traceback); } return ret; } #ifdef WITH_THREAD #define __Pyx_TraceLine(lineno, nogil, goto_error)\ if (likely(!__Pyx_use_tracing)); else {\ if (nogil) {\ if (CYTHON_TRACE_NOGIL) {\ int ret = 0;\ PyThreadState *tstate;\ PyGILState_STATE state = __Pyx_PyGILState_Ensure();\ tstate = __Pyx_PyThreadState_Current;\ if (__Pyx_IsTracing(tstate, 0, 0) && tstate->c_tracefunc && __pyx_frame->f_trace) {\ ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ }\ __Pyx_PyGILState_Release(state);\ if (unlikely(ret)) goto_error;\ }\ } else {\ PyThreadState* tstate = __Pyx_PyThreadState_Current;\ if (__Pyx_IsTracing(tstate, 0, 0) && tstate->c_tracefunc && __pyx_frame->f_trace) {\ int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ if (unlikely(ret)) goto_error;\ }\ }\ } #else #define __Pyx_TraceLine(lineno, nogil, goto_error)\ if (likely(!__Pyx_use_tracing)); else {\ PyThreadState* tstate = __Pyx_PyThreadState_Current;\ if (__Pyx_IsTracing(tstate, 0, 0) && tstate->c_tracefunc && __pyx_frame->f_trace) {\ int ret = __Pyx_call_line_trace_func(tstate, __pyx_frame, lineno);\ if (unlikely(ret)) goto_error;\ }\ } #endif #else #define __Pyx_TraceLine(lineno, nogil, goto_error) if ((1)); else goto_error; #endif /* DivInt[long].proto */ static CYTHON_INLINE long __Pyx_div_long(long, long); /* PyObjectCall.proto */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw); #else #define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw) #endif /* PyIntBinop.proto */ #if !CYTHON_COMPILING_IN_PYPY static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check); #else #define __Pyx_PyInt_AddObjC(op1, op2, intval, inplace, zerodivision_check)\ (inplace ? PyNumber_InPlaceAdd(op1, op2) : PyNumber_Add(op1, op2)) #endif /* RaiseException.proto */ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); /* AssertionsEnabled.proto */ #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag) #define __Pyx_init_assertions_enabled() (0) #define __pyx_assertions_enabled() (1) #elif CYTHON_COMPILING_IN_LIMITED_API || (CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030C0000) static int __pyx_assertions_enabled_flag; #define __pyx_assertions_enabled() (__pyx_assertions_enabled_flag) static int __Pyx_init_assertions_enabled(void) { PyObject *builtins, *debug, *debug_str; int flag; builtins = PyEval_GetBuiltins(); if (!builtins) goto bad; debug_str = PyUnicode_FromStringAndSize("__debug__", 9); if (!debug_str) goto bad; debug = PyObject_GetItem(builtins, debug_str); Py_DECREF(debug_str); if (!debug) goto bad; flag = PyObject_IsTrue(debug); Py_DECREF(debug); if (flag == -1) goto bad; __pyx_assertions_enabled_flag = flag; return 0; bad: __pyx_assertions_enabled_flag = 1; return -1; } #else #define __Pyx_init_assertions_enabled() (0) #define __pyx_assertions_enabled() (!Py_OptimizeFlag) #endif /* GetException.proto */ #if CYTHON_FAST_THREAD_STATE #define __Pyx_GetException(type, value, tb) __Pyx__GetException(__pyx_tstate, type, value, tb) static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); #else static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb); #endif /* pep479.proto */ static void __Pyx_Generator_Replace_StopIteration(int in_async_gen); /* SwapException.proto */ #if CYTHON_FAST_THREAD_STATE #define __Pyx_ExceptionSwap(type, value, tb) __Pyx__ExceptionSwap(__pyx_tstate, type, value, tb) static CYTHON_INLINE void __Pyx__ExceptionSwap(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); #else static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb); #endif /* GetTopmostException.proto */ #if CYTHON_USE_EXC_INFO_STACK && CYTHON_FAST_THREAD_STATE static _PyErr_StackItem * __Pyx_PyErr_GetTopmostException(PyThreadState *tstate); #endif /* SaveResetException.proto */ #if CYTHON_FAST_THREAD_STATE #define __Pyx_ExceptionSave(type, value, tb) __Pyx__ExceptionSave(__pyx_tstate, type, value, tb) static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); #define __Pyx_ExceptionReset(type, value, tb) __Pyx__ExceptionReset(__pyx_tstate, type, value, tb) static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); #else #define __Pyx_ExceptionSave(type, value, tb) PyErr_GetExcInfo(type, value, tb) #define __Pyx_ExceptionReset(type, value, tb) PyErr_SetExcInfo(type, value, tb) #endif /* RaiseUnboundLocalError.proto */ static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname); /* UnpackUnboundCMethod.proto */ typedef struct { PyObject *type; PyObject **method_name; PyCFunction func; PyObject *method; int flag; } __Pyx_CachedCFunction; /* CallUnboundCMethod1.proto */ static PyObject* __Pyx__CallUnboundCMethod1(__Pyx_CachedCFunction* cfunc, PyObject* self, PyObject* arg); #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_CallUnboundCMethod1(__Pyx_CachedCFunction* cfunc, PyObject* self, PyObject* arg); #else #define __Pyx_CallUnboundCMethod1(cfunc, self, arg) __Pyx__CallUnboundCMethod1(cfunc, self, arg) #endif /* RaiseUnexpectedTypeError.proto */ static int __Pyx_RaiseUnexpectedTypeError(const char *expected, PyObject *obj); /* ListAppend.proto */ #if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) { PyListObject* L = (PyListObject*) list; Py_ssize_t len = Py_SIZE(list); if (likely(L->allocated > len) & likely(len > (L->allocated >> 1))) { Py_INCREF(x); #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000 L->ob_item[len] = x; #else PyList_SET_ITEM(list, len, x); #endif __Pyx_SET_SIZE(list, len + 1); return 0; } return PyList_Append(list, x); } #else #define __Pyx_PyList_Append(L,x) PyList_Append(L,x) #endif /* PyFunctionFastCall.proto */ #if CYTHON_FAST_PYCALL #if !CYTHON_VECTORCALL #define __Pyx_PyFunction_FastCall(func, args, nargs)\ __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL) static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs); #endif #define __Pyx_BUILD_ASSERT_EXPR(cond)\ (sizeof(char [1 - 2*!(cond)]) - 1) #ifndef Py_MEMBER_SIZE #define Py_MEMBER_SIZE(type, member) sizeof(((type *)0)->member) #endif #if !CYTHON_VECTORCALL #if PY_VERSION_HEX >= 0x03080000 #include "frameobject.h" #if PY_VERSION_HEX >= 0x030b00a6 && !CYTHON_COMPILING_IN_LIMITED_API #ifndef Py_BUILD_CORE #define Py_BUILD_CORE 1 #endif #include "internal/pycore_frame.h" #endif #define __Pxy_PyFrame_Initialize_Offsets() #define __Pyx_PyFrame_GetLocalsplus(frame) ((frame)->f_localsplus) #else static size_t __pyx_pyframe_localsplus_offset = 0; #include "frameobject.h" #define __Pxy_PyFrame_Initialize_Offsets()\ ((void)__Pyx_BUILD_ASSERT_EXPR(sizeof(PyFrameObject) == offsetof(PyFrameObject, f_localsplus) + Py_MEMBER_SIZE(PyFrameObject, f_localsplus)),\ (void)(__pyx_pyframe_localsplus_offset = ((size_t)PyFrame_Type.tp_basicsize) - Py_MEMBER_SIZE(PyFrameObject, f_localsplus))) #define __Pyx_PyFrame_GetLocalsplus(frame)\ (assert(__pyx_pyframe_localsplus_offset), (PyObject **)(((char *)(frame)) + __pyx_pyframe_localsplus_offset)) #endif #endif #endif /* PyObjectCallMethO.proto */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg); #endif /* PyObjectFastCall.proto */ #define __Pyx_PyObject_FastCall(func, args, nargs) __Pyx_PyObject_FastCallDict(func, args, (size_t)(nargs), NULL) static CYTHON_INLINE PyObject* __Pyx_PyObject_FastCallDict(PyObject *func, PyObject **args, size_t nargs, PyObject *kwargs); /* PyObjectCall2Args.proto */ static CYTHON_INLINE PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2); /* PyObjectCallOneArg.proto */ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg); /* PyObjectGetMethod.proto */ static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method); /* PyObjectCallMethod1.proto */ static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg); /* append.proto */ static CYTHON_INLINE int __Pyx_PyObject_Append(PyObject* L, PyObject* x); /* PySequenceMultiply.proto */ #define __Pyx_PySequence_Multiply_Left(mul, seq) __Pyx_PySequence_Multiply(seq, mul) static CYTHON_INLINE PyObject* __Pyx_PySequence_Multiply(PyObject *seq, Py_ssize_t mul); /* GetItemInt.proto */ #define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) :\ (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\ __Pyx_GetItemInt_Generic(o, to_py_func(i)))) #define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL)) static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, int wraparound, int boundscheck); #define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL)) static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, int wraparound, int boundscheck); static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j); static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list, int wraparound, int boundscheck); /* StringJoin.proto */ #if PY_MAJOR_VERSION < 3 #define __Pyx_PyString_Join __Pyx_PyBytes_Join #define __Pyx_PyBaseString_Join(s, v) (PyUnicode_CheckExact(s) ? PyUnicode_Join(s, v) : __Pyx_PyBytes_Join(s, v)) #else #define __Pyx_PyString_Join PyUnicode_Join #define __Pyx_PyBaseString_Join PyUnicode_Join #endif static CYTHON_INLINE PyObject* __Pyx_PyBytes_Join(PyObject* sep, PyObject* values); /* PyIntCompare.proto */ static CYTHON_INLINE int __Pyx_PyInt_BoolNeObjC(PyObject *op1, PyObject *op2, long intval, long inplace); /* PyObjectSetAttrStr.proto */ #if CYTHON_USE_TYPE_SLOTS #define __Pyx_PyObject_DelAttrStr(o,n) __Pyx_PyObject_SetAttrStr(o, n, NULL) static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value); #else #define __Pyx_PyObject_DelAttrStr(o,n) PyObject_DelAttr(o,n) #define __Pyx_PyObject_SetAttrStr(o,n,v) PyObject_SetAttr(o,n,v) #endif /* KeywordStringCheck.proto */ static int __Pyx_CheckKeywordStrings(PyObject *kw, const char* function_name, int kw_allowed); /* RaiseDoubleKeywords.proto */ static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name); /* ParseKeywords.proto */ static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject *const *kwvalues, PyObject **argnames[], PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, const char* function_name); /* RaiseArgTupleInvalid.proto */ static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); /* ObjectGetItem.proto */ #if CYTHON_USE_TYPE_SLOTS static CYTHON_INLINE PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject *key); #else #define __Pyx_PyObject_GetItem(obj, key) PyObject_GetItem(obj, key) #endif /* IterFinish.proto */ static CYTHON_INLINE int __Pyx_IterFinish(void); /* PyObjectCallNoArg.proto */ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func); /* PyObjectCallMethod0.proto */ static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name); /* RaiseNeedMoreValuesToUnpack.proto */ static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index); /* RaiseTooManyValuesToUnpack.proto */ static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); /* UnpackItemEndCheck.proto */ static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected); /* RaiseNoneIterError.proto */ static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void); /* UnpackTupleError.proto */ static void __Pyx_UnpackTupleError(PyObject *, Py_ssize_t index); /* UnpackTuple2.proto */ #define __Pyx_unpack_tuple2(tuple, value1, value2, is_tuple, has_known_size, decref_tuple)\ (likely(is_tuple || PyTuple_Check(tuple)) ?\ (likely(has_known_size || PyTuple_GET_SIZE(tuple) == 2) ?\ __Pyx_unpack_tuple2_exact(tuple, value1, value2, decref_tuple) :\ (__Pyx_UnpackTupleError(tuple, 2), -1)) :\ __Pyx_unpack_tuple2_generic(tuple, value1, value2, has_known_size, decref_tuple)) static CYTHON_INLINE int __Pyx_unpack_tuple2_exact( PyObject* tuple, PyObject** value1, PyObject** value2, int decref_tuple); static int __Pyx_unpack_tuple2_generic( PyObject* tuple, PyObject** value1, PyObject** value2, int has_known_size, int decref_tuple); /* dict_iter.proto */ static CYTHON_INLINE PyObject* __Pyx_dict_iterator(PyObject* dict, int is_dict, PyObject* method_name, Py_ssize_t* p_orig_length, int* p_is_dict); static CYTHON_INLINE int __Pyx_dict_iter_next(PyObject* dict_or_iter, Py_ssize_t orig_length, Py_ssize_t* ppos, PyObject** pkey, PyObject** pvalue, PyObject** pitem, int is_dict); /* GetAttr3.proto */ static CYTHON_INLINE PyObject *__Pyx_GetAttr3(PyObject *, PyObject *, PyObject *); /* PyDictVersioning.proto */ #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS #define __PYX_DICT_VERSION_INIT ((PY_UINT64_T) -1) #define __PYX_GET_DICT_VERSION(dict) (((PyDictObject*)(dict))->ma_version_tag) #define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var)\ (version_var) = __PYX_GET_DICT_VERSION(dict);\ (cache_var) = (value); #define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) {\ static PY_UINT64_T __pyx_dict_version = 0;\ static PyObject *__pyx_dict_cached_value = NULL;\ if (likely(__PYX_GET_DICT_VERSION(DICT) == __pyx_dict_version)) {\ (VAR) = __pyx_dict_cached_value;\ } else {\ (VAR) = __pyx_dict_cached_value = (LOOKUP);\ __pyx_dict_version = __PYX_GET_DICT_VERSION(DICT);\ }\ } static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj); static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj); static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version); #else #define __PYX_GET_DICT_VERSION(dict) (0) #define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var) #define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) (VAR) = (LOOKUP); #endif /* GetModuleGlobalName.proto */ #if CYTHON_USE_DICT_VERSIONS #define __Pyx_GetModuleGlobalName(var, name) do {\ static PY_UINT64_T __pyx_dict_version = 0;\ static PyObject *__pyx_dict_cached_value = NULL;\ (var) = (likely(__pyx_dict_version == __PYX_GET_DICT_VERSION(__pyx_d))) ?\ (likely(__pyx_dict_cached_value) ? __Pyx_NewRef(__pyx_dict_cached_value) : __Pyx_GetBuiltinName(name)) :\ __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\ } while(0) #define __Pyx_GetModuleGlobalNameUncached(var, name) do {\ PY_UINT64_T __pyx_dict_version;\ PyObject *__pyx_dict_cached_value;\ (var) = __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\ } while(0) static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value); #else #define __Pyx_GetModuleGlobalName(var, name) (var) = __Pyx__GetModuleGlobalName(name) #define __Pyx_GetModuleGlobalNameUncached(var, name) (var) = __Pyx__GetModuleGlobalName(name) static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name); #endif /* PySequenceContains.proto */ static CYTHON_INLINE int __Pyx_PySequence_ContainsTF(PyObject* item, PyObject* seq, int eq) { int result = PySequence_Contains(seq, item); return unlikely(result < 0) ? result : (result == (eq == Py_EQ)); } /* py_dict_items.proto */ static CYTHON_INLINE PyObject* __Pyx_PyDict_Items(PyObject* d); /* CallUnboundCMethod0.proto */ static PyObject* __Pyx__CallUnboundCMethod0(__Pyx_CachedCFunction* cfunc, PyObject* self); #if CYTHON_COMPILING_IN_CPYTHON #define __Pyx_CallUnboundCMethod0(cfunc, self)\ (likely((cfunc)->func) ?\ (likely((cfunc)->flag == METH_NOARGS) ? (*((cfunc)->func))(self, NULL) :\ (PY_VERSION_HEX >= 0x030600B1 && likely((cfunc)->flag == METH_FASTCALL) ?\ (PY_VERSION_HEX >= 0x030700A0 ?\ (*(__Pyx_PyCFunctionFast)(void*)(PyCFunction)(cfunc)->func)(self, &__pyx_empty_tuple, 0) :\ (*(__Pyx_PyCFunctionFastWithKeywords)(void*)(PyCFunction)(cfunc)->func)(self, &__pyx_empty_tuple, 0, NULL)) :\ (PY_VERSION_HEX >= 0x030700A0 && (cfunc)->flag == (METH_FASTCALL | METH_KEYWORDS) ?\ (*(__Pyx_PyCFunctionFastWithKeywords)(void*)(PyCFunction)(cfunc)->func)(self, &__pyx_empty_tuple, 0, NULL) :\ (likely((cfunc)->flag == (METH_VARARGS | METH_KEYWORDS)) ? ((*(PyCFunctionWithKeywords)(void*)(PyCFunction)(cfunc)->func)(self, __pyx_empty_tuple, NULL)) :\ ((cfunc)->flag == METH_VARARGS ? (*((cfunc)->func))(self, __pyx_empty_tuple) :\ __Pyx__CallUnboundCMethod0(cfunc, self)))))) :\ __Pyx__CallUnboundCMethod0(cfunc, self)) #else #define __Pyx_CallUnboundCMethod0(cfunc, self) __Pyx__CallUnboundCMethod0(cfunc, self) #endif /* WriteUnraisableException.proto */ static void __Pyx_WriteUnraisable(const char *name, int clineno, int lineno, const char *filename, int full_traceback, int nogil); /* ArgTypeTest.proto */ #define __Pyx_ArgTypeTest(obj, type, none_allowed, name, exact)\ ((likely(__Pyx_IS_TYPE(obj, type) | (none_allowed && (obj == Py_None)))) ? 1 :\ __Pyx__ArgTypeTest(obj, type, name, exact)) static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact); /* DictGetItem.proto */ #if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key); #define __Pyx_PyObject_Dict_GetItem(obj, name)\ (likely(PyDict_CheckExact(obj)) ?\ __Pyx_PyDict_GetItem(obj, name) : PyObject_GetItem(obj, name)) #else #define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key) #define __Pyx_PyObject_Dict_GetItem(obj, name) PyObject_GetItem(obj, name) #endif /* PyObject_Unicode.proto */ #if PY_MAJOR_VERSION >= 3 #define __Pyx_PyObject_Unicode(obj)\ (likely(PyUnicode_CheckExact(obj)) ? __Pyx_NewRef(obj) : PyObject_Str(obj)) #else #define __Pyx_PyObject_Unicode(obj)\ (likely(PyUnicode_CheckExact(obj)) ? __Pyx_NewRef(obj) : PyObject_Unicode(obj)) #endif /* py_dict_pop.proto */ static CYTHON_INLINE PyObject *__Pyx_PyDict_Pop(PyObject *d, PyObject *key, PyObject *default_value); /* CallUnboundCMethod2.proto */ static PyObject* __Pyx__CallUnboundCMethod2(__Pyx_CachedCFunction* cfunc, PyObject* self, PyObject* arg1, PyObject* arg2); #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030600B1 static CYTHON_INLINE PyObject *__Pyx_CallUnboundCMethod2(__Pyx_CachedCFunction *cfunc, PyObject *self, PyObject *arg1, PyObject *arg2); #else #define __Pyx_CallUnboundCMethod2(cfunc, self, arg1, arg2) __Pyx__CallUnboundCMethod2(cfunc, self, arg1, arg2) #endif /* ListCompAppend.proto */ #if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) { PyListObject* L = (PyListObject*) list; Py_ssize_t len = Py_SIZE(list); if (likely(L->allocated > len)) { Py_INCREF(x); #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000 L->ob_item[len] = x; #else PyList_SET_ITEM(list, len, x); #endif __Pyx_SET_SIZE(list, len + 1); return 0; } return PyList_Append(list, x); } #else #define __Pyx_ListComp_Append(L,x) PyList_Append(L,x) #endif /* SetItemInt.proto */ #define __Pyx_SetItemInt(o, i, v, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ __Pyx_SetItemInt_Fast(o, (Py_ssize_t)i, v, is_list, wraparound, boundscheck) :\ (is_list ? (PyErr_SetString(PyExc_IndexError, "list assignment index out of range"), -1) :\ __Pyx_SetItemInt_Generic(o, to_py_func(i), v))) static int __Pyx_SetItemInt_Generic(PyObject *o, PyObject *j, PyObject *v); static CYTHON_INLINE int __Pyx_SetItemInt_Fast(PyObject *o, Py_ssize_t i, PyObject *v, int is_list, int wraparound, int boundscheck); /* PyIntBinop.proto */ #if !CYTHON_COMPILING_IN_PYPY static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check); #else #define __Pyx_PyInt_SubtractObjC(op1, op2, intval, inplace, zerodivision_check)\ (inplace ? PyNumber_InPlaceSubtract(op1, op2) : PyNumber_Subtract(op1, op2)) #endif /* RaiseClosureNameError.proto */ static CYTHON_INLINE void __Pyx_RaiseClosureNameError(const char *varname); /* ExtTypeTest.proto */ static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); /* PyUnicodeContains.proto */ static CYTHON_INLINE int __Pyx_PyUnicode_ContainsTF(PyObject* substring, PyObject* text, int eq) { int result = PyUnicode_Contains(text, substring); return unlikely(result < 0) ? result : (result == (eq == Py_EQ)); } /* SliceObject.proto */ static CYTHON_INLINE PyObject* __Pyx_PyObject_GetSlice( PyObject* obj, Py_ssize_t cstart, Py_ssize_t cstop, PyObject** py_start, PyObject** py_stop, PyObject** py_slice, int has_cstart, int has_cstop, int wraparound); /* Import.proto */ static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); /* ImportFrom.proto */ static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name); /* GetAttr.proto */ static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *, PyObject *); /* HasAttr.proto */ static CYTHON_INLINE int __Pyx_HasAttr(PyObject *, PyObject *); /* CallNextTpDealloc.proto */ static void __Pyx_call_next_tp_dealloc(PyObject* obj, destructor current_tp_dealloc); /* CallNextTpTraverse.proto */ static int __Pyx_call_next_tp_traverse(PyObject* obj, visitproc v, void *a, traverseproc current_tp_traverse); /* CallNextTpClear.proto */ static void __Pyx_call_next_tp_clear(PyObject* obj, inquiry current_tp_clear); /* IncludeStructmemberH.proto */ #include <structmember.h> /* FixUpExtensionType.proto */ #if CYTHON_USE_TYPE_SPECS static int __Pyx_fix_up_extension_type_from_spec(PyType_Spec *spec, PyTypeObject *type); #endif /* ValidateBasesTuple.proto */ #if CYTHON_COMPILING_IN_CPYTHON || CYTHON_COMPILING_IN_LIMITED_API || CYTHON_USE_TYPE_SPECS static int __Pyx_validate_bases_tuple(const char *type_name, Py_ssize_t dictoffset, PyObject *bases); #endif /* PyType_Ready.proto */ CYTHON_UNUSED static int __Pyx_PyType_Ready(PyTypeObject *t); /* PyObject_GenericGetAttrNoDict.proto */ #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name); #else #define __Pyx_PyObject_GenericGetAttrNoDict PyObject_GenericGetAttr #endif /* PyObject_GenericGetAttr.proto */ #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name); #else #define __Pyx_PyObject_GenericGetAttr PyObject_GenericGetAttr #endif /* SetVTable.proto */ static int __Pyx_SetVtable(PyTypeObject* typeptr , void* vtable); /* GetVTable.proto */ static void* __Pyx_GetVtable(PyTypeObject *type); /* MergeVTables.proto */ #if !CYTHON_COMPILING_IN_LIMITED_API static int __Pyx_MergeVtables(PyTypeObject *type); #endif /* SetupReduce.proto */ #if !CYTHON_COMPILING_IN_LIMITED_API static int __Pyx_setup_reduce(PyObject* type_obj); #endif /* TypeImport.proto */ #ifndef __PYX_HAVE_RT_ImportType_proto_3_0_11 #define __PYX_HAVE_RT_ImportType_proto_3_0_11 #if defined (__STDC_VERSION__) && __STDC_VERSION__ >= 201112L #include <stdalign.h> #endif #if (defined (__STDC_VERSION__) && __STDC_VERSION__ >= 201112L) || __cplusplus >= 201103L #define __PYX_GET_STRUCT_ALIGNMENT_3_0_11(s) alignof(s) #else #define __PYX_GET_STRUCT_ALIGNMENT_3_0_11(s) sizeof(void*) #endif enum __Pyx_ImportType_CheckSize_3_0_11 { __Pyx_ImportType_CheckSize_Error_3_0_11 = 0, __Pyx_ImportType_CheckSize_Warn_3_0_11 = 1, __Pyx_ImportType_CheckSize_Ignore_3_0_11 = 2 }; static PyTypeObject *__Pyx_ImportType_3_0_11(PyObject* module, const char *module_name, const char *class_name, size_t size, size_t alignment, enum __Pyx_ImportType_CheckSize_3_0_11 check_size); #endif /* ImportDottedModule.proto */ static PyObject *__Pyx_ImportDottedModule(PyObject *name, PyObject *parts_tuple); #if PY_MAJOR_VERSION >= 3 static PyObject *__Pyx_ImportDottedModule_WalkParts(PyObject *module, PyObject *name, PyObject *parts_tuple); #endif /* FetchSharedCythonModule.proto */ static PyObject *__Pyx_FetchSharedCythonABIModule(void); /* FetchCommonType.proto */ #if !CYTHON_USE_TYPE_SPECS static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type); #else static PyTypeObject* __Pyx_FetchCommonTypeFromSpec(PyObject *module, PyType_Spec *spec, PyObject *bases); #endif /* PyMethodNew.proto */ #if CYTHON_COMPILING_IN_LIMITED_API static PyObject *__Pyx_PyMethod_New(PyObject *func, PyObject *self, PyObject *typ) { PyObject *typesModule=NULL, *methodType=NULL, *result=NULL; CYTHON_UNUSED_VAR(typ); if (!self) return __Pyx_NewRef(func); typesModule = PyImport_ImportModule("types"); if (!typesModule) return NULL; methodType = PyObject_GetAttrString(typesModule, "MethodType"); Py_DECREF(typesModule); if (!methodType) return NULL; result = PyObject_CallFunctionObjArgs(methodType, func, self, NULL); Py_DECREF(methodType); return result; } #elif PY_MAJOR_VERSION >= 3 static PyObject *__Pyx_PyMethod_New(PyObject *func, PyObject *self, PyObject *typ) { CYTHON_UNUSED_VAR(typ); if (!self) return __Pyx_NewRef(func); return PyMethod_New(func, self); } #else #define __Pyx_PyMethod_New PyMethod_New #endif /* PyVectorcallFastCallDict.proto */ #if CYTHON_METH_FASTCALL static CYTHON_INLINE PyObject *__Pyx_PyVectorcall_FastCallDict(PyObject *func, __pyx_vectorcallfunc vc, PyObject *const *args, size_t nargs, PyObject *kw); #endif /* CythonFunctionShared.proto */ #define __Pyx_CyFunction_USED #define __Pyx_CYFUNCTION_STATICMETHOD 0x01 #define __Pyx_CYFUNCTION_CLASSMETHOD 0x02 #define __Pyx_CYFUNCTION_CCLASS 0x04 #define __Pyx_CYFUNCTION_COROUTINE 0x08 #define __Pyx_CyFunction_GetClosure(f)\ (((__pyx_CyFunctionObject *) (f))->func_closure) #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API #define __Pyx_CyFunction_GetClassObj(f)\ (((__pyx_CyFunctionObject *) (f))->func_classobj) #else #define __Pyx_CyFunction_GetClassObj(f)\ ((PyObject*) ((PyCMethodObject *) (f))->mm_class) #endif #define __Pyx_CyFunction_SetClassObj(f, classobj)\ __Pyx__CyFunction_SetClassObj((__pyx_CyFunctionObject *) (f), (classobj)) #define __Pyx_CyFunction_Defaults(type, f)\ ((type *)(((__pyx_CyFunctionObject *) (f))->defaults)) #define __Pyx_CyFunction_SetDefaultsGetter(f, g)\ ((__pyx_CyFunctionObject *) (f))->defaults_getter = (g) typedef struct { #if CYTHON_COMPILING_IN_LIMITED_API PyObject_HEAD PyObject *func; #elif PY_VERSION_HEX < 0x030900B1 PyCFunctionObject func; #else PyCMethodObject func; #endif #if CYTHON_BACKPORT_VECTORCALL __pyx_vectorcallfunc func_vectorcall; #endif #if PY_VERSION_HEX < 0x030500A0 || CYTHON_COMPILING_IN_LIMITED_API PyObject *func_weakreflist; #endif PyObject *func_dict; PyObject *func_name; PyObject *func_qualname; PyObject *func_doc; PyObject *func_globals; PyObject *func_code; PyObject *func_closure; #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API PyObject *func_classobj; #endif void *defaults; int defaults_pyobjects; size_t defaults_size; int flags; PyObject *defaults_tuple; PyObject *defaults_kwdict; PyObject *(*defaults_getter)(PyObject *); PyObject *func_annotations; PyObject *func_is_coroutine; } __pyx_CyFunctionObject; #undef __Pyx_CyOrPyCFunction_Check #define __Pyx_CyFunction_Check(obj) __Pyx_TypeCheck(obj, __pyx_CyFunctionType) #define __Pyx_CyOrPyCFunction_Check(obj) __Pyx_TypeCheck2(obj, __pyx_CyFunctionType, &PyCFunction_Type) #define __Pyx_CyFunction_CheckExact(obj) __Pyx_IS_TYPE(obj, __pyx_CyFunctionType) static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void *cfunc); #undef __Pyx_IsSameCFunction #define __Pyx_IsSameCFunction(func, cfunc) __Pyx__IsSameCyOrCFunction(func, cfunc) static PyObject *__Pyx_CyFunction_Init(__pyx_CyFunctionObject* op, PyMethodDef *ml, int flags, PyObject* qualname, PyObject *closure, PyObject *module, PyObject *globals, PyObject* code); static CYTHON_INLINE void __Pyx__CyFunction_SetClassObj(__pyx_CyFunctionObject* f, PyObject* classobj); static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *m, size_t size, int pyobjects); static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *m, PyObject *tuple); static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *m, PyObject *dict); static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *m, PyObject *dict); static int __pyx_CyFunction_init(PyObject *module); #if CYTHON_METH_FASTCALL static PyObject * __Pyx_CyFunction_Vectorcall_NOARGS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); static PyObject * __Pyx_CyFunction_Vectorcall_O(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames); #if CYTHON_BACKPORT_VECTORCALL #define __Pyx_CyFunction_func_vectorcall(f) (((__pyx_CyFunctionObject*)f)->func_vectorcall) #else #define __Pyx_CyFunction_func_vectorcall(f) (((PyCFunctionObject*)f)->vectorcall) #endif #endif /* CythonFunction.proto */ static PyObject *__Pyx_CyFunction_New(PyMethodDef *ml, int flags, PyObject* qualname, PyObject *closure, PyObject *module, PyObject *globals, PyObject* code); /* CLineInTraceback.proto */ #ifdef CYTHON_CLINE_IN_TRACEBACK #define __Pyx_CLineForTraceback(tstate, c_line) (((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0) #else static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line); #endif /* CodeObjectCache.proto */ #if !CYTHON_COMPILING_IN_LIMITED_API typedef struct { PyCodeObject* code_object; int code_line; } __Pyx_CodeObjectCacheEntry; struct __Pyx_CodeObjectCache { int count; int max_count; __Pyx_CodeObjectCacheEntry* entries; }; static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL}; static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line); static PyCodeObject *__pyx_find_code_object(int code_line); static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object); #endif /* AddTraceback.proto */ static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename); /* GCCDiagnostics.proto */ #if !defined(__INTEL_COMPILER) && defined(__GNUC__) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 6)) #define __Pyx_HAS_GCC_DIAGNOSTIC #endif /* ArrayAPI.proto */ #ifndef _ARRAYARRAY_H #define _ARRAYARRAY_H typedef struct arraydescr { int typecode; int itemsize; PyObject * (*getitem)(struct arrayobject *, Py_ssize_t); int (*setitem)(struct arrayobject *, Py_ssize_t, PyObject *); #if PY_MAJOR_VERSION >= 3 char *formats; #endif } arraydescr; struct arrayobject { PyObject_HEAD Py_ssize_t ob_size; union { char *ob_item; float *as_floats; double *as_doubles; int *as_ints; unsigned int *as_uints; unsigned char *as_uchars; signed char *as_schars; char *as_chars; unsigned long *as_ulongs; long *as_longs; #if PY_MAJOR_VERSION >= 3 unsigned long long *as_ulonglongs; long long *as_longlongs; #endif short *as_shorts; unsigned short *as_ushorts; Py_UNICODE *as_pyunicodes; void *as_voidptr; } data; Py_ssize_t allocated; struct arraydescr *ob_descr; PyObject *weakreflist; #if PY_MAJOR_VERSION >= 3 int ob_exports; #endif }; #ifndef NO_NEWARRAY_INLINE static CYTHON_INLINE PyObject * newarrayobject(PyTypeObject *type, Py_ssize_t size, struct arraydescr *descr) { arrayobject *op; size_t nbytes; if (size < 0) { PyErr_BadInternalCall(); return NULL; } nbytes = size * descr->itemsize; if (nbytes / descr->itemsize != (size_t)size) { return PyErr_NoMemory(); } op = (arrayobject *) type->tp_alloc(type, 0); if (op == NULL) { return NULL; } op->ob_descr = descr; op->allocated = size; op->weakreflist = NULL; __Pyx_SET_SIZE(op, size); if (size <= 0) { op->data.ob_item = NULL; } else { op->data.ob_item = PyMem_NEW(char, nbytes); if (op->data.ob_item == NULL) { Py_DECREF(op); return PyErr_NoMemory(); } } return (PyObject *) op; } #else PyObject* newarrayobject(PyTypeObject *type, Py_ssize_t size, struct arraydescr *descr); #endif static CYTHON_INLINE int resize(arrayobject *self, Py_ssize_t n) { void *items = (void*) self->data.ob_item; PyMem_Resize(items, char, (size_t)(n * self->ob_descr->itemsize)); if (items == NULL) { PyErr_NoMemory(); return -1; } self->data.ob_item = (char*) items; __Pyx_SET_SIZE(self, n); self->allocated = n; return 0; } static CYTHON_INLINE int resize_smart(arrayobject *self, Py_ssize_t n) { void *items = (void*) self->data.ob_item; Py_ssize_t newsize; if (n < self->allocated && n*4 > self->allocated) { __Pyx_SET_SIZE(self, n); return 0; } newsize = n + (n / 2) + 1; if (newsize <= n) { PyErr_NoMemory(); return -1; } PyMem_Resize(items, char, (size_t)(newsize * self->ob_descr->itemsize)); if (items == NULL) { PyErr_NoMemory(); return -1; } self->data.ob_item = (char*) items; __Pyx_SET_SIZE(self, n); self->allocated = newsize; return 0; } #endif /* CIntToPy.proto */ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value); /* CIntFromPy.proto */ static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); /* CIntToPy.proto */ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int32_t(int32_t value); /* CIntFromPy.proto */ static CYTHON_INLINE int32_t __Pyx_PyInt_As_int32_t(PyObject *); /* CIntFromPy.proto */ static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); /* CIntToPy.proto */ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); /* CIntToPy.proto */ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int8_t(int8_t value); /* CIntToPy.proto */ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int16_t(int16_t value); /* CIntFromPy.proto */ static CYTHON_INLINE int8_t __Pyx_PyInt_As_int8_t(PyObject *); /* CIntFromPy.proto */ static CYTHON_INLINE int16_t __Pyx_PyInt_As_int16_t(PyObject *); /* CIntToPy.proto */ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_uint32_t(uint32_t value); /* CIntFromPy.proto */ static CYTHON_INLINE uint32_t __Pyx_PyInt_As_uint32_t(PyObject *); /* CIntToPy.proto */ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_uint8_t(uint8_t value); /* CIntFromPy.proto */ static CYTHON_INLINE int64_t __Pyx_PyInt_As_int64_t(PyObject *); /* CIntToPy.proto */ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int64_t(int64_t value); /* FormatTypeName.proto */ #if CYTHON_COMPILING_IN_LIMITED_API typedef PyObject *__Pyx_TypeName; #define __Pyx_FMT_TYPENAME "%U" static __Pyx_TypeName __Pyx_PyType_GetName(PyTypeObject* tp); #define __Pyx_DECREF_TypeName(obj) Py_XDECREF(obj) #else typedef const char *__Pyx_TypeName; #define __Pyx_FMT_TYPENAME "%.200s" #define __Pyx_PyType_GetName(tp) ((tp)->tp_name) #define __Pyx_DECREF_TypeName(obj) #endif /* FastTypeChecks.proto */ #if CYTHON_COMPILING_IN_CPYTHON #define __Pyx_TypeCheck(obj, type) __Pyx_IsSubtype(Py_TYPE(obj), (PyTypeObject *)type) #define __Pyx_TypeCheck2(obj, type1, type2) __Pyx_IsAnySubtype2(Py_TYPE(obj), (PyTypeObject *)type1, (PyTypeObject *)type2) static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b); static CYTHON_INLINE int __Pyx_IsAnySubtype2(PyTypeObject *cls, PyTypeObject *a, PyTypeObject *b); static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject *type); static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *type1, PyObject *type2); #else #define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) #define __Pyx_TypeCheck2(obj, type1, type2) (PyObject_TypeCheck(obj, (PyTypeObject *)type1) || PyObject_TypeCheck(obj, (PyTypeObject *)type2)) #define __Pyx_PyErr_GivenExceptionMatches(err, type) PyErr_GivenExceptionMatches(err, type) #define __Pyx_PyErr_GivenExceptionMatches2(err, type1, type2) (PyErr_GivenExceptionMatches(err, type1) || PyErr_GivenExceptionMatches(err, type2)) #endif #define __Pyx_PyErr_ExceptionMatches2(err1, err2) __Pyx_PyErr_GivenExceptionMatches2(__Pyx_PyErr_CurrentExceptionType(), err1, err2) #define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception) /* CoroutineBase.proto */ struct __pyx_CoroutineObject; typedef PyObject *(*__pyx_coroutine_body_t)(struct __pyx_CoroutineObject *, PyThreadState *, PyObject *); #if CYTHON_USE_EXC_INFO_STACK #define __Pyx_ExcInfoStruct _PyErr_StackItem #else typedef struct { PyObject *exc_type; PyObject *exc_value; PyObject *exc_traceback; } __Pyx_ExcInfoStruct; #endif typedef struct __pyx_CoroutineObject { PyObject_HEAD __pyx_coroutine_body_t body; PyObject *closure; __Pyx_ExcInfoStruct gi_exc_state; PyObject *gi_weakreflist; PyObject *classobj; PyObject *yieldfrom; PyObject *gi_name; PyObject *gi_qualname; PyObject *gi_modulename; PyObject *gi_code; PyObject *gi_frame; int resume_label; char is_running; } __pyx_CoroutineObject; static __pyx_CoroutineObject *__Pyx__Coroutine_New( PyTypeObject *type, __pyx_coroutine_body_t body, PyObject *code, PyObject *closure, PyObject *name, PyObject *qualname, PyObject *module_name); static __pyx_CoroutineObject *__Pyx__Coroutine_NewInit( __pyx_CoroutineObject *gen, __pyx_coroutine_body_t body, PyObject *code, PyObject *closure, PyObject *name, PyObject *qualname, PyObject *module_name); static CYTHON_INLINE void __Pyx_Coroutine_ExceptionClear(__Pyx_ExcInfoStruct *self); static int __Pyx_Coroutine_clear(PyObject *self); static PyObject *__Pyx_Coroutine_Send(PyObject *self, PyObject *value); static PyObject *__Pyx_Coroutine_Close(PyObject *self); static PyObject *__Pyx_Coroutine_Throw(PyObject *gen, PyObject *args); #if CYTHON_USE_EXC_INFO_STACK #define __Pyx_Coroutine_SwapException(self) #define __Pyx_Coroutine_ResetAndClearException(self) __Pyx_Coroutine_ExceptionClear(&(self)->gi_exc_state) #else #define __Pyx_Coroutine_SwapException(self) {\ __Pyx_ExceptionSwap(&(self)->gi_exc_state.exc_type, &(self)->gi_exc_state.exc_value, &(self)->gi_exc_state.exc_traceback);\ __Pyx_Coroutine_ResetFrameBackpointer(&(self)->gi_exc_state);\ } #define __Pyx_Coroutine_ResetAndClearException(self) {\ __Pyx_ExceptionReset((self)->gi_exc_state.exc_type, (self)->gi_exc_state.exc_value, (self)->gi_exc_state.exc_traceback);\ (self)->gi_exc_state.exc_type = (self)->gi_exc_state.exc_value = (self)->gi_exc_state.exc_traceback = NULL;\ } #endif #if CYTHON_FAST_THREAD_STATE #define __Pyx_PyGen_FetchStopIterationValue(pvalue)\ __Pyx_PyGen__FetchStopIterationValue(__pyx_tstate, pvalue) #else #define __Pyx_PyGen_FetchStopIterationValue(pvalue)\ __Pyx_PyGen__FetchStopIterationValue(__Pyx_PyThreadState_Current, pvalue) #endif static int __Pyx_PyGen__FetchStopIterationValue(PyThreadState *tstate, PyObject **pvalue); static CYTHON_INLINE void __Pyx_Coroutine_ResetFrameBackpointer(__Pyx_ExcInfoStruct *exc_state); /* PatchModuleWithCoroutine.proto */ static PyObject* __Pyx_Coroutine_patch_module(PyObject* module, const char* py_code); /* PatchGeneratorABC.proto */ static int __Pyx_patch_abc(void); /* Generator.proto */ #define __Pyx_Generator_USED #define __Pyx_Generator_CheckExact(obj) __Pyx_IS_TYPE(obj, __pyx_GeneratorType) #define __Pyx_Generator_New(body, code, closure, name, qualname, module_name)\ __Pyx__Coroutine_New(__pyx_GeneratorType, body, code, closure, name, qualname, module_name) static PyObject *__Pyx_Generator_Next(PyObject *self); static int __pyx_Generator_init(PyObject *module); /* CheckBinaryVersion.proto */ static unsigned long __Pyx_get_runtime_version(void); static int __Pyx_check_binary_version(unsigned long ct_version, unsigned long rt_version, int allow_newer); /* FunctionImport.proto */ static int __Pyx_ImportFunction_3_0_11(PyObject *module, const char *funcname, void (**f)(void), const char *sig); /* InitStrings.proto */ static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); /* #### Code section: module_declarations ### */ static CYTHON_INLINE double __pyx_f_7cpython_7complex_7complex_4real_real(PyComplexObject *__pyx_v_self); /* proto*/ static CYTHON_INLINE double __pyx_f_7cpython_7complex_7complex_4imag_imag(PyComplexObject *__pyx_v_self); /* proto*/ static PyObject *__pyx_f_5pysam_7libcbcf_13VariantHeader__subset_samples(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self, PyObject *__pyx_v_include_samples); /* proto*/ static PyObject *__pyx_f_5pysam_7libcbcf_13VariantHeader__add_sample(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self, PyObject *__pyx_v_name); /* proto*/ static PyObject *__pyx_f_5pysam_7libcbcf_13VariantHeader__hdr_sync(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self); /* proto*/ static int __pyx_f_5pysam_7libcbcf_11VariantFile_write(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self, struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_record, int __pyx_skip_dispatch); /* proto*/ /* Module declarations from "libc.stdint" */ /* Module declarations from "libc.string" */ /* Module declarations from "libc.stdlib" */ /* Module declarations from "libc.stdio" */ /* Module declarations from "posix.types" */ /* Module declarations from "pysam.libchtslib" */ /* Module declarations from "libc.errno" */ /* Module declarations from "cython" */ /* Module declarations from "__builtin__" */ /* Module declarations from "cpython.type" */ /* Module declarations from "cpython.version" */ /* Module declarations from "cpython.ref" */ /* Module declarations from "cpython.exc" */ /* Module declarations from "cpython.module" */ /* Module declarations from "cpython.mem" */ /* Module declarations from "cpython.tuple" */ /* Module declarations from "cpython.list" */ /* Module declarations from "cpython.sequence" */ /* Module declarations from "cpython.mapping" */ /* Module declarations from "cpython.iterator" */ /* Module declarations from "cpython.number" */ /* Module declarations from "cpython.int" */ /* Module declarations from "__builtin__" */ /* Module declarations from "cpython.bool" */ /* Module declarations from "cpython.long" */ /* Module declarations from "cpython.float" */ /* Module declarations from "__builtin__" */ /* Module declarations from "cpython.complex" */ /* Module declarations from "cpython.string" */ /* Module declarations from "libc.stddef" */ /* Module declarations from "cpython.unicode" */ /* Module declarations from "cpython.pyport" */ /* Module declarations from "cpython.dict" */ /* Module declarations from "cpython.instance" */ /* Module declarations from "cpython.function" */ /* Module declarations from "cpython.method" */ /* Module declarations from "cpython.weakref" */ /* Module declarations from "cpython.getargs" */ /* Module declarations from "cpython.pythread" */ /* Module declarations from "cpython.pystate" */ /* Module declarations from "cpython.cobject" */ /* Module declarations from "cpython.oldbuffer" */ /* Module declarations from "cpython.set" */ /* Module declarations from "cpython.buffer" */ /* Module declarations from "cpython.bytes" */ /* Module declarations from "cpython.pycapsule" */ /* Module declarations from "cpython.contextvars" */ /* Module declarations from "cpython" */ /* Module declarations from "cpython.object" */ /* Module declarations from "array" */ /* Module declarations from "cpython.array" */ static CYTHON_INLINE int __pyx_f_7cpython_5array_extend_buffer(arrayobject *, char *, Py_ssize_t); /*proto*/ /* Module declarations from "pysam.libcutils" */ static PyObject *(*__pyx_f_5pysam_9libcutils_charptr_to_str)(char const *, struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str *__pyx_optional_args); /*proto*/ static PyObject *(*__pyx_f_5pysam_9libcutils_charptr_to_str_w_len)(char const *, size_t, struct __pyx_opt_args_5pysam_9libcutils_charptr_to_str_w_len *__pyx_optional_args); /*proto*/ static PyObject *(*__pyx_f_5pysam_9libcutils_force_str)(PyObject *, struct __pyx_opt_args_5pysam_9libcutils_force_str *__pyx_optional_args); /*proto*/ static PyObject *(*__pyx_f_5pysam_9libcutils_force_bytes)(PyObject *, struct __pyx_opt_args_5pysam_9libcutils_force_bytes *__pyx_optional_args); /*proto*/ static PyObject *(*__pyx_f_5pysam_9libcutils_decode_bytes)(PyObject *, struct __pyx_opt_args_5pysam_9libcutils_decode_bytes *__pyx_optional_args); /*proto*/ static PyObject *(*__pyx_f_5pysam_9libcutils_encode_filename)(PyObject *); /*proto*/ static PyObject *(*__pyx_f_5pysam_9libcutils_from_string_and_size)(char const *, size_t); /*proto*/ /* Module declarations from "pysam.libcbcf" */ static int __pyx_v_5pysam_7libcbcf_MAX_POS; static PyObject *__pyx_v_5pysam_7libcbcf_VALUE_TYPES = 0; static PyObject *__pyx_v_5pysam_7libcbcf_METADATA_TYPES = 0; static PyObject *__pyx_v_5pysam_7libcbcf_METADATA_LENGTHS = 0; static PyObject *__pyx_v_5pysam_7libcbcf__nothing = 0; static PyObject *__pyx_v_5pysam_7libcbcf_bcf_str_cache = 0; static CYTHON_INLINE PyObject *__pyx_f_5pysam_7libcbcf_bcf_str_cache_get_charptr(char const *); /*proto*/ static int __pyx_f_5pysam_7libcbcf_comb(int, int); /*proto*/ static CYTHON_INLINE int __pyx_f_5pysam_7libcbcf_bcf_geno_combinations(int, int); /*proto*/ static CYTHON_INLINE int __pyx_f_5pysam_7libcbcf_check_header_id(bcf_hdr_t *, int, int); /*proto*/ static CYTHON_INLINE int __pyx_f_5pysam_7libcbcf_is_gt_fmt(bcf_hdr_t *, int); /*proto*/ static CYTHON_INLINE int __pyx_f_5pysam_7libcbcf_bcf_genotype_count(bcf_hdr_t *, bcf1_t *, int); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf_char_array_to_tuple(char const **, Py_ssize_t, struct __pyx_opt_args_5pysam_7libcbcf_char_array_to_tuple *__pyx_optional_args); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf_bcf_array_to_object(void *, int, Py_ssize_t, Py_ssize_t, int); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf_bcf_object_to_array(PyObject *, void *, int, Py_ssize_t, int); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf_bcf_empty_array(int, Py_ssize_t, int); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf_bcf_copy_expand_array(void *, int, size_t, void *, int, size_t, int); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf_bcf_get_value_count(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *, int, int, Py_ssize_t *, int *, int); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf_bcf_info_get_value(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *, bcf_info_t const *); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf_bcf_check_values(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *, PyObject *, int, int, int, int, int, Py_ssize_t, Py_ssize_t *, int *, int *); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf_bcf_encode_alleles(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *, PyObject *); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf_bcf_info_set_value(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *, PyObject *, PyObject *); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf_bcf_format_get_value(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *, PyObject *); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf_bcf_format_set_value(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *, PyObject *, PyObject *); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf_bcf_format_del_value(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *, PyObject *); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf_bcf_format_get_allele_indices(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf_bcf_format_get_alleles(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *); /*proto*/ static int __pyx_f_5pysam_7libcbcf_bcf_sample_get_phased(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf_bcf_sample_set_phased(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *, int); /*proto*/ static CYTHON_INLINE PyObject *__pyx_f_5pysam_7libcbcf_bcf_sync_end(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *); /*proto*/ static CYTHON_INLINE int __pyx_f_5pysam_7libcbcf_has_symbolic_allele(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *); /*proto*/ static struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_f_5pysam_7libcbcf_makeVariantHeaderRecord(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *, bcf_hrec_t *); /*proto*/ static struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords *__pyx_f_5pysam_7libcbcf_makeVariantHeaderRecords(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *); /*proto*/ static struct __pyx_obj_5pysam_7libcbcf_VariantMetadata *__pyx_f_5pysam_7libcbcf_makeVariantMetadata(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *, int, int); /*proto*/ static struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_f_5pysam_7libcbcf_makeVariantHeaderMetadata(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *, int32_t); /*proto*/ static struct __pyx_obj_5pysam_7libcbcf_VariantContig *__pyx_f_5pysam_7libcbcf_makeVariantContig(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *, int); /*proto*/ static struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_f_5pysam_7libcbcf_makeVariantHeaderContigs(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *); /*proto*/ static struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples *__pyx_f_5pysam_7libcbcf_makeVariantHeaderSamples(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *); /*proto*/ static struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_f_5pysam_7libcbcf_makeVariantHeader(bcf_hdr_t *); /*proto*/ static CYTHON_INLINE int __pyx_f_5pysam_7libcbcf_bcf_header_get_info_id(bcf_hdr_t *, PyObject *); /*proto*/ static struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_f_5pysam_7libcbcf_makeVariantRecordFilter(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *); /*proto*/ static struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *__pyx_f_5pysam_7libcbcf_makeVariantRecordFormat(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *); /*proto*/ static struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_f_5pysam_7libcbcf_makeVariantRecordInfo(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *); /*proto*/ static struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_f_5pysam_7libcbcf_makeVariantRecordSamples(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *); /*proto*/ static struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_f_5pysam_7libcbcf_makeVariantRecord(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *, bcf1_t *); /*proto*/ static struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_f_5pysam_7libcbcf_makeVariantRecordSample(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *, int32_t); /*proto*/ static struct __pyx_obj_5pysam_7libcbcf_BCFIndex *__pyx_f_5pysam_7libcbcf_makeBCFIndex(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *, hts_idx_t *); /*proto*/ static struct __pyx_obj_5pysam_7libcbcf_TabixIndex *__pyx_f_5pysam_7libcbcf_makeTabixIndex(tbx_t *); /*proto*/ static void __pyx_f_5pysam_7libcbcf__stop_BCFIterator(struct __pyx_obj_5pysam_7libcbcf_BCFIterator *, bcf1_t *); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf___pyx_unpickle_VariantHeaderRecords__set_state(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords *, PyObject *); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf___pyx_unpickle_VariantMetadata__set_state(struct __pyx_obj_5pysam_7libcbcf_VariantMetadata *, PyObject *); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf___pyx_unpickle_VariantHeaderMetadata__set_state(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *, PyObject *); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf___pyx_unpickle_VariantContig__set_state(struct __pyx_obj_5pysam_7libcbcf_VariantContig *, PyObject *); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf___pyx_unpickle_VariantHeaderContigs__set_state(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *, PyObject *); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf___pyx_unpickle_VariantHeaderSamples__set_state(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples *, PyObject *); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf___pyx_unpickle_VariantRecordFilter__set_state(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *, PyObject *); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf___pyx_unpickle_VariantRecordFormat__set_state(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *, PyObject *); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf___pyx_unpickle_VariantRecordInfo__set_state(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *, PyObject *); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf___pyx_unpickle_VariantRecordSamples__set_state(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *, PyObject *); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf___pyx_unpickle_VariantRecordSample__set_state(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *, PyObject *); /*proto*/ static PyObject *__pyx_f_5pysam_7libcbcf___pyx_unpickle_BaseIndex__set_state(struct __pyx_obj_5pysam_7libcbcf_BaseIndex *, PyObject *); /*proto*/ /* #### Code section: typeinfo ### */ /* #### Code section: before_global_var ### */ #define __Pyx_MODULE_NAME "pysam.libcbcf" extern int __pyx_module_is_main_pysam__libcbcf; int __pyx_module_is_main_pysam__libcbcf = 0; /* Implementation of "pysam.libcbcf" */ /* #### Code section: global_var ### */ static PyObject *__pyx_builtin_object; static PyObject *__pyx_builtin_range; static PyObject *__pyx_builtin_ValueError; static PyObject *__pyx_builtin_AssertionError; static PyObject *__pyx_builtin_TypeError; static PyObject *__pyx_builtin_chr; static PyObject *__pyx_builtin_KeyError; static PyObject *__pyx_builtin_IndexError; static PyObject *__pyx_builtin_MemoryError; static PyObject *__pyx_builtin_enumerate; static PyObject *__pyx_builtin_NotImplemented; static PyObject *__pyx_builtin_reversed; static PyObject *__pyx_builtin_IOError; static PyObject *__pyx_builtin_StopIteration; /* #### Code section: string_decls ### */ static const char __pyx_k_A[] = "A"; static const char __pyx_k_G[] = "G"; static const char __pyx_k_R[] = "R"; static const char __pyx_k_d[] = "d"; static const char __pyx_k_f[] = "f"; static const char __pyx_k_i[] = "i"; static const char __pyx_k_k[] = "k"; static const char __pyx_k_m[] = "m"; static const char __pyx_k_n[] = "n"; static const char __pyx_k_r[] = "r"; static const char __pyx_k_v[] = "v"; static const char __pyx_k_w[] = "w"; static const char __pyx_k_GT[] = "GT"; static const char __pyx_k_ID[] = "ID"; static const char __pyx_k__2[] = ","; static const char __pyx_k_gc[] = "gc"; static const char __pyx_k_gz[] = ".gz"; static const char __pyx_k_id[] = "id"; static const char __pyx_k_os[] = "os"; static const char __pyx_k_wb[] = "wb"; static const char __pyx_k_wz[] = "wz"; static const char __pyx_k_ALT[] = "ALT"; static const char __pyx_k_BND[] = "BND"; static const char __pyx_k_END[] = "END"; static const char __pyx_k_MNP[] = "MNP"; static const char __pyx_k_REF[] = "REF"; static const char __pyx_k_SNP[] = "SNP"; static const char __pyx_k__12[] = ""; static const char __pyx_k__52[] = "."; static const char __pyx_k__53[] = "\""; static const char __pyx_k_add[] = "add"; static const char __pyx_k_all[] = "__all__"; static const char __pyx_k_arg[] = "arg"; static const char __pyx_k_bcf[] = "bcf"; static const char __pyx_k_chr[] = "chr"; static const char __pyx_k_end[] = "end"; static const char __pyx_k_fmt[] = "fmt"; static const char __pyx_k_get[] = "get"; static const char __pyx_k_hdr[] = "hdr"; static const char __pyx_k_idx[] = "idx"; static const char __pyx_k_key[] = "key"; static const char __pyx_k_msg[] = "msg"; static const char __pyx_k_new[] = "__new__"; static const char __pyx_k_pop[] = "pop"; static const char __pyx_k_rec[] = "rec"; static const char __pyx_k_ref[] = "ref"; static const char __pyx_k_ret[] = "ret"; static const char __pyx_k_rid[] = "rid"; static const char __pyx_k_rwa[] = "rwa"; static const char __pyx_k_sys[] = "sys"; static const char __pyx_k_tid[] = "tid"; static const char __pyx_k_wb0[] = "wb0"; static const char __pyx_k_wbu[] = "wbu"; static const char __pyx_k_Flag[] = "Flag"; static const char __pyx_k_INFO[] = "INFO"; static const char __pyx_k_PASS[] = "PASS"; static const char __pyx_k_Type[] = "Type"; static const char __pyx_k__181[] = ", "; static const char __pyx_k__241[] = "-"; static const char __pyx_k__278[] = "*"; static const char __pyx_k__323[] = "_"; static const char __pyx_k__330[] = "?"; static const char __pyx_k_args[] = "args"; static const char __pyx_k_bkey[] = "bkey"; static const char __pyx_k_ckey[] = "ckey"; static const char __pyx_k_copy[] = "copy"; static const char __pyx_k_dict[] = "__dict__"; static const char __pyx_k_hash[] = "__hash__"; static const char __pyx_k_hrec[] = "hrec"; static const char __pyx_k_info[] = "info"; static const char __pyx_k_init[] = "__init__"; static const char __pyx_k_iter[] = "__iter__"; static const char __pyx_k_join[] = "join"; static const char __pyx_k_keys[] = "keys"; static const char __pyx_k_line[] = "line"; static const char __pyx_k_main[] = "__main__"; static const char __pyx_k_mode[] = "mode"; static const char __pyx_k_name[] = "name"; static const char __pyx_k_open[] = "open"; static const char __pyx_k_qual[] = "qual"; static const char __pyx_k_seek[] = "seek"; static const char __pyx_k_self[] = "self"; static const char __pyx_k_send[] = "send"; static const char __pyx_k_spec[] = "__spec__"; static const char __pyx_k_stop[] = "stop"; static const char __pyx_k_tell[] = "tell"; static const char __pyx_k_test[] = "__test__"; static const char __pyx_k_tidx[] = "tidx"; static const char __pyx_k_type[] = "type"; static const char __pyx_k_vars[] = "vars"; static const char __pyx_k_FIXED[] = "FIXED"; static const char __pyx_k_Float[] = "Float"; static const char __pyx_k_INDEL[] = "INDEL"; static const char __pyx_k_OTHER[] = "OTHER"; static const char __pyx_k_bcf_2[] = ".bcf"; static const char __pyx_k_bcguz[] = "bcguz"; static const char __pyx_k_bgzfp[] = "bgzfp"; static const char __pyx_k_bline[] = "bline"; static const char __pyx_k_clear[] = "clear"; static const char __pyx_k_close[] = "close"; static const char __pyx_k_cmode[] = "cmode"; static const char __pyx_k_fetch[] = "fetch"; static const char __pyx_k_index[] = "index"; static const char __pyx_k_items[] = "items"; static const char __pyx_k_merge[] = "merge"; static const char __pyx_k_range[] = "range"; static const char __pyx_k_remap[] = "remap"; static const char __pyx_k_reset[] = "reset"; static const char __pyx_k_split[] = "split"; static const char __pyx_k_start[] = "start"; static const char __pyx_k_state[] = "state"; static const char __pyx_k_strip[] = "strip"; static const char __pyx_k_throw[] = "throw"; static const char __pyx_k_upper[] = "upper"; static const char __pyx_k_utf_8[] = "utf-8"; static const char __pyx_k_value[] = "value"; static const char __pyx_k_write[] = "write"; static const char __pyx_k_CONTIG[] = "CONTIG"; static const char __pyx_k_FILTER[] = "FILTER"; static const char __pyx_k_FORMAT[] = "FORMAT"; static const char __pyx_k_Number[] = "Number"; static const char __pyx_k_String[] = "String"; static const char __pyx_k_append[] = "append"; static const char __pyx_k_contig[] = "contig"; static const char __pyx_k_dict_2[] = "_dict"; static const char __pyx_k_enable[] = "enable"; static const char __pyx_k_filter[] = "filter"; static const char __pyx_k_format[] = "format"; static const char __pyx_k_header[] = "header"; static const char __pyx_k_import[] = "__import__"; static const char __pyx_k_kwargs[] = "kwargs"; static const char __pyx_k_length[] = "length"; static const char __pyx_k_name_2[] = "__name__"; static const char __pyx_k_number[] = "number"; static const char __pyx_k_object[] = "object"; static const char __pyx_k_phased[] = "phased"; static const char __pyx_k_pickle[] = "pickle"; static const char __pyx_k_quoted[] = "quoted"; static const char __pyx_k_record[] = "record"; static const char __pyx_k_reduce[] = "__reduce__"; static const char __pyx_k_region[] = "region"; static const char __pyx_k_remove[] = "remove"; static const char __pyx_k_reopen[] = "reopen"; static const char __pyx_k_sample[] = "sample"; static const char __pyx_k_update[] = "update"; static const char __pyx_k_values[] = "values"; static const char __pyx_k_GENERIC[] = "GENERIC"; static const char __pyx_k_IOError[] = "IOError"; static const char __pyx_k_Integer[] = "Integer"; static const char __pyx_k_NON_REF[] = "<NON_REF>"; static const char __pyx_k_OVERLAP[] = "OVERLAP"; static const char __pyx_k_alleles[] = "alleles"; static const char __pyx_k_default[] = "default"; static const char __pyx_k_disable[] = "disable"; static const char __pyx_k_dst_hdr[] = "dst_hdr"; static const char __pyx_k_genexpr[] = "genexpr"; static const char __pyx_k_get_tid[] = "get_tid"; static const char __pyx_k_info_id[] = "info_id"; static const char __pyx_k_is_open[] = "is_open"; static const char __pyx_k_records[] = "records"; static const char __pyx_k_samples[] = "samples"; static const char __pyx_k_src_hdr[] = "src_hdr"; static const char __pyx_k_threads[] = "threads"; static const char __pyx_k_BCFIndex[] = "BCFIndex"; static const char __pyx_k_KeyError[] = "KeyError"; static const char __pyx_k_VARIABLE[] = "VARIABLE"; static const char __pyx_k_add_line[] = "add_line"; static const char __pyx_k_add_meta[] = "add_meta"; static const char __pyx_k_endswith[] = "endswith"; static const char __pyx_k_filename[] = "filename"; static const char __pyx_k_getstate[] = "__getstate__"; static const char __pyx_k_iterkeys[] = "iterkeys"; static const char __pyx_k_pyx_type[] = "__pyx_type"; static const char __pyx_k_reversed[] = "reversed"; static const char __pyx_k_setstate[] = "__setstate__"; static const char __pyx_k_BaseIndex[] = "BaseIndex"; static const char __pyx_k_TypeError[] = "TypeError"; static const char __pyx_k_cfilename[] = "cfilename"; static const char __pyx_k_enumerate[] = "enumerate"; static const char __pyx_k_isenabled[] = "isenabled"; static const char __pyx_k_iteritems[] = "iteritems"; static const char __pyx_k_pyx_state[] = "__pyx_state"; static const char __pyx_k_reduce_ex[] = "__reduce_ex__"; static const char __pyx_k_reference[] = "reference"; static const char __pyx_k_translate[] = "translate"; static const char __pyx_k_IndexError[] = "IndexError"; static const char __pyx_k_STRUCTURED[] = "STRUCTURED"; static const char __pyx_k_TabixIndex[] = "TabixIndex"; static const char __pyx_k_ValueError[] = "ValueError"; static const char __pyx_k_add_record[] = "add_record"; static const char __pyx_k_add_sample[] = "add_sample"; static const char __pyx_k_dst_header[] = "dst_header"; static const char __pyx_k_itervalues[] = "itervalues"; static const char __pyx_k_new_record[] = "new_record"; static const char __pyx_k_pyx_result[] = "__pyx_result"; static const char __pyx_k_pyx_vtable[] = "__pyx_vtable__"; static const char __pyx_k_startswith[] = "startswith"; static const char __pyx_k_BCFIterator[] = "BCFIterator"; static const char __pyx_k_Description[] = "Description"; static const char __pyx_k_Invalid_tid[] = "Invalid tid"; static const char __pyx_k_MemoryError[] = "MemoryError"; static const char __pyx_k_PickleError[] = "PickleError"; static const char __pyx_k_VariantFile[] = "VariantFile"; static const char __pyx_k_add_samples[] = "add_samples"; static const char __pyx_k_description[] = "description"; static const char __pyx_k_invalid_key[] = "invalid key: {}"; static const char __pyx_k_invalid_tag[] = "invalid tag"; static const char __pyx_k_pysam_utils[] = "pysam.utils"; static const char __pyx_k_BaseIterator[] = "BaseIterator"; static const char __pyx_k_clear_header[] = "clear_header"; static const char __pyx_k_drop_samples[] = "drop_samples"; static const char __pyx_k_format_modes[] = "format_modes"; static const char __pyx_k_initializing[] = "_initializing"; static const char __pyx_k_is_coroutine[] = "_is_coroutine"; static const char __pyx_k_is_valid_tid[] = "is_valid_tid"; static const char __pyx_k_parse_region[] = "parse_region"; static const char __pyx_k_pyx_checksum[] = "__pyx_checksum"; static const char __pyx_k_stringsource[] = "<stringsource>"; static const char __pyx_k_unknown_INFO[] = "unknown INFO: {}"; static const char __pyx_k_unknown_mode[] = "unknown mode {}"; static const char __pyx_k_unquoted_str[] = "unquoted_str"; static const char __pyx_k_use_setstate[] = "use_setstate"; static const char __pyx_k_BaseIndex_get[] = "BaseIndex.get"; static const char __pyx_k_BaseIndex_pop[] = "BaseIndex.pop"; static const char __pyx_k_StopIteration[] = "StopIteration"; static const char __pyx_k_TabixIterator[] = "TabixIterator"; static const char __pyx_k_VariantContig[] = "VariantContig"; static const char __pyx_k_VariantHeader[] = "VariantHeader"; static const char __pyx_k_VariantRecord[] = "VariantRecord"; static const char __pyx_k_class_getitem[] = "__class_getitem__"; static const char __pyx_k_invalid_modes[] = "invalid_modes"; static const char __pyx_k_pysam_libcbcf[] = "pysam.libcbcf"; static const char __pyx_k_reduce_cython[] = "__reduce_cython__"; static const char __pyx_k_remove_header[] = "remove_header"; static const char __pyx_k_AssertionError[] = "AssertionError"; static const char __pyx_k_BCFIndex_fetch[] = "BCFIndex.fetch"; static const char __pyx_k_BaseIndex_keys[] = "BaseIndex.keys"; static const char __pyx_k_Invalid_filter[] = "Invalid filter: {}"; static const char __pyx_k_Invalid_header[] = "Invalid header"; static const char __pyx_k_NotImplemented[] = "NotImplemented"; static const char __pyx_k_Unknown_allele[] = "Unknown allele"; static const char __pyx_k_index_filename[] = "index_filename"; static const char __pyx_k_invalid_FORMAT[] = "invalid FORMAT: {}"; static const char __pyx_k_invalid_contig[] = "invalid contig: {}"; static const char __pyx_k_subset_samples[] = "subset_samples"; static const char __pyx_k_truncated_file[] = "truncated file"; static const char __pyx_k_unknown_format[] = "unknown format: {}"; static const char __pyx_k_BaseIndex_items[] = "BaseIndex.items"; static const char __pyx_k_VariantMetadata[] = "VariantMetadata"; static const char __pyx_k_cindex_filename[] = "cindex_filename"; static const char __pyx_k_include_samples[] = "include_samples"; static const char __pyx_k_limits_violated[] = "limits violated"; static const char __pyx_k_pyx_PickleError[] = "__pyx_PickleError"; static const char __pyx_k_setstate_cython[] = "__setstate_cython__"; static const char __pyx_k_unable_to_fetch[] = "unable to fetch {}:{}-{}"; static const char __pyx_k_BaseIndex_update[] = "BaseIndex.update"; static const char __pyx_k_BaseIndex_values[] = "BaseIndex.values"; static const char __pyx_k_TabixIndex_fetch[] = "TabixIndex.fetch"; static const char __pyx_k_VariantFile_copy[] = "VariantFile.copy"; static const char __pyx_k_VariantFile_open[] = "VariantFile.open"; static const char __pyx_k_check_truncation[] = "check_truncation"; static const char __pyx_k_invalid_contig_2[] = "invalid contig"; static const char __pyx_k_unsupported_type[] = "unsupported type"; static const char __pyx_k_Error_updating_id[] = "Error updating id"; static const char __pyx_k_Invalid_header_id[] = "Invalid header id"; static const char __pyx_k_VariantFile_close[] = "VariantFile.close"; static const char __pyx_k_VariantFile_fetch[] = "VariantFile.fetch"; static const char __pyx_k_VariantFile_reset[] = "VariantFile.reset"; static const char __pyx_k_VariantFile_write[] = "VariantFile.write"; static const char __pyx_k_VariantRecordInfo[] = "VariantRecordInfo"; static const char __pyx_k_bcguz0123456789ex[] = "bcguz0123456789ex"; static const char __pyx_k_ignore_truncation[] = "ignore_truncation"; static const char __pyx_k_invalid_contig_id[] = "invalid contig id"; static const char __pyx_k_pysam_libcbcf_pyx[] = "pysam/libcbcf.pyx"; static const char __pyx_k_unsupported_types[] = "unsupported types"; static const char __pyx_k_vcf_format_failed[] = "vcf_format failed"; static const char __pyx_k_BaseIndex_iterkeys[] = "BaseIndex.iterkeys"; static const char __pyx_k_Invalid_INFO_field[] = "Invalid INFO field: {}"; static const char __pyx_k_Unknown_INFO_field[] = "Unknown INFO field: {}"; static const char __pyx_k_VariantHeader_copy[] = "VariantHeader.copy"; static const char __pyx_k_VariantRecord_copy[] = "VariantRecord.copy"; static const char __pyx_k_asyncio_coroutines[] = "asyncio.coroutines"; static const char __pyx_k_bcf_index_required[] = "bcf index required"; static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback"; static const char __pyx_k_error_in_vcf_parse[] = "error in vcf_parse"; static const char __pyx_k_get_reference_name[] = "get_reference_name"; static const char __pyx_k_BaseIndex_iteritems[] = "BaseIndex.iteritems"; static const char __pyx_k_Error_extracting_ID[] = "Error extracting ID"; static const char __pyx_k_VariantFile_get_tid[] = "VariantFile.get_tid"; static const char __pyx_k_VariantHeaderRecord[] = "VariantHeaderRecord"; static const char __pyx_k_VariantHeader_merge[] = "VariantHeader.merge"; static const char __pyx_k_VariantRecordFilter[] = "VariantRecordFilter"; static const char __pyx_k_VariantRecordFormat[] = "VariantRecordFormat"; static const char __pyx_k_VariantRecordSample[] = "VariantRecordSample"; static const char __pyx_k_invalid_header_line[] = "invalid header line"; static const char __pyx_k_invalid_metadata_id[] = "invalid metadata id"; static const char __pyx_k_invalid_sample_name[] = "invalid sample name: {}"; static const char __pyx_k_BaseIndex_itervalues[] = "BaseIndex.itervalues"; static const char __pyx_k_Invalid_allele_index[] = "Invalid allele index"; static const char __pyx_k_Invalid_index_object[] = "Invalid index object"; static const char __pyx_k_Unable_to_delete_END[] = "Unable to delete END"; static const char __pyx_k_VariantHeaderContigs[] = "VariantHeaderContigs"; static const char __pyx_k_VariantHeaderRecords[] = "VariantHeaderRecords"; static const char __pyx_k_VariantHeaderSamples[] = "VariantHeaderSamples"; static const char __pyx_k_VariantRecordSamples[] = "VariantRecordSamples"; static const char __pyx_k_bcf_must_not_be_None[] = "bcf must not be None"; static const char __pyx_k_duplicate_filehandle[] = "duplicate_filehandle"; static const char __pyx_k_invalid_contig_index[] = "invalid contig index"; static const char __pyx_k_invalid_filter_index[] = "invalid filter index"; static const char __pyx_k_invalid_mode_options[] = "invalid mode options: {}"; static const char __pyx_k_invalid_reference_id[] = "invalid reference id"; static const char __pyx_k_invalid_sample_index[] = "invalid sample index"; static const char __pyx_k_tabix_index_required[] = "tabix index required"; static const char __pyx_k_Unable_to_delete_INFO[] = "Unable to delete INFO"; static const char __pyx_k_Unknown_format_length[] = "Unknown format length"; static const char __pyx_k_Unsupported_INFO_type[] = "Unsupported INFO type"; static const char __pyx_k_VariantHeaderMetadata[] = "VariantHeaderMetadata"; static const char __pyx_k_VariantRecordInfo_get[] = "VariantRecordInfo.get"; static const char __pyx_k_VariantRecordInfo_pop[] = "VariantRecordInfo.pop"; static const char __pyx_k_bcf_hdr_format_failed[] = "bcf_hdr_format failed"; static const char __pyx_k_invalid_VariantHeader[] = "invalid VariantHeader"; static const char __pyx_k_invalid_VariantRecord[] = "invalid VariantRecord"; static const char __pyx_k_invalid_metadata_type[] = "invalid metadata type"; static const char __pyx_k_Cannot_re_open_htsfile[] = "Cannot re-open htsfile"; static const char __pyx_k_Duplicated_sample_name[] = "Duplicated sample name: {}"; static const char __pyx_k_Error_s_reading_record[] = "Error(s) reading record: {}"; static const char __pyx_k_Error_updating_alleles[] = "Error updating alleles"; static const char __pyx_k_VariantFile_new_record[] = "VariantFile.new_record"; static const char __pyx_k_VariantHeader_add_line[] = "VariantHeader.add_line"; static const char __pyx_k_VariantHeader_add_meta[] = "VariantHeader.add_meta"; static const char __pyx_k_VariantRecordInfo_keys[] = "VariantRecordInfo.keys"; static const char __pyx_k_cannot_set_null_allele[] = "cannot set null allele"; static const char __pyx_k_pyx_unpickle_BaseIndex[] = "__pyx_unpickle_BaseIndex"; static const char __pyx_k_unknown_type_specified[] = "unknown type specified: {}"; static const char __pyx_k_Unable_to_delete_FORMAT[] = "Unable to delete FORMAT"; static const char __pyx_k_Unsupported_FORMAT_type[] = "Unsupported FORMAT type"; static const char __pyx_k_VariantHeaderRecord_get[] = "VariantHeaderRecord.get"; static const char __pyx_k_VariantHeaderRecord_pop[] = "VariantHeaderRecord.pop"; static const char __pyx_k_VariantRecordFilter_add[] = "VariantRecordFilter.add"; static const char __pyx_k_VariantRecordFilter_get[] = "VariantRecordFilter.get"; static const char __pyx_k_VariantRecordFormat_get[] = "VariantRecordFormat.get"; static const char __pyx_k_VariantRecordInfo_clear[] = "VariantRecordInfo.clear"; static const char __pyx_k_VariantRecordInfo_items[] = "VariantRecordInfo.items"; static const char __pyx_k_VariantRecordSample_get[] = "VariantRecordSample.get"; static const char __pyx_k_VariantRecordSample_pop[] = "VariantRecordSample.pop"; static const char __pyx_k_VariantRecord_translate[] = "VariantRecord.translate"; static const char __pyx_k_fetch_requires_an_index[] = "fetch requires an index"; static const char __pyx_k_header_must_not_be_None[] = "header must not be None"; static const char __pyx_k_invalid_character_found[] = "invalid character found"; static const char __pyx_k_record_must_not_be_None[] = "record must not be None"; static const char __pyx_k_sample_must_not_be_None[] = "sample must not be None"; static const char __pyx_k_BCFIndex___reduce_cython[] = "BCFIndex.__reduce_cython__"; static const char __pyx_k_VariantFile_is_valid_tid[] = "VariantFile.is_valid_tid"; static const char __pyx_k_VariantHeaderContigs_add[] = "VariantHeaderContigs.add"; static const char __pyx_k_VariantHeaderContigs_get[] = "VariantHeaderContigs.get"; static const char __pyx_k_VariantHeaderRecord_keys[] = "VariantHeaderRecord.keys"; static const char __pyx_k_VariantHeaderSamples_add[] = "VariantHeaderSamples.add"; static const char __pyx_k_VariantHeader_add_record[] = "VariantHeader.add_record"; static const char __pyx_k_VariantHeader_add_sample[] = "VariantHeader.add_sample"; static const char __pyx_k_VariantHeader_new_record[] = "VariantHeader.new_record"; static const char __pyx_k_VariantRecordFilter_keys[] = "VariantRecordFilter.keys"; static const char __pyx_k_VariantRecordFormat_keys[] = "VariantRecordFormat.keys"; static const char __pyx_k_VariantRecordInfo___iter[] = "VariantRecordInfo.__iter__"; static const char __pyx_k_VariantRecordInfo_update[] = "VariantRecordInfo.update"; static const char __pyx_k_VariantRecordInfo_values[] = "VariantRecordInfo.values"; static const char __pyx_k_VariantRecordSample_keys[] = "VariantRecordSample.keys"; static const char __pyx_k_VariantRecordSamples_get[] = "VariantRecordSamples.get"; static const char __pyx_k_VariantRecordSamples_pop[] = "VariantRecordSamples.pop"; static const char __pyx_k_cannot_find_metadata_key[] = "cannot find metadata key"; static const char __pyx_k_contig_must_be_specified[] = "contig must be specified"; static const char __pyx_k_could_not_open_file_mode[] = "could not open file `{}` (mode='{}')"; static const char __pyx_k_BaseIndex___reduce_cython[] = "BaseIndex.__reduce_cython__"; static const char __pyx_k_Cannot_create_empty_array[] = "Cannot create empty array"; static const char __pyx_k_Invalid_chromosome_contig[] = "Invalid chromosome/contig"; static const char __pyx_k_Position_must_be_positive[] = "Position must be positive"; static const char __pyx_k_VariantHeaderContigs_keys[] = "VariantHeaderContigs.keys"; static const char __pyx_k_VariantHeaderMetadata_add[] = "VariantHeaderMetadata.add"; static const char __pyx_k_VariantHeaderMetadata_get[] = "VariantHeaderMetadata.get"; static const char __pyx_k_VariantHeaderRecord_items[] = "VariantHeaderRecord.items"; static const char __pyx_k_VariantHeader_add_samples[] = "VariantHeader.add_samples"; static const char __pyx_k_VariantRecordFilter_clear[] = "VariantRecordFilter.clear"; static const char __pyx_k_VariantRecordFilter_items[] = "VariantRecordFilter.items"; static const char __pyx_k_VariantRecordFormat_clear[] = "VariantRecordFormat.clear"; static const char __pyx_k_VariantRecordFormat_items[] = "VariantRecordFormat.items"; static const char __pyx_k_VariantRecordSample_clear[] = "VariantRecordSample.clear"; static const char __pyx_k_VariantRecordSample_items[] = "VariantRecordSample.items"; static const char __pyx_k_VariantRecordSamples_keys[] = "VariantRecordSamples.keys"; static const char __pyx_k_invalid_number_of_columns[] = "invalid number of columns"; static const char __pyx_k_BCFIndex___setstate_cython[] = "BCFIndex.__setstate_cython__"; static const char __pyx_k_TabixIndex___reduce_cython[] = "TabixIndex.__reduce_cython__"; static const char __pyx_k_VariantFile_subset_samples[] = "VariantFile.subset_samples"; static const char __pyx_k_VariantHeaderContigs_items[] = "VariantHeaderContigs.items"; static const char __pyx_k_VariantHeaderMetadata_keys[] = "VariantHeaderMetadata.keys"; static const char __pyx_k_VariantHeaderRecord___iter[] = "VariantHeaderRecord.__iter__"; static const char __pyx_k_VariantHeaderRecord_remove[] = "VariantHeaderRecord.remove"; static const char __pyx_k_VariantHeaderRecord_update[] = "VariantHeaderRecord.update"; static const char __pyx_k_VariantHeaderRecord_values[] = "VariantHeaderRecord.values"; static const char __pyx_k_VariantRecordFilter___iter[] = "VariantRecordFilter.__iter__"; static const char __pyx_k_VariantRecordFilter_values[] = "VariantRecordFilter.values"; static const char __pyx_k_VariantRecordFormat___iter[] = "VariantRecordFormat.__iter__"; static const char __pyx_k_VariantRecordFormat_values[] = "VariantRecordFormat.values"; static const char __pyx_k_VariantRecordInfo_iterkeys[] = "VariantRecordInfo.iterkeys"; static const char __pyx_k_VariantRecordSample___iter[] = "VariantRecordSample.__iter__"; static const char __pyx_k_VariantRecordSample_update[] = "VariantRecordSample.update"; static const char __pyx_k_VariantRecordSample_values[] = "VariantRecordSample.values"; static const char __pyx_k_VariantRecordSamples_items[] = "VariantRecordSamples.items"; static const char __pyx_k_cannot_set_null_alt_allele[] = "cannot set null alt allele"; static const char __pyx_k_error_in_bcf_subset_format[] = "error in bcf_subset_format"; static const char __pyx_k_pyx_unpickle_VariantContig[] = "__pyx_unpickle_VariantContig"; static const char __pyx_k_unsupported_info_type_code[] = "unsupported info type code"; static const char __pyx_k_BCFIterator___reduce_cython[] = "BCFIterator.__reduce_cython__"; static const char __pyx_k_BaseIndex___setstate_cython[] = "BaseIndex.__setstate_cython__"; static const char __pyx_k_Invalid_header_record_index[] = "Invalid header record index"; static const char __pyx_k_VariantContig_remove_header[] = "VariantContig.remove_header"; static const char __pyx_k_VariantFile___reduce_cython[] = "VariantFile.__reduce_cython__"; static const char __pyx_k_VariantHeaderContigs___iter[] = "VariantHeaderContigs.__iter__"; static const char __pyx_k_VariantHeaderContigs_values[] = "VariantHeaderContigs.values"; static const char __pyx_k_VariantHeaderMetadata_items[] = "VariantHeaderMetadata.items"; static const char __pyx_k_VariantHeaderRecords___iter[] = "VariantHeaderRecords.__iter__"; static const char __pyx_k_VariantHeaderSamples___iter[] = "VariantHeaderSamples.__iter__"; static const char __pyx_k_VariantRecordInfo_iteritems[] = "VariantRecordInfo.iteritems"; static const char __pyx_k_VariantRecordSamples___iter[] = "VariantRecordSamples.__iter__"; static const char __pyx_k_VariantRecordSamples_update[] = "VariantRecordSamples.update"; static const char __pyx_k_VariantRecordSamples_values[] = "VariantRecordSamples.values"; static const char __pyx_k_cannot_create_VariantHeader[] = "cannot create VariantHeader"; static const char __pyx_k_cannot_create_VariantRecord[] = "cannot create VariantRecord"; static const char __pyx_k_could_not_open_variant_file[] = "could not open variant file `{}`: {}"; static const char __pyx_k_dst_header_must_not_be_None[] = "dst_header must not be None"; static const char __pyx_k_invalid_header_record_index[] = "invalid header record index"; static const char __pyx_k_missing_d_requested_samples[] = "missing {:d} requested samples"; static const char __pyx_k_must_set_at_least_2_alleles[] = "must set at least 2 alleles"; static const char __pyx_k_ref_allele_must_not_be_null[] = "ref allele must not be null"; static const char __pyx_k_unable_to_fetch_next_record[] = "unable to fetch next record"; static const char __pyx_k_unable_to_parse_next_record[] = "unable to parse next record"; static const char __pyx_k_BaseIterator___reduce_cython[] = "BaseIterator.__reduce_cython__"; static const char __pyx_k_Header_already_exists_for_id[] = "Header already exists for id={}"; static const char __pyx_k_I_O_operation_on_closed_file[] = "I/O operation on closed file"; static const char __pyx_k_TabixIndex___setstate_cython[] = "TabixIndex.__setstate_cython__"; static const char __pyx_k_Unable_to_update_INFO_values[] = "Unable to update INFO values"; static const char __pyx_k_VariantHeaderMetadata___iter[] = "VariantHeaderMetadata.__iter__"; static const char __pyx_k_VariantHeaderMetadata_values[] = "VariantHeaderMetadata.values"; static const char __pyx_k_VariantHeaderRecord_iterkeys[] = "VariantHeaderRecord.iterkeys"; static const char __pyx_k_VariantRecordFilter_iterkeys[] = "VariantRecordFilter.iterkeys"; static const char __pyx_k_VariantRecordFormat_iterkeys[] = "VariantRecordFormat.iterkeys"; static const char __pyx_k_VariantRecordInfo_itervalues[] = "VariantRecordInfo.itervalues"; static const char __pyx_k_VariantRecordSample_iterkeys[] = "VariantRecordSample.iterkeys"; static const char __pyx_k_pyx_unpickle_VariantMetadata[] = "__pyx_unpickle_VariantMetadata"; static const char __pyx_k_unsupported_header_type_code[] = "unsupported header type code"; static const char __pyx_k_BCFIterator___setstate_cython[] = "BCFIterator.__setstate_cython__"; static const char __pyx_k_Error_unpacking_VariantRecord[] = "Error unpacking VariantRecord"; static const char __pyx_k_Stop_position_of_the_interval[] = "Stop position of the interval"; static const char __pyx_k_TabixIterator___reduce_cython[] = "TabixIterator.__reduce_cython__"; static const char __pyx_k_VariantContig___reduce_cython[] = "VariantContig.__reduce_cython__"; static const char __pyx_k_VariantFile___setstate_cython[] = "VariantFile.__setstate_cython__"; static const char __pyx_k_VariantHeaderContigs_iterkeys[] = "VariantHeaderContigs.iterkeys"; static const char __pyx_k_VariantHeaderRecord_iteritems[] = "VariantHeaderRecord.iteritems"; static const char __pyx_k_VariantHeader___reduce_cython[] = "VariantHeader.__reduce_cython__"; static const char __pyx_k_VariantMetadata_remove_header[] = "VariantMetadata.remove_header"; static const char __pyx_k_VariantRecordFilter_iteritems[] = "VariantRecordFilter.iteritems"; static const char __pyx_k_VariantRecordFormat_iteritems[] = "VariantRecordFormat.iteritems"; static const char __pyx_k_VariantRecordSample_iteritems[] = "VariantRecordSample.iteritems"; static const char __pyx_k_VariantRecordSamples_iterkeys[] = "VariantRecordSamples.iterkeys"; static const char __pyx_k_VariantRecord___reduce_cython[] = "VariantRecord.__reduce_cython__"; static const char __pyx_k_could_not_open_variant_file_2[] = "could not open variant file `{}`"; static const char __pyx_k_mode_must_begin_with_r_w_or_a[] = "mode must begin with r, w or a"; static const char __pyx_k_unable_to_allocate_BCF_record[] = "unable to allocate BCF record"; static const char __pyx_k_BaseIterator___setstate_cython[] = "BaseIterator.__setstate_cython__"; static const char __pyx_k_Unable_to_update_format_values[] = "Unable to update format values"; static const char __pyx_k_VariantFile_get_reference_name[] = "VariantFile.get_reference_name"; static const char __pyx_k_VariantHeaderContigs_iteritems[] = "VariantHeaderContigs.iteritems"; static const char __pyx_k_VariantHeaderMetadata_iterkeys[] = "VariantHeaderMetadata.iterkeys"; static const char __pyx_k_VariantHeaderRecord_itervalues[] = "VariantHeaderRecord.itervalues"; static const char __pyx_k_VariantRecordFilter_itervalues[] = "VariantRecordFilter.itervalues"; static const char __pyx_k_VariantRecordFormat_itervalues[] = "VariantRecordFormat.itervalues"; static const char __pyx_k_VariantRecordSample_itervalues[] = "VariantRecordSample.itervalues"; static const char __pyx_k_VariantRecordSamples_iteritems[] = "VariantRecordSamples.iteritems"; static const char __pyx_k_bcf_hdr_set_samples_failed_ret[] = "bcf_hdr_set_samples failed: ret = {}"; static const char __pyx_k_invalid_value_for_Float_format[] = "invalid value for Float format"; static const char __pyx_k_pyx_unpickle_VariantHeaderCont[] = "__pyx_unpickle_VariantHeaderContigs"; static const char __pyx_k_pyx_unpickle_VariantHeaderMeta[] = "__pyx_unpickle_VariantHeaderMetadata"; static const char __pyx_k_pyx_unpickle_VariantHeaderReco[] = "__pyx_unpickle_VariantHeaderRecords"; static const char __pyx_k_pyx_unpickle_VariantHeaderSamp[] = "__pyx_unpickle_VariantHeaderSamples"; static const char __pyx_k_pyx_unpickle_VariantRecordFilt[] = "__pyx_unpickle_VariantRecordFilter"; static const char __pyx_k_pyx_unpickle_VariantRecordForm[] = "__pyx_unpickle_VariantRecordFormat"; static const char __pyx_k_pyx_unpickle_VariantRecordInfo[] = "__pyx_unpickle_VariantRecordInfo"; static const char __pyx_k_pyx_unpickle_VariantRecordSamp[] = "__pyx_unpickle_VariantRecordSamples"; static const char __pyx_k_Invalid_VariantRecord_Number_of[] = "Invalid VariantRecord. Number of samples does not match header ({} vs {})"; static const char __pyx_k_Number_must_be_None_when_adding[] = "Number must be None when adding a filter"; static const char __pyx_k_TabixIterator___setstate_cython[] = "TabixIterator.__setstate_cython__"; static const char __pyx_k_Type_must_be_None_when_adding_a[] = "Type must be None when adding a filter"; static const char __pyx_k_VariantContig___setstate_cython[] = "VariantContig.__setstate_cython__"; static const char __pyx_k_VariantHeaderContigs___setstate[] = "VariantHeaderContigs.__setstate_cython__"; static const char __pyx_k_VariantHeaderContigs_itervalues[] = "VariantHeaderContigs.itervalues"; static const char __pyx_k_VariantHeaderMetadata_iteritems[] = "VariantHeaderMetadata.iteritems"; static const char __pyx_k_VariantHeaderRecords___setstate[] = "VariantHeaderRecords.__setstate_cython__"; static const char __pyx_k_VariantHeaderSamples___setstate[] = "VariantHeaderSamples.__setstate_cython__"; static const char __pyx_k_VariantHeader___setstate_cython[] = "VariantHeader.__setstate_cython__"; static const char __pyx_k_VariantMetadata___reduce_cython[] = "VariantMetadata.__reduce_cython__"; static const char __pyx_k_VariantRecordSamples___setstate[] = "VariantRecordSamples.__setstate_cython__"; static const char __pyx_k_VariantRecordSamples_itervalues[] = "VariantRecordSamples.itervalues"; static const char __pyx_k_VariantRecord___setstate_cython[] = "VariantRecord.__setstate_cython__"; static const char __pyx_k_bcf_check_values_locals_genexpr[] = "bcf_check_values.<locals>.genexpr"; static const char __pyx_k_cannot_iterate_over_Variantfile[] = "cannot iterate over Variantfile opened for writing"; static const char __pyx_k_file_does_not_have_valid_header[] = "file `{}` does not have valid header (mode=`{}`) - is it VCF/BCF format?"; static const char __pyx_k_invalid_file_mode_is_it_VCF_BCF[] = "invalid file `{}` (mode=`{}`) - is it VCF/BCF format?"; static const char __pyx_k_self_ptr_cannot_be_converted_to[] = "self.ptr cannot be converted to a Python object for pickling"; static const char __pyx_k_Cannot_add_extra_threads_when_ig[] = "Cannot add extra threads when \"ignore_truncation\" is True"; static const char __pyx_k_Cannot_copy_arrays_with_src_valu[] = "Cannot copy arrays with src_values={} > dst_values={}"; static const char __pyx_k_Cannot_set_phased_before_genotyp[] = "Cannot set phased before genotype is set"; static const char __pyx_k_Cannot_specify_an_index_filename[] = "Cannot specify an index filename when writing a VCF/BCF file"; static const char __pyx_k_Cannot_translate_record_Number_o[] = "Cannot translate record. Number of samples does not match header ({} vs {})"; static const char __pyx_k_END_is_a_reserved_attribute_acce[] = "END is a reserved attribute; access is via record.stop"; static const char __pyx_k_Flag_types_are_not_allowed_on_FO[] = "Flag types are not allowed on FORMATs"; static const char __pyx_k_Flag_values_must_be_True_False_N[] = "Flag values must be: True, False, None, 1, 0"; static const char __pyx_k_Header_already_exists_for_contig[] = "Header already exists for contig {}"; static const char __pyx_k_Incompatible_checksums_0x_x_vs_0[] = "Incompatible checksums (0x%x vs (0x1e0584a, 0x594fd16, 0x099fb99) = (header))"; static const char __pyx_k_Integer_value_too_small_large_to[] = "Integer value too small/large to store in VCF/BCF"; static const char __pyx_k_One_or_more_of_the_supplied_samp[] = "One or more of the supplied sample alleles are not defined as alleles of the corresponding pysam.libcbcf.VariantRecord.First set the .alleles of this record to define the alleles"; static const char __pyx_k_Start_coordinate_must_be_non_neg[] = "Start coordinate must be non-negative"; static const char __pyx_k_Stop_coordinate_must_be_non_nega[] = "Stop coordinate must be non-negative"; static const char __pyx_k_Use_allele_indices_to_set_intege[] = "Use .allele_indices to set integer allele indices"; static const char __pyx_k_VariantHeaderContigs___reduce_cy[] = "VariantHeaderContigs.__reduce_cython__"; static const char __pyx_k_VariantHeaderContigs_clear_heade[] = "VariantHeaderContigs.clear_header"; static const char __pyx_k_VariantHeaderContigs_remove_head[] = "VariantHeaderContigs.remove_header"; static const char __pyx_k_VariantHeaderMetadata___reduce_c[] = "VariantHeaderMetadata.__reduce_cython__"; static const char __pyx_k_VariantHeaderMetadata___setstate[] = "VariantHeaderMetadata.__setstate_cython__"; static const char __pyx_k_VariantHeaderMetadata_clear_head[] = "VariantHeaderMetadata.clear_header"; static const char __pyx_k_VariantHeaderMetadata_itervalues[] = "VariantHeaderMetadata.itervalues"; static const char __pyx_k_VariantHeaderMetadata_remove_hea[] = "VariantHeaderMetadata.remove_header"; static const char __pyx_k_VariantHeaderRecord___get___loca[] = "VariantHeaderRecord.__get__.<locals>.genexpr"; static const char __pyx_k_VariantHeaderRecord___reduce_cyt[] = "VariantHeaderRecord.__reduce_cython__"; static const char __pyx_k_VariantHeaderRecord___setstate_c[] = "VariantHeaderRecord.__setstate_cython__"; static const char __pyx_k_VariantHeaderRecords___reduce_cy[] = "VariantHeaderRecords.__reduce_cython__"; static const char __pyx_k_VariantHeaderSamples___reduce_cy[] = "VariantHeaderSamples.__reduce_cython__"; static const char __pyx_k_VariantMetadata___setstate_cytho[] = "VariantMetadata.__setstate_cython__"; static const char __pyx_k_VariantRecordFilter___reduce_cyt[] = "VariantRecordFilter.__reduce_cython__"; static const char __pyx_k_VariantRecordFilter___setstate_c[] = "VariantRecordFilter.__setstate_cython__"; static const char __pyx_k_VariantRecordFormat___reduce_cyt[] = "VariantRecordFormat.__reduce_cython__"; static const char __pyx_k_VariantRecordFormat___setstate_c[] = "VariantRecordFormat.__setstate_cython__"; static const char __pyx_k_VariantRecordInfo___reduce_cytho[] = "VariantRecordInfo.__reduce_cython__"; static const char __pyx_k_VariantRecordInfo___setstate_cyt[] = "VariantRecordInfo.__setstate_cython__"; static const char __pyx_k_VariantRecordSample___reduce_cyt[] = "VariantRecordSample.__reduce_cython__"; static const char __pyx_k_VariantRecordSample___set___loca[] = "VariantRecordSample.__set__.<locals>.genexpr"; static const char __pyx_k_VariantRecordSample___setstate_c[] = "VariantRecordSample.__setstate_cython__"; static const char __pyx_k_VariantRecordSamples___reduce_cy[] = "VariantRecordSamples.__reduce_cython__"; static const char __pyx_k_bcf_array_to_object_locals_genex[] = "bcf_array_to_object.<locals>.genexpr"; static const char __pyx_k_bcf_object_to_array_locals_genex[] = "bcf_object_to_array.<locals>.genexpr"; static const char __pyx_k_cannot_convert_deleted_record_to[] = "cannot convert deleted record to str"; static const char __pyx_k_cannot_create_VariantRecordSampl[] = "cannot create VariantRecordSample"; static const char __pyx_k_cannot_fetch_from_Variantfile_op[] = "cannot fetch from Variantfile opened for writing"; static const char __pyx_k_cannot_subset_samples_after_fetc[] = "cannot subset samples after fetching records"; static const char __pyx_k_cannot_subset_samples_from_Varia[] = "cannot subset samples from Variantfile opened for writing"; static const char __pyx_k_cannot_write_to_a_Variantfile_op[] = "cannot write to a Variantfile opened for reading"; static const char __pyx_k_char_array_to_tuple_locals_genex[] = "char_array_to_tuple.<locals>.genexpr"; static const char __pyx_k_either_value_or_items_must_be_sp[] = "either value or items must be specified"; static const char __pyx_k_genotype_is_only_valid_as_a_form[] = "genotype is only valid as a format field"; static const char __pyx_k_invalid_value_for_Integer_format[] = "invalid value for Integer format"; static const char __pyx_k_mode_contains_conflicting_format[] = "mode contains conflicting format specifiers: {}"; static const char __pyx_k_no_default___reduce___due_to_non[] = "no default __reduce__ due to non-trivial __cinit__"; static const char __pyx_k_pyx_unpickle_VariantRecordSamp_2[] = "__pyx_unpickle_VariantRecordSample"; static const char __pyx_k_self_iter_cannot_be_converted_to[] = "self.iter cannot be converted to a Python object for pickling"; static const char __pyx_k_this_class_cannot_be_instantiate[] = "this class cannot be instantiated from Python"; static const char __pyx_k_unable_to_reallocate_VariantHead[] = "unable to reallocate VariantHeader"; static const char __pyx_k_value_expected_to_be_scalar_give[] = "value expected to be scalar, given len={}"; static const char __pyx_k_values_expected_to_be_tuple_give[] = "values expected to be {}-tuple, given len={}"; static const char __pyx_k_Incompatible_checksums_0x_x_vs_0_2[] = "Incompatible checksums (0x%x vs (0xcd1335f, 0xa03cdd6, 0x9d0a56c) = (header, id, type))"; static const char __pyx_k_Incompatible_checksums_0x_x_vs_0_3[] = "Incompatible checksums (0x%x vs (0x816ca43, 0x0a33d30, 0xed5e66b) = (header, type))"; static const char __pyx_k_Incompatible_checksums_0x_x_vs_0_4[] = "Incompatible checksums (0x%x vs (0x2572060, 0x8ae1160, 0xbe66ecb) = (header, id))"; static const char __pyx_k_Incompatible_checksums_0x_x_vs_0_5[] = "Incompatible checksums (0x%x vs (0x70ce871, 0x275a700, 0xde17f0f) = (record))"; static const char __pyx_k_Incompatible_checksums_0x_x_vs_0_6[] = "Incompatible checksums (0x%x vs (0xeeb89f3, 0x59cf0f7, 0x5d6ff7b) = (index, record))"; static const char __pyx_k_Incompatible_checksums_0x_x_vs_0_7[] = "Incompatible checksums (0x%x vs (0x7898a51, 0x1fe4488, 0xd936de3) = (refmap, refs))"; /* #### Code section: decls ### */ static int __pyx_pf_7cpython_5array_5array___getbuffer__(arrayobject *__pyx_v_self, Py_buffer *__pyx_v_info, CYTHON_UNUSED int __pyx_v_flags); /* proto */ static void __pyx_pf_7cpython_5array_5array_2__releasebuffer__(CYTHON_UNUSED arrayobject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19char_array_to_tuple_genexpr(PyObject *__pyx_self, Py_ssize_t __pyx_genexpr_arg_0); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19bcf_array_to_object_genexpr(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_genexpr_arg_0); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19bcf_object_to_array_genexpr(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_genexpr_arg_0); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_16bcf_check_values_genexpr(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_genexpr_arg_0); /* proto */ static int __pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord___init__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_args, CYTHON_UNUSED PyObject *__pyx_v_kwargs); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_4type___get__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_3key___get__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_5value___get__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_5attrs_7__get___genexpr(PyObject *__pyx_self, int __pyx_genexpr_arg_0); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_5attrs___get__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self); /* proto */ static Py_ssize_t __pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_2__len__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_4__bool__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_6__getitem__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_8__iter__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_11get(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self, PyObject *__pyx_v_key, PyObject *__pyx_v_default); /* proto */ static int __pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_13__contains__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_15iterkeys(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_17itervalues(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_20iteritems(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_23keys(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_25items(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_27values(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_29update(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self, PyObject *__pyx_v_items, PyObject *__pyx_v_kwargs); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_31pop(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self, PyObject *__pyx_v_key, PyObject *__pyx_v_default); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_33__str__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_35remove(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_6header___get__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_37__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantHeaderRecord_39__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5pysam_7libcbcf_20VariantHeaderRecords___init__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_args, CYTHON_UNUSED PyObject *__pyx_v_kwargs); /* proto */ static Py_ssize_t __pyx_pf_5pysam_7libcbcf_20VariantHeaderRecords_2__len__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_20VariantHeaderRecords_4__bool__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderRecords_6__getitem__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords *__pyx_v_self, PyObject *__pyx_v_index); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderRecords_8__iter__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderRecords_6header___get__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderRecords_11__reduce_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderRecords_13__setstate_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5pysam_7libcbcf_15VariantMetadata___init__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_VariantMetadata *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_args, CYTHON_UNUSED PyObject *__pyx_v_kwargs); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_15VariantMetadata_4name___get__(struct __pyx_obj_5pysam_7libcbcf_VariantMetadata *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_15VariantMetadata_2id___get__(struct __pyx_obj_5pysam_7libcbcf_VariantMetadata *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_15VariantMetadata_6number___get__(struct __pyx_obj_5pysam_7libcbcf_VariantMetadata *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_15VariantMetadata_4type___get__(struct __pyx_obj_5pysam_7libcbcf_VariantMetadata *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_15VariantMetadata_11description___get__(struct __pyx_obj_5pysam_7libcbcf_VariantMetadata *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_15VariantMetadata_6record___get__(struct __pyx_obj_5pysam_7libcbcf_VariantMetadata *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_15VariantMetadata_2remove_header(struct __pyx_obj_5pysam_7libcbcf_VariantMetadata *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_15VariantMetadata_6header___get__(struct __pyx_obj_5pysam_7libcbcf_VariantMetadata *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_15VariantMetadata_4__reduce_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantMetadata *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_15VariantMetadata_6__setstate_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantMetadata *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5pysam_7libcbcf_21VariantHeaderMetadata___init__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_args, CYTHON_UNUSED PyObject *__pyx_v_kwargs); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_21VariantHeaderMetadata_2add(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self, PyObject *__pyx_v_id, PyObject *__pyx_v_number, PyObject *__pyx_v_type, PyObject *__pyx_v_description, PyObject *__pyx_v_kwargs); /* proto */ static Py_ssize_t __pyx_pf_5pysam_7libcbcf_21VariantHeaderMetadata_4__len__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_21VariantHeaderMetadata_6__bool__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_21VariantHeaderMetadata_8__getitem__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_21VariantHeaderMetadata_10remove_header(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_21VariantHeaderMetadata_12clear_header(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_21VariantHeaderMetadata_14__iter__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_21VariantHeaderMetadata_17get(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self, PyObject *__pyx_v_key, PyObject *__pyx_v_default); /* proto */ static int __pyx_pf_5pysam_7libcbcf_21VariantHeaderMetadata_19__contains__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_21VariantHeaderMetadata_21iterkeys(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_21VariantHeaderMetadata_23itervalues(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_21VariantHeaderMetadata_26iteritems(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_21VariantHeaderMetadata_29keys(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_21VariantHeaderMetadata_31items(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_21VariantHeaderMetadata_33values(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_21VariantHeaderMetadata_6header___get__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_21VariantHeaderMetadata_35__reduce_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_21VariantHeaderMetadata_37__setstate_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5pysam_7libcbcf_13VariantContig___init__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_VariantContig *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_args, CYTHON_UNUSED PyObject *__pyx_v_kwargs); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantContig_4name___get__(struct __pyx_obj_5pysam_7libcbcf_VariantContig *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantContig_2id___get__(struct __pyx_obj_5pysam_7libcbcf_VariantContig *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantContig_6length___get__(struct __pyx_obj_5pysam_7libcbcf_VariantContig *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantContig_13header_record___get__(struct __pyx_obj_5pysam_7libcbcf_VariantContig *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantContig_2remove_header(struct __pyx_obj_5pysam_7libcbcf_VariantContig *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantContig_6header___get__(struct __pyx_obj_5pysam_7libcbcf_VariantContig *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantContig_4__reduce_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantContig *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantContig_6__setstate_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantContig *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5pysam_7libcbcf_20VariantHeaderContigs___init__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_args, CYTHON_UNUSED PyObject *__pyx_v_kwargs); /* proto */ static Py_ssize_t __pyx_pf_5pysam_7libcbcf_20VariantHeaderContigs_2__len__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_20VariantHeaderContigs_4__bool__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderContigs_6__getitem__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderContigs_8remove_header(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderContigs_10clear_header(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderContigs_12__iter__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderContigs_15get(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self, PyObject *__pyx_v_key, PyObject *__pyx_v_default); /* proto */ static int __pyx_pf_5pysam_7libcbcf_20VariantHeaderContigs_17__contains__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderContigs_19iterkeys(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderContigs_21itervalues(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderContigs_24iteritems(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderContigs_27keys(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderContigs_29items(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderContigs_31values(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderContigs_33add(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self, PyObject *__pyx_v_id, PyObject *__pyx_v_length, PyObject *__pyx_v_kwargs); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderContigs_6header___get__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderContigs_35__reduce_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderContigs_37__setstate_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5pysam_7libcbcf_20VariantHeaderSamples___init__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_args, CYTHON_UNUSED PyObject *__pyx_v_kwargs); /* proto */ static Py_ssize_t __pyx_pf_5pysam_7libcbcf_20VariantHeaderSamples_2__len__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_20VariantHeaderSamples_4__bool__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderSamples_6__getitem__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples *__pyx_v_self, PyObject *__pyx_v_index); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderSamples_8__iter__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_20VariantHeaderSamples_11__contains__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderSamples_13add(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples *__pyx_v_self, PyObject *__pyx_v_name); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderSamples_6header___get__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderSamples_15__reduce_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantHeaderSamples_17__setstate_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5pysam_7libcbcf_13VariantHeader___cinit__(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_13VariantHeader_2__init__(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self); /* proto */ static void __pyx_pf_5pysam_7libcbcf_13VariantHeader_4__dealloc__(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_13VariantHeader_6__bool__(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantHeader_8copy(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantHeader_10merge(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self, struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_header); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantHeader_7version___get__(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantHeader_7samples___get__(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantHeader_7records___get__(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantHeader_7contigs___get__(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantHeader_7filters___get__(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantHeader_4info___get__(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantHeader_7formats___get__(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantHeader_4alts___get__(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantHeader_12__str__(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantHeader_14new_record(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self, PyObject *__pyx_v_contig, PyObject *__pyx_v_start, PyObject *__pyx_v_stop, PyObject *__pyx_v_alleles, PyObject *__pyx_v_id, PyObject *__pyx_v_qual, PyObject *__pyx_v_filter, PyObject *__pyx_v_info, PyObject *__pyx_v_samples, PyObject *__pyx_v_kwargs); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantHeader_16add_record(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self, struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *__pyx_v_record); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantHeader_18add_line(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self, PyObject *__pyx_v_line); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantHeader_20add_meta(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self, PyObject *__pyx_v_key, PyObject *__pyx_v_value, PyObject *__pyx_v_items); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantHeader_22add_sample(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self, PyObject *__pyx_v_name); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantHeader_24add_samples(struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self, PyObject *__pyx_v_args); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantHeader_26__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantHeader_28__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5pysam_7libcbcf_19VariantRecordFilter___init__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_args, CYTHON_UNUSED PyObject *__pyx_v_kwargs); /* proto */ static Py_ssize_t __pyx_pf_5pysam_7libcbcf_19VariantRecordFilter_2__len__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_19VariantRecordFilter_4__bool__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFilter_6__getitem__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFilter_8add(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static int __pyx_pf_5pysam_7libcbcf_19VariantRecordFilter_10__delitem__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFilter_12clear(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFilter_14__iter__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFilter_17get(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self, PyObject *__pyx_v_key, PyObject *__pyx_v_default); /* proto */ static int __pyx_pf_5pysam_7libcbcf_19VariantRecordFilter_19__contains__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFilter_21iterkeys(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFilter_23itervalues(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFilter_26iteritems(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFilter_29keys(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFilter_31items(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFilter_33values(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFilter_35__richcmp__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self, struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_other, int __pyx_v_op); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFilter_37__reduce_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFilter_39__setstate_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5pysam_7libcbcf_19VariantRecordFormat___init__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_args, CYTHON_UNUSED PyObject *__pyx_v_kwargs); /* proto */ static Py_ssize_t __pyx_pf_5pysam_7libcbcf_19VariantRecordFormat_2__len__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_19VariantRecordFormat_4__bool__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFormat_6__getitem__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static int __pyx_pf_5pysam_7libcbcf_19VariantRecordFormat_8__delitem__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFormat_10clear(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFormat_12__iter__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFormat_15get(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *__pyx_v_self, PyObject *__pyx_v_key, PyObject *__pyx_v_default); /* proto */ static int __pyx_pf_5pysam_7libcbcf_19VariantRecordFormat_17__contains__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFormat_19iterkeys(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFormat_21itervalues(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFormat_24iteritems(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFormat_27keys(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFormat_29items(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFormat_31values(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFormat_33__reduce_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordFormat_35__setstate_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5pysam_7libcbcf_17VariantRecordInfo___init__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_args, CYTHON_UNUSED PyObject *__pyx_v_kwargs); /* proto */ static Py_ssize_t __pyx_pf_5pysam_7libcbcf_17VariantRecordInfo_2__len__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_17VariantRecordInfo_4__bool__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_17VariantRecordInfo_6__getitem__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static int __pyx_pf_5pysam_7libcbcf_17VariantRecordInfo_8__setitem__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self, PyObject *__pyx_v_key, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5pysam_7libcbcf_17VariantRecordInfo_10__delitem__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_17VariantRecordInfo_12clear(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_17VariantRecordInfo_14__iter__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_17VariantRecordInfo_17get(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self, PyObject *__pyx_v_key, PyObject *__pyx_v_default); /* proto */ static int __pyx_pf_5pysam_7libcbcf_17VariantRecordInfo_19__contains__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_17VariantRecordInfo_21iterkeys(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_17VariantRecordInfo_23itervalues(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_17VariantRecordInfo_26iteritems(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_17VariantRecordInfo_29keys(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_17VariantRecordInfo_31items(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_17VariantRecordInfo_33values(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_17VariantRecordInfo_35update(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self, PyObject *__pyx_v_items, PyObject *__pyx_v_kwargs); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_17VariantRecordInfo_37pop(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self, PyObject *__pyx_v_key, PyObject *__pyx_v_default); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_17VariantRecordInfo_39__richcmp__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self, struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_other, int __pyx_v_op); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_17VariantRecordInfo_41__reduce_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_17VariantRecordInfo_43__setstate_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5pysam_7libcbcf_20VariantRecordSamples___init__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_args, CYTHON_UNUSED PyObject *__pyx_v_kwargs); /* proto */ static Py_ssize_t __pyx_pf_5pysam_7libcbcf_20VariantRecordSamples_2__len__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_20VariantRecordSamples_4__bool__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantRecordSamples_6__getitem__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantRecordSamples_8__iter__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantRecordSamples_11get(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_self, PyObject *__pyx_v_key, PyObject *__pyx_v_default); /* proto */ static int __pyx_pf_5pysam_7libcbcf_20VariantRecordSamples_13__contains__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantRecordSamples_15iterkeys(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantRecordSamples_17itervalues(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantRecordSamples_20iteritems(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantRecordSamples_23keys(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantRecordSamples_25items(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantRecordSamples_27values(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantRecordSamples_29update(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_self, PyObject *__pyx_v_items, PyObject *__pyx_v_kwargs); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantRecordSamples_31pop(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_self, PyObject *__pyx_v_key, PyObject *__pyx_v_default); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantRecordSamples_33__richcmp__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_self, struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_other, int __pyx_v_op); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantRecordSamples_35__reduce_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20VariantRecordSamples_37__setstate_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5pysam_7libcbcf_13VariantRecord___init__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_args, CYTHON_UNUSED PyObject *__pyx_v_kwargs); /* proto */ static void __pyx_pf_5pysam_7libcbcf_13VariantRecord_2__dealloc__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_4copy(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_6translate(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self, struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_dst_header); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_3rid___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_13VariantRecord_3rid_2__set__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_5chrom___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_13VariantRecord_5chrom_2__set__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_6contig___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_13VariantRecord_6contig_2__set__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_3pos___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_13VariantRecord_3pos_2__set__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_5start___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_13VariantRecord_5start_2__set__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_4stop___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_13VariantRecord_4stop_2__set__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_4rlen___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_13VariantRecord_4rlen_2__set__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_4qual___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_13VariantRecord_4qual_2__set__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_2id___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_13VariantRecord_2id_2__set__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_3ref___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_13VariantRecord_3ref_2__set__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_7alleles___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_13VariantRecord_7alleles_2__set__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self, PyObject *__pyx_v_values); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_4alts___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_13VariantRecord_4alts_2__set__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_6filter___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_4info___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_6format___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_7samples___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_21alleles_variant_types___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_8__richcmp__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self, struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_other, int __pyx_v_op); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_10__str__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_6header___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_12__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13VariantRecord_14__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5pysam_7libcbcf_19VariantRecordSample___init__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_args, CYTHON_UNUSED PyObject *__pyx_v_kwargs); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_4name___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_14allele_indices___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_19VariantRecordSample_14allele_indices_2__set__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5pysam_7libcbcf_19VariantRecordSample_14allele_indices_4__del__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_7alleles___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_7alleles_7__set___genexpr(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_genexpr_arg_0); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_7alleles_7__set___3genexpr(PyObject *__pyx_self, PyObject *__pyx_genexpr_arg_0); /* proto */ static int __pyx_pf_5pysam_7libcbcf_19VariantRecordSample_7alleles_2__set__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5pysam_7libcbcf_19VariantRecordSample_7alleles_4__del__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_6phased___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_19VariantRecordSample_6phased_2__set__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self, PyObject *__pyx_v_value); /* proto */ static Py_ssize_t __pyx_pf_5pysam_7libcbcf_19VariantRecordSample_2__len__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_19VariantRecordSample_4__bool__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_6__getitem__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static int __pyx_pf_5pysam_7libcbcf_19VariantRecordSample_8__setitem__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self, PyObject *__pyx_v_key, PyObject *__pyx_v_value); /* proto */ static int __pyx_pf_5pysam_7libcbcf_19VariantRecordSample_10__delitem__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_12clear(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_14__iter__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_17get(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self, PyObject *__pyx_v_key, PyObject *__pyx_v_default); /* proto */ static int __pyx_pf_5pysam_7libcbcf_19VariantRecordSample_19__contains__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_21iterkeys(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_23itervalues(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_26iteritems(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_29keys(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_31items(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_33values(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_35update(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self, PyObject *__pyx_v_items, PyObject *__pyx_v_kwargs); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_37pop(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self, PyObject *__pyx_v_key, PyObject *__pyx_v_default); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_39__richcmp__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self, struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_other, int __pyx_v_op); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_5index___get__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_41__reduce_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_19VariantRecordSample_43__setstate_cython__(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5pysam_7libcbcf_9BaseIndex___init__(struct __pyx_obj_5pysam_7libcbcf_BaseIndex *__pyx_v_self); /* proto */ static Py_ssize_t __pyx_pf_5pysam_7libcbcf_9BaseIndex_2__len__(struct __pyx_obj_5pysam_7libcbcf_BaseIndex *__pyx_v_self); /* proto */ static int __pyx_pf_5pysam_7libcbcf_9BaseIndex_4__bool__(struct __pyx_obj_5pysam_7libcbcf_BaseIndex *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_9BaseIndex_6__getitem__(struct __pyx_obj_5pysam_7libcbcf_BaseIndex *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_9BaseIndex_8__iter__(struct __pyx_obj_5pysam_7libcbcf_BaseIndex *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_9BaseIndex_10get(struct __pyx_obj_5pysam_7libcbcf_BaseIndex *__pyx_v_self, PyObject *__pyx_v_key, PyObject *__pyx_v_default); /* proto */ static int __pyx_pf_5pysam_7libcbcf_9BaseIndex_12__contains__(struct __pyx_obj_5pysam_7libcbcf_BaseIndex *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_9BaseIndex_14iterkeys(struct __pyx_obj_5pysam_7libcbcf_BaseIndex *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_9BaseIndex_16itervalues(struct __pyx_obj_5pysam_7libcbcf_BaseIndex *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_9BaseIndex_19iteritems(struct __pyx_obj_5pysam_7libcbcf_BaseIndex *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_9BaseIndex_22keys(struct __pyx_obj_5pysam_7libcbcf_BaseIndex *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_9BaseIndex_24items(struct __pyx_obj_5pysam_7libcbcf_BaseIndex *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_9BaseIndex_26values(struct __pyx_obj_5pysam_7libcbcf_BaseIndex *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_9BaseIndex_28update(struct __pyx_obj_5pysam_7libcbcf_BaseIndex *__pyx_v_self, PyObject *__pyx_v_items, PyObject *__pyx_v_kwargs); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_9BaseIndex_30pop(struct __pyx_obj_5pysam_7libcbcf_BaseIndex *__pyx_v_self, PyObject *__pyx_v_key, PyObject *__pyx_v_default); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_9BaseIndex_32__reduce_cython__(struct __pyx_obj_5pysam_7libcbcf_BaseIndex *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_9BaseIndex_34__setstate_cython__(struct __pyx_obj_5pysam_7libcbcf_BaseIndex *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5pysam_7libcbcf_8BCFIndex___init__(struct __pyx_obj_5pysam_7libcbcf_BCFIndex *__pyx_v_self); /* proto */ static void __pyx_pf_5pysam_7libcbcf_8BCFIndex_2__dealloc__(struct __pyx_obj_5pysam_7libcbcf_BCFIndex *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_8BCFIndex_4fetch(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_BCFIndex *__pyx_v_self, PyObject *__pyx_v_bcf, PyObject *__pyx_v_contig, PyObject *__pyx_v_start, PyObject *__pyx_v_stop, PyObject *__pyx_v_reopen); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_8BCFIndex_6header___get__(struct __pyx_obj_5pysam_7libcbcf_BCFIndex *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_8BCFIndex_6__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_BCFIndex *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_8BCFIndex_8__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_BCFIndex *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5pysam_7libcbcf_10TabixIndex___init__(struct __pyx_obj_5pysam_7libcbcf_TabixIndex *__pyx_v_self); /* proto */ static void __pyx_pf_5pysam_7libcbcf_10TabixIndex_2__dealloc__(struct __pyx_obj_5pysam_7libcbcf_TabixIndex *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_10TabixIndex_4fetch(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_TabixIndex *__pyx_v_self, PyObject *__pyx_v_bcf, PyObject *__pyx_v_contig, PyObject *__pyx_v_start, PyObject *__pyx_v_stop, PyObject *__pyx_v_reopen); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_10TabixIndex_6__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_TabixIndex *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_10TabixIndex_8__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_TabixIndex *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_12BaseIterator___reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_BaseIterator *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_12BaseIterator_2__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_BaseIterator *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5pysam_7libcbcf_11BCFIterator___init__(struct __pyx_obj_5pysam_7libcbcf_BCFIterator *__pyx_v_self, struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_bcf, PyObject *__pyx_v_contig, PyObject *__pyx_v_start, PyObject *__pyx_v_stop, PyObject *__pyx_v_reopen); /* proto */ static void __pyx_pf_5pysam_7libcbcf_11BCFIterator_2__dealloc__(struct __pyx_obj_5pysam_7libcbcf_BCFIterator *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11BCFIterator_4__iter__(struct __pyx_obj_5pysam_7libcbcf_BCFIterator *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11BCFIterator_6__next__(struct __pyx_obj_5pysam_7libcbcf_BCFIterator *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11BCFIterator_8__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_BCFIterator *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11BCFIterator_10__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_BCFIterator *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5pysam_7libcbcf_13TabixIterator___cinit__(struct __pyx_obj_5pysam_7libcbcf_TabixIterator *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_args, CYTHON_UNUSED PyObject *__pyx_v_kwargs); /* proto */ static int __pyx_pf_5pysam_7libcbcf_13TabixIterator_2__init__(struct __pyx_obj_5pysam_7libcbcf_TabixIterator *__pyx_v_self, struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_bcf, PyObject *__pyx_v_contig, PyObject *__pyx_v_start, PyObject *__pyx_v_stop, PyObject *__pyx_v_reopen); /* proto */ static void __pyx_pf_5pysam_7libcbcf_13TabixIterator_4__dealloc__(struct __pyx_obj_5pysam_7libcbcf_TabixIterator *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13TabixIterator_6__iter__(struct __pyx_obj_5pysam_7libcbcf_TabixIterator *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13TabixIterator_8__next__(struct __pyx_obj_5pysam_7libcbcf_TabixIterator *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13TabixIterator_10__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_TabixIterator *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_13TabixIterator_12__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_TabixIterator *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */ static int __pyx_pf_5pysam_7libcbcf_11VariantFile___cinit__(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_args, CYTHON_UNUSED PyObject *__pyx_v_kwargs); /* proto */ static int __pyx_pf_5pysam_7libcbcf_11VariantFile_2__init__(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self, PyObject *__pyx_v_args, PyObject *__pyx_v_kwargs); /* proto */ static void __pyx_pf_5pysam_7libcbcf_11VariantFile_4__dealloc__(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11VariantFile_6close(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11VariantFile_8__iter__(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11VariantFile_10__next__(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11VariantFile_12copy(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11VariantFile_14open(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self, PyObject *__pyx_v_filename, PyObject *__pyx_v_mode, PyObject *__pyx_v_index_filename, struct __pyx_obj_5pysam_7libcbcf_VariantHeader *__pyx_v_header, PyObject *__pyx_v_drop_samples, PyObject *__pyx_v_duplicate_filehandle, PyObject *__pyx_v_ignore_truncation, PyObject *__pyx_v_threads); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11VariantFile_16reset(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11VariantFile_18is_valid_tid(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self, PyObject *__pyx_v_tid); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11VariantFile_20get_tid(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self, PyObject *__pyx_v_reference); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11VariantFile_22get_reference_name(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self, PyObject *__pyx_v_tid); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11VariantFile_24fetch(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self, PyObject *__pyx_v_contig, PyObject *__pyx_v_start, PyObject *__pyx_v_stop, PyObject *__pyx_v_region, PyObject *__pyx_v_reopen, PyObject *__pyx_v_end, PyObject *__pyx_v_reference); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11VariantFile_26new_record(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self, PyObject *__pyx_v_args, PyObject *__pyx_v_kwargs); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11VariantFile_28write(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self, struct __pyx_obj_5pysam_7libcbcf_VariantRecord *__pyx_v_record); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11VariantFile_30subset_samples(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self, PyObject *__pyx_v_include_samples); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11VariantFile_6header___get__(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11VariantFile_5index___get__(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11VariantFile_12drop_samples___get__(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11VariantFile_10is_reading___get__(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11VariantFile_14header_written___get__(struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11VariantFile_32__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_11VariantFile_34__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_5pysam_7libcbcf_VariantFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf___pyx_unpickle_VariantHeaderRecords(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_2__pyx_unpickle_VariantMetadata(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_4__pyx_unpickle_VariantHeaderMetadata(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_6__pyx_unpickle_VariantContig(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_8__pyx_unpickle_VariantHeaderContigs(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_10__pyx_unpickle_VariantHeaderSamples(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_12__pyx_unpickle_VariantRecordFilter(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_14__pyx_unpickle_VariantRecordFormat(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_16__pyx_unpickle_VariantRecordInfo(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_18__pyx_unpickle_VariantRecordSamples(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_20__pyx_unpickle_VariantRecordSample(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_pf_5pysam_7libcbcf_22__pyx_unpickle_BaseIndex(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantHeader(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantHeaderRecord(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantHeaderRecords(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantHeaderContigs(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantHeaderSamples(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantContig(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantMetadata(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantHeaderMetadata(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantRecord(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantRecordFilter(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantRecordFormat(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantRecordInfo(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantRecordSamples(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantRecordSample(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf_BaseIndex(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf_BCFIndex(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf_BaseIterator(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf_BCFIterator(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf_TabixIterator(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantFile(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_1_genexpr(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_2_genexpr(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_3_genexpr(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_4_genexpr(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_5___get__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_6_genexpr(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_7___iter__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_8_itervalues(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_9_iteritems(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_10___iter__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_11___iter__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_12_itervalues(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_13_iteritems(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_14___iter__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_15_itervalues(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_16_iteritems(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_17___iter__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_18___iter__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_19_itervalues(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_20_iteritems(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_21___iter__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_22_itervalues(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_23_iteritems(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_24___iter__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_25_itervalues(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_26_iteritems(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_27___iter__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_28_itervalues(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_29_iteritems(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_30___set__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_31_genexpr(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_32_genexpr(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_33___iter__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_34_itervalues(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_35_iteritems(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_36_itervalues(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_37_iteritems(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static __Pyx_CachedCFunction __pyx_umethod_PyBytes_Type_split = {0, 0, 0, 0, 0}; static __Pyx_CachedCFunction __pyx_umethod_PyDict_Type_items = {0, 0, 0, 0, 0}; static __Pyx_CachedCFunction __pyx_umethod_PyDict_Type_pop = {0, 0, 0, 0, 0}; static __Pyx_CachedCFunction __pyx_umethod_PyUnicode_Type_format = {0, 0, 0, 0, 0}; /* #### Code section: late_includes ### */ /* #### Code section: module_state ### */ typedef struct { PyObject *__pyx_d; PyObject *__pyx_b; PyObject *__pyx_cython_runtime; PyObject *__pyx_empty_tuple; PyObject *__pyx_empty_bytes; PyObject *__pyx_empty_unicode; #ifdef __Pyx_CyFunction_USED PyTypeObject *__pyx_CyFunctionType; #endif #ifdef __Pyx_FusedFunction_USED PyTypeObject *__pyx_FusedFunctionType; #endif #ifdef __Pyx_Generator_USED PyTypeObject *__pyx_GeneratorType; #endif #ifdef __Pyx_IterableCoroutine_USED PyTypeObject *__pyx_IterableCoroutineType; #endif #ifdef __Pyx_Coroutine_USED PyTypeObject *__pyx_CoroutineAwaitType; #endif #ifdef __Pyx_Coroutine_USED PyTypeObject *__pyx_CoroutineType; #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif PyTypeObject *__pyx_ptype_5pysam_10libchtslib_HTSFile; #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif PyTypeObject *__pyx_ptype_7cpython_4type_type; #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif PyTypeObject *__pyx_ptype_7cpython_4bool_bool; #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif PyTypeObject *__pyx_ptype_7cpython_7complex_complex; #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif PyTypeObject *__pyx_ptype_7cpython_5array_array; #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE PyObject *__pyx_type_5pysam_7libcbcf_VariantHeader; PyObject *__pyx_type_5pysam_7libcbcf_VariantHeaderRecord; PyObject *__pyx_type_5pysam_7libcbcf_VariantHeaderRecords; PyObject *__pyx_type_5pysam_7libcbcf_VariantHeaderContigs; PyObject *__pyx_type_5pysam_7libcbcf_VariantHeaderSamples; PyObject *__pyx_type_5pysam_7libcbcf_VariantContig; PyObject *__pyx_type_5pysam_7libcbcf_VariantMetadata; PyObject *__pyx_type_5pysam_7libcbcf_VariantHeaderMetadata; PyObject *__pyx_type_5pysam_7libcbcf_VariantRecord; PyObject *__pyx_type_5pysam_7libcbcf_VariantRecordFilter; PyObject *__pyx_type_5pysam_7libcbcf_VariantRecordFormat; PyObject *__pyx_type_5pysam_7libcbcf_VariantRecordInfo; PyObject *__pyx_type_5pysam_7libcbcf_VariantRecordSamples; PyObject *__pyx_type_5pysam_7libcbcf_VariantRecordSample; PyObject *__pyx_type_5pysam_7libcbcf_BaseIndex; PyObject *__pyx_type_5pysam_7libcbcf_BCFIndex; PyObject *__pyx_type_5pysam_7libcbcf_TabixIndex; PyObject *__pyx_type_5pysam_7libcbcf_BaseIterator; PyObject *__pyx_type_5pysam_7libcbcf_BCFIterator; PyObject *__pyx_type_5pysam_7libcbcf_TabixIterator; PyObject *__pyx_type_5pysam_7libcbcf_VariantFile; PyObject *__pyx_type_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple; PyObject *__pyx_type_5pysam_7libcbcf___pyx_scope_struct_1_genexpr; PyObject *__pyx_type_5pysam_7libcbcf___pyx_scope_struct_2_genexpr; PyObject *__pyx_type_5pysam_7libcbcf___pyx_scope_struct_3_genexpr; PyObject *__pyx_type_5pysam_7libcbcf___pyx_scope_struct_4_genexpr; PyObject *__pyx_type_5pysam_7libcbcf___pyx_scope_struct_5___get__; PyObject *__pyx_type_5pysam_7libcbcf___pyx_scope_struct_6_genexpr; PyObject *__pyx_type_5pysam_7libcbcf___pyx_scope_struct_7___iter__; PyObject *__pyx_type_5pysam_7libcbcf___pyx_scope_struct_8_itervalues; PyObject *__pyx_type_5pysam_7libcbcf___pyx_scope_struct_9_iteritems; PyObject *__pyx_type_5pysam_7libcbcf___pyx_scope_struct_10___iter__; PyObject *__pyx_type_5pysam_7libcbcf___pyx_scope_struct_11___iter__; PyObject 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Py_CLEAR(clear_module_state->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_10___iter__); Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_11___iter__); Py_CLEAR(clear_module_state->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_11___iter__); Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_12_itervalues); Py_CLEAR(clear_module_state->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_12_itervalues); Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_13_iteritems); Py_CLEAR(clear_module_state->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_13_iteritems); Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_14___iter__); Py_CLEAR(clear_module_state->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_14___iter__); Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_15_itervalues); Py_CLEAR(clear_module_state->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_15_itervalues); Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_16_iteritems); Py_CLEAR(clear_module_state->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_16_iteritems); Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_17___iter__); Py_CLEAR(clear_module_state->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_17___iter__); Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_18___iter__); Py_CLEAR(clear_module_state->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_18___iter__); Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_19_itervalues); Py_CLEAR(clear_module_state->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_19_itervalues); Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_20_iteritems); Py_CLEAR(clear_module_state->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_20_iteritems); Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_21___iter__); 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Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_27___iter__); Py_CLEAR(clear_module_state->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_27___iter__); Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_28_itervalues); Py_CLEAR(clear_module_state->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_28_itervalues); Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_29_iteritems); Py_CLEAR(clear_module_state->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_29_iteritems); Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_30___set__); Py_CLEAR(clear_module_state->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_30___set__); Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_31_genexpr); Py_CLEAR(clear_module_state->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_31_genexpr); Py_CLEAR(clear_module_state->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_32_genexpr); 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Py_CLEAR(clear_module_state->__pyx_n_s_VariantRecordSamples___iter); Py_CLEAR(clear_module_state->__pyx_n_s_VariantRecordSamples___reduce_cy); Py_CLEAR(clear_module_state->__pyx_n_s_VariantRecordSamples___setstate); Py_CLEAR(clear_module_state->__pyx_n_s_VariantRecordSamples_get); Py_CLEAR(clear_module_state->__pyx_n_s_VariantRecordSamples_items); Py_CLEAR(clear_module_state->__pyx_n_s_VariantRecordSamples_iteritems); Py_CLEAR(clear_module_state->__pyx_n_s_VariantRecordSamples_iterkeys); Py_CLEAR(clear_module_state->__pyx_n_s_VariantRecordSamples_itervalues); Py_CLEAR(clear_module_state->__pyx_n_s_VariantRecordSamples_keys); Py_CLEAR(clear_module_state->__pyx_n_s_VariantRecordSamples_pop); Py_CLEAR(clear_module_state->__pyx_n_s_VariantRecordSamples_update); Py_CLEAR(clear_module_state->__pyx_n_s_VariantRecordSamples_values); Py_CLEAR(clear_module_state->__pyx_n_s_VariantRecord___reduce_cython); Py_CLEAR(clear_module_state->__pyx_n_s_VariantRecord___setstate_cython); 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Py_CLEAR(clear_module_state->__pyx_n_s_bgzfp); Py_CLEAR(clear_module_state->__pyx_n_s_bkey); Py_CLEAR(clear_module_state->__pyx_n_s_bline); Py_CLEAR(clear_module_state->__pyx_kp_u_cannot_convert_deleted_record_to); Py_CLEAR(clear_module_state->__pyx_kp_u_cannot_create_VariantHeader); Py_CLEAR(clear_module_state->__pyx_kp_u_cannot_create_VariantRecord); Py_CLEAR(clear_module_state->__pyx_kp_u_cannot_create_VariantRecordSampl); Py_CLEAR(clear_module_state->__pyx_kp_u_cannot_fetch_from_Variantfile_op); Py_CLEAR(clear_module_state->__pyx_kp_u_cannot_find_metadata_key); Py_CLEAR(clear_module_state->__pyx_kp_u_cannot_iterate_over_Variantfile); Py_CLEAR(clear_module_state->__pyx_kp_u_cannot_set_null_allele); Py_CLEAR(clear_module_state->__pyx_kp_u_cannot_set_null_alt_allele); Py_CLEAR(clear_module_state->__pyx_kp_u_cannot_subset_samples_after_fetc); Py_CLEAR(clear_module_state->__pyx_kp_u_cannot_subset_samples_from_Varia); 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__pyx_mstate_global->__pyx_FusedFunctionType #endif #ifdef __Pyx_Generator_USED #define __pyx_GeneratorType __pyx_mstate_global->__pyx_GeneratorType #endif #ifdef __Pyx_IterableCoroutine_USED #define __pyx_IterableCoroutineType __pyx_mstate_global->__pyx_IterableCoroutineType #endif #ifdef __Pyx_Coroutine_USED #define __pyx_CoroutineAwaitType __pyx_mstate_global->__pyx_CoroutineAwaitType #endif #ifdef __Pyx_Coroutine_USED #define __pyx_CoroutineType __pyx_mstate_global->__pyx_CoroutineType #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #define __pyx_ptype_5pysam_10libchtslib_HTSFile __pyx_mstate_global->__pyx_ptype_5pysam_10libchtslib_HTSFile #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #define __pyx_ptype_7cpython_4type_type __pyx_mstate_global->__pyx_ptype_7cpython_4type_type #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #define __pyx_ptype_7cpython_4bool_bool __pyx_mstate_global->__pyx_ptype_7cpython_4bool_bool #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #define __pyx_ptype_7cpython_7complex_complex __pyx_mstate_global->__pyx_ptype_7cpython_7complex_complex #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #endif #define __pyx_ptype_7cpython_5array_array __pyx_mstate_global->__pyx_ptype_7cpython_5array_array #if CYTHON_USE_MODULE_STATE #endif #if CYTHON_USE_MODULE_STATE #define __pyx_type_5pysam_7libcbcf_VariantHeader __pyx_mstate_global->__pyx_type_5pysam_7libcbcf_VariantHeader #define __pyx_type_5pysam_7libcbcf_VariantHeaderRecord __pyx_mstate_global->__pyx_type_5pysam_7libcbcf_VariantHeaderRecord #define __pyx_type_5pysam_7libcbcf_VariantHeaderRecords __pyx_mstate_global->__pyx_type_5pysam_7libcbcf_VariantHeaderRecords #define __pyx_type_5pysam_7libcbcf_VariantHeaderContigs __pyx_mstate_global->__pyx_type_5pysam_7libcbcf_VariantHeaderContigs #define __pyx_type_5pysam_7libcbcf_VariantHeaderSamples __pyx_mstate_global->__pyx_type_5pysam_7libcbcf_VariantHeaderSamples #define __pyx_type_5pysam_7libcbcf_VariantContig __pyx_mstate_global->__pyx_type_5pysam_7libcbcf_VariantContig #define __pyx_type_5pysam_7libcbcf_VariantMetadata __pyx_mstate_global->__pyx_type_5pysam_7libcbcf_VariantMetadata #define __pyx_type_5pysam_7libcbcf_VariantHeaderMetadata __pyx_mstate_global->__pyx_type_5pysam_7libcbcf_VariantHeaderMetadata #define __pyx_type_5pysam_7libcbcf_VariantRecord __pyx_mstate_global->__pyx_type_5pysam_7libcbcf_VariantRecord #define __pyx_type_5pysam_7libcbcf_VariantRecordFilter __pyx_mstate_global->__pyx_type_5pysam_7libcbcf_VariantRecordFilter #define __pyx_type_5pysam_7libcbcf_VariantRecordFormat __pyx_mstate_global->__pyx_type_5pysam_7libcbcf_VariantRecordFormat #define __pyx_type_5pysam_7libcbcf_VariantRecordInfo __pyx_mstate_global->__pyx_type_5pysam_7libcbcf_VariantRecordInfo #define __pyx_type_5pysam_7libcbcf_VariantRecordSamples __pyx_mstate_global->__pyx_type_5pysam_7libcbcf_VariantRecordSamples #define __pyx_type_5pysam_7libcbcf_VariantRecordSample __pyx_mstate_global->__pyx_type_5pysam_7libcbcf_VariantRecordSample #define __pyx_type_5pysam_7libcbcf_BaseIndex __pyx_mstate_global->__pyx_type_5pysam_7libcbcf_BaseIndex #define __pyx_type_5pysam_7libcbcf_BCFIndex __pyx_mstate_global->__pyx_type_5pysam_7libcbcf_BCFIndex #define __pyx_type_5pysam_7libcbcf_TabixIndex __pyx_mstate_global->__pyx_type_5pysam_7libcbcf_TabixIndex #define __pyx_type_5pysam_7libcbcf_BaseIterator __pyx_mstate_global->__pyx_type_5pysam_7libcbcf_BaseIterator #define __pyx_type_5pysam_7libcbcf_BCFIterator __pyx_mstate_global->__pyx_type_5pysam_7libcbcf_BCFIterator #define __pyx_type_5pysam_7libcbcf_TabixIterator __pyx_mstate_global->__pyx_type_5pysam_7libcbcf_TabixIterator #define __pyx_type_5pysam_7libcbcf_VariantFile __pyx_mstate_global->__pyx_type_5pysam_7libcbcf_VariantFile #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_1_genexpr __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_1_genexpr #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_2_genexpr __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_2_genexpr #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_3_genexpr __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_3_genexpr #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_4_genexpr __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_4_genexpr #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_5___get__ __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_5___get__ #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_6_genexpr __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_6_genexpr #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_7___iter__ __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_7___iter__ #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_8_itervalues __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_8_itervalues #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_9_iteritems __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_9_iteritems #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_10___iter__ __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_10___iter__ #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_11___iter__ __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_11___iter__ #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_12_itervalues __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_12_itervalues #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_13_iteritems __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_13_iteritems #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_14___iter__ __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_14___iter__ #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_15_itervalues __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_15_itervalues #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_16_iteritems __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_16_iteritems #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_17___iter__ __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_17___iter__ #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_18___iter__ __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_18___iter__ #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_19_itervalues __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_19_itervalues #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_20_iteritems __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_20_iteritems #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_21___iter__ __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_21___iter__ #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_22_itervalues __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_22_itervalues #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_23_iteritems __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_23_iteritems #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_24___iter__ __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_24___iter__ #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_25_itervalues __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_25_itervalues #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_26_iteritems __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_26_iteritems #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_27___iter__ __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_27___iter__ #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_28_itervalues __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_28_itervalues #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_29_iteritems __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_29_iteritems #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_30___set__ __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_30___set__ #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_31_genexpr __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_31_genexpr #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_32_genexpr __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_32_genexpr #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_33___iter__ __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_33___iter__ #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_34_itervalues __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_34_itervalues #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_35_iteritems __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_35_iteritems #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_36_itervalues __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_36_itervalues #define __pyx_type_5pysam_7libcbcf___pyx_scope_struct_37_iteritems __pyx_mstate_global->__pyx_type_5pysam_7libcbcf___pyx_scope_struct_37_iteritems #endif #define __pyx_ptype_5pysam_7libcbcf_VariantHeader __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf_VariantHeader #define __pyx_ptype_5pysam_7libcbcf_VariantHeaderRecord __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf_VariantHeaderRecord #define __pyx_ptype_5pysam_7libcbcf_VariantHeaderRecords __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf_VariantHeaderRecords #define __pyx_ptype_5pysam_7libcbcf_VariantHeaderContigs __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf_VariantHeaderContigs #define __pyx_ptype_5pysam_7libcbcf_VariantHeaderSamples __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf_VariantHeaderSamples #define __pyx_ptype_5pysam_7libcbcf_VariantContig __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf_VariantContig #define __pyx_ptype_5pysam_7libcbcf_VariantMetadata __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf_VariantMetadata #define __pyx_ptype_5pysam_7libcbcf_VariantHeaderMetadata __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf_VariantHeaderMetadata #define __pyx_ptype_5pysam_7libcbcf_VariantRecord __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf_VariantRecord #define __pyx_ptype_5pysam_7libcbcf_VariantRecordFilter __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf_VariantRecordFilter #define __pyx_ptype_5pysam_7libcbcf_VariantRecordFormat __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf_VariantRecordFormat #define __pyx_ptype_5pysam_7libcbcf_VariantRecordInfo __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf_VariantRecordInfo #define __pyx_ptype_5pysam_7libcbcf_VariantRecordSamples __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf_VariantRecordSamples #define __pyx_ptype_5pysam_7libcbcf_VariantRecordSample __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf_VariantRecordSample #define __pyx_ptype_5pysam_7libcbcf_BaseIndex __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf_BaseIndex #define __pyx_ptype_5pysam_7libcbcf_BCFIndex __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf_BCFIndex #define __pyx_ptype_5pysam_7libcbcf_TabixIndex __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf_TabixIndex #define __pyx_ptype_5pysam_7libcbcf_BaseIterator __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf_BaseIterator #define __pyx_ptype_5pysam_7libcbcf_BCFIterator __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf_BCFIterator #define __pyx_ptype_5pysam_7libcbcf_TabixIterator __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf_TabixIterator #define __pyx_ptype_5pysam_7libcbcf_VariantFile __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf_VariantFile #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_1_genexpr __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_1_genexpr #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_2_genexpr __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_2_genexpr #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_3_genexpr __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_3_genexpr #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_4_genexpr __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_4_genexpr #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_5___get__ __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_5___get__ #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_6_genexpr __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_6_genexpr #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_7___iter__ __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_7___iter__ #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_8_itervalues __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_8_itervalues #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_9_iteritems __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_9_iteritems #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_10___iter__ __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_10___iter__ #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_11___iter__ __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_11___iter__ #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_12_itervalues __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_12_itervalues #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_13_iteritems __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_13_iteritems #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_14___iter__ __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_14___iter__ #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_15_itervalues __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_15_itervalues #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_16_iteritems __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_16_iteritems #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_17___iter__ __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_17___iter__ #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_18___iter__ __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_18___iter__ #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_19_itervalues __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_19_itervalues #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_20_iteritems __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_20_iteritems #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_21___iter__ __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_21___iter__ #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_22_itervalues __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_22_itervalues #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_23_iteritems __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_23_iteritems #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_24___iter__ __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_24___iter__ #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_25_itervalues __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_25_itervalues #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_26_iteritems __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_26_iteritems #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_27___iter__ __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_27___iter__ #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_28_itervalues __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_28_itervalues #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_29_iteritems __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_29_iteritems #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_30___set__ __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_30___set__ #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_31_genexpr __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_31_genexpr #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_32_genexpr __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_32_genexpr #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_33___iter__ __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_33___iter__ #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_34_itervalues __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_34_itervalues #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_35_iteritems __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_35_iteritems #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_36_itervalues __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_36_itervalues #define __pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_37_iteritems __pyx_mstate_global->__pyx_ptype_5pysam_7libcbcf___pyx_scope_struct_37_iteritems #define __pyx_n_u_A __pyx_mstate_global->__pyx_n_u_A #define __pyx_n_u_ALT __pyx_mstate_global->__pyx_n_u_ALT #define __pyx_n_s_AssertionError __pyx_mstate_global->__pyx_n_s_AssertionError #define __pyx_n_s_BCFIndex __pyx_mstate_global->__pyx_n_s_BCFIndex #define __pyx_n_u_BCFIndex __pyx_mstate_global->__pyx_n_u_BCFIndex #define __pyx_n_s_BCFIndex___reduce_cython __pyx_mstate_global->__pyx_n_s_BCFIndex___reduce_cython #define __pyx_n_s_BCFIndex___setstate_cython __pyx_mstate_global->__pyx_n_s_BCFIndex___setstate_cython #define __pyx_n_s_BCFIndex_fetch __pyx_mstate_global->__pyx_n_s_BCFIndex_fetch #define __pyx_n_s_BCFIterator __pyx_mstate_global->__pyx_n_s_BCFIterator #define __pyx_n_u_BCFIterator __pyx_mstate_global->__pyx_n_u_BCFIterator #define __pyx_n_s_BCFIterator___reduce_cython __pyx_mstate_global->__pyx_n_s_BCFIterator___reduce_cython #define __pyx_n_s_BCFIterator___setstate_cython __pyx_mstate_global->__pyx_n_s_BCFIterator___setstate_cython #define __pyx_n_u_BND __pyx_mstate_global->__pyx_n_u_BND #define __pyx_n_s_BaseIndex __pyx_mstate_global->__pyx_n_s_BaseIndex #define __pyx_n_u_BaseIndex __pyx_mstate_global->__pyx_n_u_BaseIndex #define __pyx_n_s_BaseIndex___reduce_cython __pyx_mstate_global->__pyx_n_s_BaseIndex___reduce_cython #define __pyx_n_s_BaseIndex___setstate_cython __pyx_mstate_global->__pyx_n_s_BaseIndex___setstate_cython #define __pyx_n_s_BaseIndex_get __pyx_mstate_global->__pyx_n_s_BaseIndex_get #define __pyx_n_s_BaseIndex_items __pyx_mstate_global->__pyx_n_s_BaseIndex_items #define __pyx_n_s_BaseIndex_iteritems __pyx_mstate_global->__pyx_n_s_BaseIndex_iteritems #define __pyx_n_s_BaseIndex_iterkeys __pyx_mstate_global->__pyx_n_s_BaseIndex_iterkeys #define __pyx_n_s_BaseIndex_itervalues __pyx_mstate_global->__pyx_n_s_BaseIndex_itervalues #define __pyx_n_s_BaseIndex_keys __pyx_mstate_global->__pyx_n_s_BaseIndex_keys #define __pyx_n_s_BaseIndex_pop __pyx_mstate_global->__pyx_n_s_BaseIndex_pop #define __pyx_n_s_BaseIndex_update __pyx_mstate_global->__pyx_n_s_BaseIndex_update #define __pyx_n_s_BaseIndex_values __pyx_mstate_global->__pyx_n_s_BaseIndex_values #define __pyx_n_s_BaseIterator __pyx_mstate_global->__pyx_n_s_BaseIterator #define __pyx_n_u_BaseIterator __pyx_mstate_global->__pyx_n_u_BaseIterator #define __pyx_n_s_BaseIterator___reduce_cython __pyx_mstate_global->__pyx_n_s_BaseIterator___reduce_cython #define __pyx_n_s_BaseIterator___setstate_cython __pyx_mstate_global->__pyx_n_s_BaseIterator___setstate_cython #define __pyx_n_u_CONTIG __pyx_mstate_global->__pyx_n_u_CONTIG #define __pyx_kp_u_Cannot_add_extra_threads_when_ig __pyx_mstate_global->__pyx_kp_u_Cannot_add_extra_threads_when_ig #define __pyx_kp_u_Cannot_copy_arrays_with_src_valu __pyx_mstate_global->__pyx_kp_u_Cannot_copy_arrays_with_src_valu #define __pyx_kp_u_Cannot_create_empty_array __pyx_mstate_global->__pyx_kp_u_Cannot_create_empty_array #define __pyx_kp_u_Cannot_re_open_htsfile __pyx_mstate_global->__pyx_kp_u_Cannot_re_open_htsfile #define __pyx_kp_u_Cannot_set_phased_before_genotyp __pyx_mstate_global->__pyx_kp_u_Cannot_set_phased_before_genotyp #define __pyx_kp_u_Cannot_specify_an_index_filename __pyx_mstate_global->__pyx_kp_u_Cannot_specify_an_index_filename #define __pyx_kp_u_Cannot_translate_record_Number_o __pyx_mstate_global->__pyx_kp_u_Cannot_translate_record_Number_o #define __pyx_n_u_Description __pyx_mstate_global->__pyx_n_u_Description #define __pyx_kp_u_Duplicated_sample_name __pyx_mstate_global->__pyx_kp_u_Duplicated_sample_name #define __pyx_n_b_END __pyx_mstate_global->__pyx_n_b_END #define __pyx_n_u_END __pyx_mstate_global->__pyx_n_u_END #define __pyx_kp_u_END_is_a_reserved_attribute_acce __pyx_mstate_global->__pyx_kp_u_END_is_a_reserved_attribute_acce #define __pyx_kp_u_Error_extracting_ID __pyx_mstate_global->__pyx_kp_u_Error_extracting_ID #define __pyx_kp_u_Error_s_reading_record __pyx_mstate_global->__pyx_kp_u_Error_s_reading_record #define __pyx_kp_u_Error_unpacking_VariantRecord __pyx_mstate_global->__pyx_kp_u_Error_unpacking_VariantRecord #define __pyx_kp_u_Error_updating_alleles __pyx_mstate_global->__pyx_kp_u_Error_updating_alleles #define __pyx_kp_u_Error_updating_id __pyx_mstate_global->__pyx_kp_u_Error_updating_id #define __pyx_n_u_FILTER __pyx_mstate_global->__pyx_n_u_FILTER #define __pyx_n_u_FIXED __pyx_mstate_global->__pyx_n_u_FIXED #define __pyx_n_u_FORMAT __pyx_mstate_global->__pyx_n_u_FORMAT #define __pyx_n_u_Flag __pyx_mstate_global->__pyx_n_u_Flag #define __pyx_kp_u_Flag_types_are_not_allowed_on_FO __pyx_mstate_global->__pyx_kp_u_Flag_types_are_not_allowed_on_FO #define __pyx_kp_u_Flag_values_must_be_True_False_N __pyx_mstate_global->__pyx_kp_u_Flag_values_must_be_True_False_N #define __pyx_n_u_Float __pyx_mstate_global->__pyx_n_u_Float #define __pyx_n_u_G __pyx_mstate_global->__pyx_n_u_G #define __pyx_n_u_GENERIC __pyx_mstate_global->__pyx_n_u_GENERIC #define __pyx_n_u_GT __pyx_mstate_global->__pyx_n_u_GT #define __pyx_kp_u_Header_already_exists_for_contig __pyx_mstate_global->__pyx_kp_u_Header_already_exists_for_contig #define __pyx_kp_u_Header_already_exists_for_id __pyx_mstate_global->__pyx_kp_u_Header_already_exists_for_id #define __pyx_n_u_ID __pyx_mstate_global->__pyx_n_u_ID #define __pyx_n_u_INDEL __pyx_mstate_global->__pyx_n_u_INDEL #define __pyx_n_u_INFO __pyx_mstate_global->__pyx_n_u_INFO #define __pyx_n_s_IOError __pyx_mstate_global->__pyx_n_s_IOError #define __pyx_kp_u_I_O_operation_on_closed_file __pyx_mstate_global->__pyx_kp_u_I_O_operation_on_closed_file #define __pyx_kp_s_Incompatible_checksums_0x_x_vs_0 __pyx_mstate_global->__pyx_kp_s_Incompatible_checksums_0x_x_vs_0 #define __pyx_kp_s_Incompatible_checksums_0x_x_vs_0_2 __pyx_mstate_global->__pyx_kp_s_Incompatible_checksums_0x_x_vs_0_2 #define __pyx_kp_s_Incompatible_checksums_0x_x_vs_0_3 __pyx_mstate_global->__pyx_kp_s_Incompatible_checksums_0x_x_vs_0_3 #define __pyx_kp_s_Incompatible_checksums_0x_x_vs_0_4 __pyx_mstate_global->__pyx_kp_s_Incompatible_checksums_0x_x_vs_0_4 #define __pyx_kp_s_Incompatible_checksums_0x_x_vs_0_5 __pyx_mstate_global->__pyx_kp_s_Incompatible_checksums_0x_x_vs_0_5 #define __pyx_kp_s_Incompatible_checksums_0x_x_vs_0_6 __pyx_mstate_global->__pyx_kp_s_Incompatible_checksums_0x_x_vs_0_6 #define __pyx_kp_s_Incompatible_checksums_0x_x_vs_0_7 __pyx_mstate_global->__pyx_kp_s_Incompatible_checksums_0x_x_vs_0_7 #define __pyx_n_s_IndexError __pyx_mstate_global->__pyx_n_s_IndexError #define __pyx_n_u_Integer __pyx_mstate_global->__pyx_n_u_Integer #define __pyx_kp_u_Integer_value_too_small_large_to __pyx_mstate_global->__pyx_kp_u_Integer_value_too_small_large_to #define __pyx_kp_u_Invalid_INFO_field __pyx_mstate_global->__pyx_kp_u_Invalid_INFO_field #define __pyx_kp_u_Invalid_VariantRecord_Number_of __pyx_mstate_global->__pyx_kp_u_Invalid_VariantRecord_Number_of #define __pyx_kp_u_Invalid_allele_index __pyx_mstate_global->__pyx_kp_u_Invalid_allele_index #define __pyx_kp_u_Invalid_chromosome_contig __pyx_mstate_global->__pyx_kp_u_Invalid_chromosome_contig #define __pyx_kp_u_Invalid_filter __pyx_mstate_global->__pyx_kp_u_Invalid_filter #define __pyx_kp_u_Invalid_header __pyx_mstate_global->__pyx_kp_u_Invalid_header #define __pyx_kp_u_Invalid_header_id __pyx_mstate_global->__pyx_kp_u_Invalid_header_id #define __pyx_kp_u_Invalid_header_record_index __pyx_mstate_global->__pyx_kp_u_Invalid_header_record_index #define __pyx_kp_u_Invalid_index_object __pyx_mstate_global->__pyx_kp_u_Invalid_index_object #define __pyx_kp_u_Invalid_tid __pyx_mstate_global->__pyx_kp_u_Invalid_tid #define __pyx_n_s_KeyError __pyx_mstate_global->__pyx_n_s_KeyError #define __pyx_n_u_MNP __pyx_mstate_global->__pyx_n_u_MNP #define __pyx_n_s_MemoryError __pyx_mstate_global->__pyx_n_s_MemoryError #define __pyx_kp_u_NON_REF __pyx_mstate_global->__pyx_kp_u_NON_REF #define __pyx_n_s_NotImplemented __pyx_mstate_global->__pyx_n_s_NotImplemented #define __pyx_n_u_Number __pyx_mstate_global->__pyx_n_u_Number #define __pyx_kp_u_Number_must_be_None_when_adding __pyx_mstate_global->__pyx_kp_u_Number_must_be_None_when_adding #define __pyx_n_u_OTHER __pyx_mstate_global->__pyx_n_u_OTHER #define __pyx_n_u_OVERLAP __pyx_mstate_global->__pyx_n_u_OVERLAP #define __pyx_kp_u_One_or_more_of_the_supplied_samp __pyx_mstate_global->__pyx_kp_u_One_or_more_of_the_supplied_samp #define __pyx_n_u_PASS __pyx_mstate_global->__pyx_n_u_PASS #define __pyx_n_s_PickleError __pyx_mstate_global->__pyx_n_s_PickleError #define __pyx_kp_u_Position_must_be_positive __pyx_mstate_global->__pyx_kp_u_Position_must_be_positive #define __pyx_n_u_R __pyx_mstate_global->__pyx_n_u_R #define __pyx_n_u_REF __pyx_mstate_global->__pyx_n_u_REF #define __pyx_n_u_SNP __pyx_mstate_global->__pyx_n_u_SNP #define __pyx_n_u_STRUCTURED __pyx_mstate_global->__pyx_n_u_STRUCTURED #define __pyx_kp_u_Start_coordinate_must_be_non_neg __pyx_mstate_global->__pyx_kp_u_Start_coordinate_must_be_non_neg #define __pyx_n_s_StopIteration __pyx_mstate_global->__pyx_n_s_StopIteration #define __pyx_kp_u_Stop_coordinate_must_be_non_nega __pyx_mstate_global->__pyx_kp_u_Stop_coordinate_must_be_non_nega #define __pyx_kp_u_Stop_position_of_the_interval __pyx_mstate_global->__pyx_kp_u_Stop_position_of_the_interval #define __pyx_n_u_String __pyx_mstate_global->__pyx_n_u_String #define __pyx_n_s_TabixIndex __pyx_mstate_global->__pyx_n_s_TabixIndex #define __pyx_n_u_TabixIndex __pyx_mstate_global->__pyx_n_u_TabixIndex #define __pyx_n_s_TabixIndex___reduce_cython __pyx_mstate_global->__pyx_n_s_TabixIndex___reduce_cython #define __pyx_n_s_TabixIndex___setstate_cython __pyx_mstate_global->__pyx_n_s_TabixIndex___setstate_cython #define __pyx_n_s_TabixIndex_fetch __pyx_mstate_global->__pyx_n_s_TabixIndex_fetch #define __pyx_n_s_TabixIterator __pyx_mstate_global->__pyx_n_s_TabixIterator #define __pyx_n_u_TabixIterator __pyx_mstate_global->__pyx_n_u_TabixIterator #define __pyx_n_s_TabixIterator___reduce_cython __pyx_mstate_global->__pyx_n_s_TabixIterator___reduce_cython #define __pyx_n_s_TabixIterator___setstate_cython __pyx_mstate_global->__pyx_n_s_TabixIterator___setstate_cython #define __pyx_n_u_Type __pyx_mstate_global->__pyx_n_u_Type #define __pyx_n_s_TypeError __pyx_mstate_global->__pyx_n_s_TypeError #define __pyx_kp_u_Type_must_be_None_when_adding_a __pyx_mstate_global->__pyx_kp_u_Type_must_be_None_when_adding_a #define __pyx_kp_u_Unable_to_delete_END __pyx_mstate_global->__pyx_kp_u_Unable_to_delete_END #define __pyx_kp_u_Unable_to_delete_FORMAT __pyx_mstate_global->__pyx_kp_u_Unable_to_delete_FORMAT #define __pyx_kp_u_Unable_to_delete_INFO __pyx_mstate_global->__pyx_kp_u_Unable_to_delete_INFO #define __pyx_kp_u_Unable_to_update_INFO_values __pyx_mstate_global->__pyx_kp_u_Unable_to_update_INFO_values #define __pyx_kp_u_Unable_to_update_format_values __pyx_mstate_global->__pyx_kp_u_Unable_to_update_format_values #define __pyx_kp_u_Unknown_INFO_field __pyx_mstate_global->__pyx_kp_u_Unknown_INFO_field #define __pyx_kp_u_Unknown_allele __pyx_mstate_global->__pyx_kp_u_Unknown_allele #define __pyx_kp_u_Unknown_format_length __pyx_mstate_global->__pyx_kp_u_Unknown_format_length #define __pyx_kp_u_Unsupported_FORMAT_type __pyx_mstate_global->__pyx_kp_u_Unsupported_FORMAT_type #define __pyx_kp_u_Unsupported_INFO_type __pyx_mstate_global->__pyx_kp_u_Unsupported_INFO_type #define __pyx_kp_u_Use_allele_indices_to_set_intege __pyx_mstate_global->__pyx_kp_u_Use_allele_indices_to_set_intege #define __pyx_n_u_VARIABLE __pyx_mstate_global->__pyx_n_u_VARIABLE #define __pyx_n_s_ValueError __pyx_mstate_global->__pyx_n_s_ValueError #define __pyx_n_s_VariantContig __pyx_mstate_global->__pyx_n_s_VariantContig #define __pyx_n_u_VariantContig __pyx_mstate_global->__pyx_n_u_VariantContig #define __pyx_n_s_VariantContig___reduce_cython __pyx_mstate_global->__pyx_n_s_VariantContig___reduce_cython #define __pyx_n_s_VariantContig___setstate_cython __pyx_mstate_global->__pyx_n_s_VariantContig___setstate_cython #define __pyx_n_s_VariantContig_remove_header __pyx_mstate_global->__pyx_n_s_VariantContig_remove_header #define __pyx_n_s_VariantFile __pyx_mstate_global->__pyx_n_s_VariantFile #define __pyx_n_u_VariantFile __pyx_mstate_global->__pyx_n_u_VariantFile #define __pyx_n_s_VariantFile___reduce_cython __pyx_mstate_global->__pyx_n_s_VariantFile___reduce_cython #define __pyx_n_s_VariantFile___setstate_cython __pyx_mstate_global->__pyx_n_s_VariantFile___setstate_cython #define __pyx_n_s_VariantFile_close __pyx_mstate_global->__pyx_n_s_VariantFile_close #define __pyx_n_s_VariantFile_copy __pyx_mstate_global->__pyx_n_s_VariantFile_copy #define __pyx_n_s_VariantFile_fetch __pyx_mstate_global->__pyx_n_s_VariantFile_fetch #define __pyx_n_s_VariantFile_get_reference_name __pyx_mstate_global->__pyx_n_s_VariantFile_get_reference_name #define __pyx_n_s_VariantFile_get_tid __pyx_mstate_global->__pyx_n_s_VariantFile_get_tid #define __pyx_n_s_VariantFile_is_valid_tid __pyx_mstate_global->__pyx_n_s_VariantFile_is_valid_tid #define __pyx_n_s_VariantFile_new_record __pyx_mstate_global->__pyx_n_s_VariantFile_new_record #define __pyx_n_s_VariantFile_open __pyx_mstate_global->__pyx_n_s_VariantFile_open #define __pyx_n_s_VariantFile_reset __pyx_mstate_global->__pyx_n_s_VariantFile_reset #define __pyx_n_s_VariantFile_subset_samples __pyx_mstate_global->__pyx_n_s_VariantFile_subset_samples #define __pyx_n_s_VariantFile_write __pyx_mstate_global->__pyx_n_s_VariantFile_write #define __pyx_n_s_VariantHeader __pyx_mstate_global->__pyx_n_s_VariantHeader #define __pyx_n_u_VariantHeader __pyx_mstate_global->__pyx_n_u_VariantHeader #define __pyx_n_s_VariantHeaderContigs __pyx_mstate_global->__pyx_n_s_VariantHeaderContigs #define __pyx_n_u_VariantHeaderContigs __pyx_mstate_global->__pyx_n_u_VariantHeaderContigs #define __pyx_n_s_VariantHeaderContigs___iter __pyx_mstate_global->__pyx_n_s_VariantHeaderContigs___iter #define __pyx_n_s_VariantHeaderContigs___reduce_cy __pyx_mstate_global->__pyx_n_s_VariantHeaderContigs___reduce_cy #define __pyx_n_s_VariantHeaderContigs___setstate __pyx_mstate_global->__pyx_n_s_VariantHeaderContigs___setstate #define __pyx_n_s_VariantHeaderContigs_add __pyx_mstate_global->__pyx_n_s_VariantHeaderContigs_add #define __pyx_n_s_VariantHeaderContigs_clear_heade __pyx_mstate_global->__pyx_n_s_VariantHeaderContigs_clear_heade #define __pyx_n_s_VariantHeaderContigs_get __pyx_mstate_global->__pyx_n_s_VariantHeaderContigs_get #define __pyx_n_s_VariantHeaderContigs_items __pyx_mstate_global->__pyx_n_s_VariantHeaderContigs_items #define __pyx_n_s_VariantHeaderContigs_iteritems __pyx_mstate_global->__pyx_n_s_VariantHeaderContigs_iteritems #define __pyx_n_s_VariantHeaderContigs_iterkeys __pyx_mstate_global->__pyx_n_s_VariantHeaderContigs_iterkeys #define __pyx_n_s_VariantHeaderContigs_itervalues __pyx_mstate_global->__pyx_n_s_VariantHeaderContigs_itervalues #define __pyx_n_s_VariantHeaderContigs_keys __pyx_mstate_global->__pyx_n_s_VariantHeaderContigs_keys #define __pyx_n_s_VariantHeaderContigs_remove_head __pyx_mstate_global->__pyx_n_s_VariantHeaderContigs_remove_head #define __pyx_n_s_VariantHeaderContigs_values __pyx_mstate_global->__pyx_n_s_VariantHeaderContigs_values #define __pyx_n_s_VariantHeaderMetadata __pyx_mstate_global->__pyx_n_s_VariantHeaderMetadata #define __pyx_n_u_VariantHeaderMetadata __pyx_mstate_global->__pyx_n_u_VariantHeaderMetadata #define __pyx_n_s_VariantHeaderMetadata___iter __pyx_mstate_global->__pyx_n_s_VariantHeaderMetadata___iter #define __pyx_n_s_VariantHeaderMetadata___reduce_c __pyx_mstate_global->__pyx_n_s_VariantHeaderMetadata___reduce_c #define __pyx_n_s_VariantHeaderMetadata___setstate __pyx_mstate_global->__pyx_n_s_VariantHeaderMetadata___setstate #define __pyx_n_s_VariantHeaderMetadata_add __pyx_mstate_global->__pyx_n_s_VariantHeaderMetadata_add #define __pyx_n_s_VariantHeaderMetadata_clear_head __pyx_mstate_global->__pyx_n_s_VariantHeaderMetadata_clear_head #define __pyx_n_s_VariantHeaderMetadata_get __pyx_mstate_global->__pyx_n_s_VariantHeaderMetadata_get #define __pyx_n_s_VariantHeaderMetadata_items __pyx_mstate_global->__pyx_n_s_VariantHeaderMetadata_items #define __pyx_n_s_VariantHeaderMetadata_iteritems __pyx_mstate_global->__pyx_n_s_VariantHeaderMetadata_iteritems #define __pyx_n_s_VariantHeaderMetadata_iterkeys __pyx_mstate_global->__pyx_n_s_VariantHeaderMetadata_iterkeys #define __pyx_n_s_VariantHeaderMetadata_itervalues __pyx_mstate_global->__pyx_n_s_VariantHeaderMetadata_itervalues #define __pyx_n_s_VariantHeaderMetadata_keys __pyx_mstate_global->__pyx_n_s_VariantHeaderMetadata_keys #define __pyx_n_s_VariantHeaderMetadata_remove_hea __pyx_mstate_global->__pyx_n_s_VariantHeaderMetadata_remove_hea #define __pyx_n_s_VariantHeaderMetadata_values __pyx_mstate_global->__pyx_n_s_VariantHeaderMetadata_values #define __pyx_n_s_VariantHeaderRecord __pyx_mstate_global->__pyx_n_s_VariantHeaderRecord #define __pyx_n_u_VariantHeaderRecord __pyx_mstate_global->__pyx_n_u_VariantHeaderRecord #define __pyx_n_s_VariantHeaderRecord___get___loca __pyx_mstate_global->__pyx_n_s_VariantHeaderRecord___get___loca #define __pyx_n_s_VariantHeaderRecord___iter __pyx_mstate_global->__pyx_n_s_VariantHeaderRecord___iter #define __pyx_n_s_VariantHeaderRecord___reduce_cyt __pyx_mstate_global->__pyx_n_s_VariantHeaderRecord___reduce_cyt #define __pyx_n_s_VariantHeaderRecord___setstate_c __pyx_mstate_global->__pyx_n_s_VariantHeaderRecord___setstate_c #define __pyx_n_s_VariantHeaderRecord_get __pyx_mstate_global->__pyx_n_s_VariantHeaderRecord_get #define __pyx_n_s_VariantHeaderRecord_items __pyx_mstate_global->__pyx_n_s_VariantHeaderRecord_items #define __pyx_n_s_VariantHeaderRecord_iteritems __pyx_mstate_global->__pyx_n_s_VariantHeaderRecord_iteritems #define __pyx_n_s_VariantHeaderRecord_iterkeys __pyx_mstate_global->__pyx_n_s_VariantHeaderRecord_iterkeys #define __pyx_n_s_VariantHeaderRecord_itervalues __pyx_mstate_global->__pyx_n_s_VariantHeaderRecord_itervalues #define __pyx_n_s_VariantHeaderRecord_keys __pyx_mstate_global->__pyx_n_s_VariantHeaderRecord_keys #define __pyx_n_s_VariantHeaderRecord_pop __pyx_mstate_global->__pyx_n_s_VariantHeaderRecord_pop #define __pyx_n_s_VariantHeaderRecord_remove __pyx_mstate_global->__pyx_n_s_VariantHeaderRecord_remove #define __pyx_n_s_VariantHeaderRecord_update __pyx_mstate_global->__pyx_n_s_VariantHeaderRecord_update #define __pyx_n_s_VariantHeaderRecord_values __pyx_mstate_global->__pyx_n_s_VariantHeaderRecord_values #define __pyx_n_s_VariantHeaderRecords __pyx_mstate_global->__pyx_n_s_VariantHeaderRecords #define __pyx_n_u_VariantHeaderRecords __pyx_mstate_global->__pyx_n_u_VariantHeaderRecords #define __pyx_n_s_VariantHeaderRecords___iter __pyx_mstate_global->__pyx_n_s_VariantHeaderRecords___iter #define __pyx_n_s_VariantHeaderRecords___reduce_cy __pyx_mstate_global->__pyx_n_s_VariantHeaderRecords___reduce_cy #define __pyx_n_s_VariantHeaderRecords___setstate __pyx_mstate_global->__pyx_n_s_VariantHeaderRecords___setstate #define __pyx_n_s_VariantHeaderSamples __pyx_mstate_global->__pyx_n_s_VariantHeaderSamples #define __pyx_n_u_VariantHeaderSamples __pyx_mstate_global->__pyx_n_u_VariantHeaderSamples #define __pyx_n_s_VariantHeaderSamples___iter __pyx_mstate_global->__pyx_n_s_VariantHeaderSamples___iter #define __pyx_n_s_VariantHeaderSamples___reduce_cy __pyx_mstate_global->__pyx_n_s_VariantHeaderSamples___reduce_cy #define __pyx_n_s_VariantHeaderSamples___setstate __pyx_mstate_global->__pyx_n_s_VariantHeaderSamples___setstate #define __pyx_n_s_VariantHeaderSamples_add __pyx_mstate_global->__pyx_n_s_VariantHeaderSamples_add #define __pyx_n_s_VariantHeader___reduce_cython __pyx_mstate_global->__pyx_n_s_VariantHeader___reduce_cython #define __pyx_n_s_VariantHeader___setstate_cython __pyx_mstate_global->__pyx_n_s_VariantHeader___setstate_cython #define __pyx_n_s_VariantHeader_add_line __pyx_mstate_global->__pyx_n_s_VariantHeader_add_line #define __pyx_n_s_VariantHeader_add_meta __pyx_mstate_global->__pyx_n_s_VariantHeader_add_meta #define __pyx_n_s_VariantHeader_add_record __pyx_mstate_global->__pyx_n_s_VariantHeader_add_record #define __pyx_n_s_VariantHeader_add_sample __pyx_mstate_global->__pyx_n_s_VariantHeader_add_sample #define __pyx_n_s_VariantHeader_add_samples __pyx_mstate_global->__pyx_n_s_VariantHeader_add_samples #define __pyx_n_s_VariantHeader_copy __pyx_mstate_global->__pyx_n_s_VariantHeader_copy #define __pyx_n_s_VariantHeader_merge __pyx_mstate_global->__pyx_n_s_VariantHeader_merge #define __pyx_n_s_VariantHeader_new_record __pyx_mstate_global->__pyx_n_s_VariantHeader_new_record #define __pyx_n_s_VariantMetadata __pyx_mstate_global->__pyx_n_s_VariantMetadata #define __pyx_n_u_VariantMetadata __pyx_mstate_global->__pyx_n_u_VariantMetadata #define __pyx_n_s_VariantMetadata___reduce_cython __pyx_mstate_global->__pyx_n_s_VariantMetadata___reduce_cython #define __pyx_n_s_VariantMetadata___setstate_cytho __pyx_mstate_global->__pyx_n_s_VariantMetadata___setstate_cytho #define __pyx_n_s_VariantMetadata_remove_header __pyx_mstate_global->__pyx_n_s_VariantMetadata_remove_header #define __pyx_n_s_VariantRecord __pyx_mstate_global->__pyx_n_s_VariantRecord #define __pyx_n_u_VariantRecord __pyx_mstate_global->__pyx_n_u_VariantRecord #define __pyx_n_s_VariantRecordFilter __pyx_mstate_global->__pyx_n_s_VariantRecordFilter #define __pyx_n_u_VariantRecordFilter __pyx_mstate_global->__pyx_n_u_VariantRecordFilter #define __pyx_n_s_VariantRecordFilter___iter __pyx_mstate_global->__pyx_n_s_VariantRecordFilter___iter #define __pyx_n_s_VariantRecordFilter___reduce_cyt __pyx_mstate_global->__pyx_n_s_VariantRecordFilter___reduce_cyt #define __pyx_n_s_VariantRecordFilter___setstate_c __pyx_mstate_global->__pyx_n_s_VariantRecordFilter___setstate_c #define __pyx_n_s_VariantRecordFilter_add __pyx_mstate_global->__pyx_n_s_VariantRecordFilter_add #define __pyx_n_s_VariantRecordFilter_clear __pyx_mstate_global->__pyx_n_s_VariantRecordFilter_clear #define __pyx_n_s_VariantRecordFilter_get __pyx_mstate_global->__pyx_n_s_VariantRecordFilter_get #define __pyx_n_s_VariantRecordFilter_items __pyx_mstate_global->__pyx_n_s_VariantRecordFilter_items #define __pyx_n_s_VariantRecordFilter_iteritems __pyx_mstate_global->__pyx_n_s_VariantRecordFilter_iteritems #define __pyx_n_s_VariantRecordFilter_iterkeys __pyx_mstate_global->__pyx_n_s_VariantRecordFilter_iterkeys #define __pyx_n_s_VariantRecordFilter_itervalues __pyx_mstate_global->__pyx_n_s_VariantRecordFilter_itervalues #define __pyx_n_s_VariantRecordFilter_keys __pyx_mstate_global->__pyx_n_s_VariantRecordFilter_keys #define __pyx_n_s_VariantRecordFilter_values __pyx_mstate_global->__pyx_n_s_VariantRecordFilter_values #define __pyx_n_s_VariantRecordFormat __pyx_mstate_global->__pyx_n_s_VariantRecordFormat #define __pyx_n_u_VariantRecordFormat __pyx_mstate_global->__pyx_n_u_VariantRecordFormat #define __pyx_n_s_VariantRecordFormat___iter __pyx_mstate_global->__pyx_n_s_VariantRecordFormat___iter #define __pyx_n_s_VariantRecordFormat___reduce_cyt __pyx_mstate_global->__pyx_n_s_VariantRecordFormat___reduce_cyt #define __pyx_n_s_VariantRecordFormat___setstate_c __pyx_mstate_global->__pyx_n_s_VariantRecordFormat___setstate_c #define __pyx_n_s_VariantRecordFormat_clear __pyx_mstate_global->__pyx_n_s_VariantRecordFormat_clear #define __pyx_n_s_VariantRecordFormat_get __pyx_mstate_global->__pyx_n_s_VariantRecordFormat_get #define __pyx_n_s_VariantRecordFormat_items __pyx_mstate_global->__pyx_n_s_VariantRecordFormat_items #define __pyx_n_s_VariantRecordFormat_iteritems __pyx_mstate_global->__pyx_n_s_VariantRecordFormat_iteritems #define __pyx_n_s_VariantRecordFormat_iterkeys __pyx_mstate_global->__pyx_n_s_VariantRecordFormat_iterkeys #define __pyx_n_s_VariantRecordFormat_itervalues __pyx_mstate_global->__pyx_n_s_VariantRecordFormat_itervalues #define __pyx_n_s_VariantRecordFormat_keys __pyx_mstate_global->__pyx_n_s_VariantRecordFormat_keys #define __pyx_n_s_VariantRecordFormat_values __pyx_mstate_global->__pyx_n_s_VariantRecordFormat_values #define __pyx_n_s_VariantRecordInfo __pyx_mstate_global->__pyx_n_s_VariantRecordInfo #define __pyx_n_u_VariantRecordInfo __pyx_mstate_global->__pyx_n_u_VariantRecordInfo #define __pyx_n_s_VariantRecordInfo___iter __pyx_mstate_global->__pyx_n_s_VariantRecordInfo___iter #define __pyx_n_s_VariantRecordInfo___reduce_cytho __pyx_mstate_global->__pyx_n_s_VariantRecordInfo___reduce_cytho #define __pyx_n_s_VariantRecordInfo___setstate_cyt __pyx_mstate_global->__pyx_n_s_VariantRecordInfo___setstate_cyt #define __pyx_n_s_VariantRecordInfo_clear __pyx_mstate_global->__pyx_n_s_VariantRecordInfo_clear #define __pyx_n_s_VariantRecordInfo_get __pyx_mstate_global->__pyx_n_s_VariantRecordInfo_get #define __pyx_n_s_VariantRecordInfo_items __pyx_mstate_global->__pyx_n_s_VariantRecordInfo_items #define __pyx_n_s_VariantRecordInfo_iteritems __pyx_mstate_global->__pyx_n_s_VariantRecordInfo_iteritems #define __pyx_n_s_VariantRecordInfo_iterkeys __pyx_mstate_global->__pyx_n_s_VariantRecordInfo_iterkeys #define __pyx_n_s_VariantRecordInfo_itervalues __pyx_mstate_global->__pyx_n_s_VariantRecordInfo_itervalues #define __pyx_n_s_VariantRecordInfo_keys __pyx_mstate_global->__pyx_n_s_VariantRecordInfo_keys #define __pyx_n_s_VariantRecordInfo_pop __pyx_mstate_global->__pyx_n_s_VariantRecordInfo_pop #define __pyx_n_s_VariantRecordInfo_update __pyx_mstate_global->__pyx_n_s_VariantRecordInfo_update #define __pyx_n_s_VariantRecordInfo_values __pyx_mstate_global->__pyx_n_s_VariantRecordInfo_values #define __pyx_n_s_VariantRecordSample __pyx_mstate_global->__pyx_n_s_VariantRecordSample #define __pyx_n_u_VariantRecordSample __pyx_mstate_global->__pyx_n_u_VariantRecordSample #define __pyx_n_s_VariantRecordSample___iter __pyx_mstate_global->__pyx_n_s_VariantRecordSample___iter #define __pyx_n_s_VariantRecordSample___reduce_cyt __pyx_mstate_global->__pyx_n_s_VariantRecordSample___reduce_cyt #define __pyx_n_s_VariantRecordSample___set___loca __pyx_mstate_global->__pyx_n_s_VariantRecordSample___set___loca #define __pyx_n_s_VariantRecordSample___setstate_c __pyx_mstate_global->__pyx_n_s_VariantRecordSample___setstate_c #define __pyx_n_s_VariantRecordSample_clear __pyx_mstate_global->__pyx_n_s_VariantRecordSample_clear #define __pyx_n_s_VariantRecordSample_get __pyx_mstate_global->__pyx_n_s_VariantRecordSample_get #define __pyx_n_s_VariantRecordSample_items __pyx_mstate_global->__pyx_n_s_VariantRecordSample_items #define __pyx_n_s_VariantRecordSample_iteritems __pyx_mstate_global->__pyx_n_s_VariantRecordSample_iteritems #define __pyx_n_s_VariantRecordSample_iterkeys __pyx_mstate_global->__pyx_n_s_VariantRecordSample_iterkeys #define __pyx_n_s_VariantRecordSample_itervalues __pyx_mstate_global->__pyx_n_s_VariantRecordSample_itervalues #define __pyx_n_s_VariantRecordSample_keys __pyx_mstate_global->__pyx_n_s_VariantRecordSample_keys #define __pyx_n_s_VariantRecordSample_pop __pyx_mstate_global->__pyx_n_s_VariantRecordSample_pop #define __pyx_n_s_VariantRecordSample_update __pyx_mstate_global->__pyx_n_s_VariantRecordSample_update #define __pyx_n_s_VariantRecordSample_values __pyx_mstate_global->__pyx_n_s_VariantRecordSample_values #define __pyx_n_s_VariantRecordSamples __pyx_mstate_global->__pyx_n_s_VariantRecordSamples #define __pyx_n_u_VariantRecordSamples __pyx_mstate_global->__pyx_n_u_VariantRecordSamples #define __pyx_n_s_VariantRecordSamples___iter __pyx_mstate_global->__pyx_n_s_VariantRecordSamples___iter #define __pyx_n_s_VariantRecordSamples___reduce_cy __pyx_mstate_global->__pyx_n_s_VariantRecordSamples___reduce_cy #define __pyx_n_s_VariantRecordSamples___setstate __pyx_mstate_global->__pyx_n_s_VariantRecordSamples___setstate #define __pyx_n_s_VariantRecordSamples_get __pyx_mstate_global->__pyx_n_s_VariantRecordSamples_get #define __pyx_n_s_VariantRecordSamples_items __pyx_mstate_global->__pyx_n_s_VariantRecordSamples_items #define __pyx_n_s_VariantRecordSamples_iteritems __pyx_mstate_global->__pyx_n_s_VariantRecordSamples_iteritems #define __pyx_n_s_VariantRecordSamples_iterkeys __pyx_mstate_global->__pyx_n_s_VariantRecordSamples_iterkeys #define __pyx_n_s_VariantRecordSamples_itervalues __pyx_mstate_global->__pyx_n_s_VariantRecordSamples_itervalues #define __pyx_n_s_VariantRecordSamples_keys __pyx_mstate_global->__pyx_n_s_VariantRecordSamples_keys #define __pyx_n_s_VariantRecordSamples_pop __pyx_mstate_global->__pyx_n_s_VariantRecordSamples_pop #define __pyx_n_s_VariantRecordSamples_update __pyx_mstate_global->__pyx_n_s_VariantRecordSamples_update #define __pyx_n_s_VariantRecordSamples_values __pyx_mstate_global->__pyx_n_s_VariantRecordSamples_values #define __pyx_n_s_VariantRecord___reduce_cython __pyx_mstate_global->__pyx_n_s_VariantRecord___reduce_cython #define __pyx_n_s_VariantRecord___setstate_cython __pyx_mstate_global->__pyx_n_s_VariantRecord___setstate_cython #define __pyx_n_s_VariantRecord_copy __pyx_mstate_global->__pyx_n_s_VariantRecord_copy #define __pyx_n_s_VariantRecord_translate __pyx_mstate_global->__pyx_n_s_VariantRecord_translate #define __pyx_kp_b__12 __pyx_mstate_global->__pyx_kp_b__12 #define __pyx_kp_u__12 __pyx_mstate_global->__pyx_kp_u__12 #define __pyx_kp_u__181 __pyx_mstate_global->__pyx_kp_u__181 #define __pyx_kp_b__2 __pyx_mstate_global->__pyx_kp_b__2 #define __pyx_kp_u__2 __pyx_mstate_global->__pyx_kp_u__2 #define __pyx_kp_b__241 __pyx_mstate_global->__pyx_kp_b__241 #define __pyx_n_s__278 __pyx_mstate_global->__pyx_n_s__278 #define __pyx_n_s__323 __pyx_mstate_global->__pyx_n_s__323 #define __pyx_n_s__330 __pyx_mstate_global->__pyx_n_s__330 #define __pyx_kp_b__52 __pyx_mstate_global->__pyx_kp_b__52 #define __pyx_kp_u__52 __pyx_mstate_global->__pyx_kp_u__52 #define __pyx_kp_u__53 __pyx_mstate_global->__pyx_kp_u__53 #define __pyx_n_s_add __pyx_mstate_global->__pyx_n_s_add #define __pyx_n_s_add_line __pyx_mstate_global->__pyx_n_s_add_line #define __pyx_n_s_add_meta __pyx_mstate_global->__pyx_n_s_add_meta #define __pyx_n_s_add_record __pyx_mstate_global->__pyx_n_s_add_record #define __pyx_n_s_add_sample __pyx_mstate_global->__pyx_n_s_add_sample #define __pyx_n_s_add_samples __pyx_mstate_global->__pyx_n_s_add_samples #define __pyx_n_s_all __pyx_mstate_global->__pyx_n_s_all #define __pyx_n_s_alleles __pyx_mstate_global->__pyx_n_s_alleles #define __pyx_n_s_append __pyx_mstate_global->__pyx_n_s_append #define __pyx_n_s_arg __pyx_mstate_global->__pyx_n_s_arg #define __pyx_n_s_args __pyx_mstate_global->__pyx_n_s_args #define __pyx_n_s_asyncio_coroutines __pyx_mstate_global->__pyx_n_s_asyncio_coroutines #define __pyx_n_s_bcf __pyx_mstate_global->__pyx_n_s_bcf #define __pyx_kp_u_bcf_2 __pyx_mstate_global->__pyx_kp_u_bcf_2 #define __pyx_n_s_bcf_array_to_object_locals_genex __pyx_mstate_global->__pyx_n_s_bcf_array_to_object_locals_genex #define __pyx_n_s_bcf_check_values_locals_genexpr __pyx_mstate_global->__pyx_n_s_bcf_check_values_locals_genexpr #define __pyx_kp_u_bcf_hdr_format_failed __pyx_mstate_global->__pyx_kp_u_bcf_hdr_format_failed #define __pyx_kp_u_bcf_hdr_set_samples_failed_ret __pyx_mstate_global->__pyx_kp_u_bcf_hdr_set_samples_failed_ret #define __pyx_kp_u_bcf_index_required __pyx_mstate_global->__pyx_kp_u_bcf_index_required #define __pyx_kp_u_bcf_must_not_be_None __pyx_mstate_global->__pyx_kp_u_bcf_must_not_be_None #define __pyx_n_s_bcf_object_to_array_locals_genex __pyx_mstate_global->__pyx_n_s_bcf_object_to_array_locals_genex #define __pyx_n_u_bcguz __pyx_mstate_global->__pyx_n_u_bcguz #define __pyx_n_u_bcguz0123456789ex __pyx_mstate_global->__pyx_n_u_bcguz0123456789ex #define __pyx_n_s_bgzfp __pyx_mstate_global->__pyx_n_s_bgzfp #define __pyx_n_s_bkey __pyx_mstate_global->__pyx_n_s_bkey #define __pyx_n_s_bline __pyx_mstate_global->__pyx_n_s_bline #define __pyx_kp_u_cannot_convert_deleted_record_to __pyx_mstate_global->__pyx_kp_u_cannot_convert_deleted_record_to #define __pyx_kp_u_cannot_create_VariantHeader __pyx_mstate_global->__pyx_kp_u_cannot_create_VariantHeader #define __pyx_kp_u_cannot_create_VariantRecord __pyx_mstate_global->__pyx_kp_u_cannot_create_VariantRecord #define __pyx_kp_u_cannot_create_VariantRecordSampl __pyx_mstate_global->__pyx_kp_u_cannot_create_VariantRecordSampl #define __pyx_kp_u_cannot_fetch_from_Variantfile_op __pyx_mstate_global->__pyx_kp_u_cannot_fetch_from_Variantfile_op #define __pyx_kp_u_cannot_find_metadata_key __pyx_mstate_global->__pyx_kp_u_cannot_find_metadata_key #define __pyx_kp_u_cannot_iterate_over_Variantfile __pyx_mstate_global->__pyx_kp_u_cannot_iterate_over_Variantfile #define __pyx_kp_u_cannot_set_null_allele __pyx_mstate_global->__pyx_kp_u_cannot_set_null_allele #define __pyx_kp_u_cannot_set_null_alt_allele __pyx_mstate_global->__pyx_kp_u_cannot_set_null_alt_allele #define __pyx_kp_u_cannot_subset_samples_after_fetc __pyx_mstate_global->__pyx_kp_u_cannot_subset_samples_after_fetc #define __pyx_kp_u_cannot_subset_samples_from_Varia __pyx_mstate_global->__pyx_kp_u_cannot_subset_samples_from_Varia #define __pyx_kp_u_cannot_write_to_a_Variantfile_op __pyx_mstate_global->__pyx_kp_u_cannot_write_to_a_Variantfile_op #define __pyx_n_s_cfilename __pyx_mstate_global->__pyx_n_s_cfilename #define __pyx_n_s_char_array_to_tuple_locals_genex __pyx_mstate_global->__pyx_n_s_char_array_to_tuple_locals_genex #define __pyx_n_s_check_truncation __pyx_mstate_global->__pyx_n_s_check_truncation #define __pyx_n_s_chr __pyx_mstate_global->__pyx_n_s_chr #define __pyx_n_s_cindex_filename __pyx_mstate_global->__pyx_n_s_cindex_filename #define __pyx_n_s_ckey __pyx_mstate_global->__pyx_n_s_ckey #define __pyx_n_s_class_getitem __pyx_mstate_global->__pyx_n_s_class_getitem #define __pyx_n_s_clear __pyx_mstate_global->__pyx_n_s_clear #define __pyx_n_s_clear_header __pyx_mstate_global->__pyx_n_s_clear_header #define __pyx_n_s_cline_in_traceback __pyx_mstate_global->__pyx_n_s_cline_in_traceback #define __pyx_n_s_close __pyx_mstate_global->__pyx_n_s_close #define __pyx_n_s_cmode __pyx_mstate_global->__pyx_n_s_cmode #define __pyx_n_s_contig __pyx_mstate_global->__pyx_n_s_contig #define __pyx_n_u_contig __pyx_mstate_global->__pyx_n_u_contig #define __pyx_kp_u_contig_must_be_specified __pyx_mstate_global->__pyx_kp_u_contig_must_be_specified #define __pyx_n_s_copy __pyx_mstate_global->__pyx_n_s_copy #define __pyx_kp_u_could_not_open_file_mode __pyx_mstate_global->__pyx_kp_u_could_not_open_file_mode #define __pyx_kp_u_could_not_open_variant_file __pyx_mstate_global->__pyx_kp_u_could_not_open_variant_file #define __pyx_kp_u_could_not_open_variant_file_2 __pyx_mstate_global->__pyx_kp_u_could_not_open_variant_file_2 #define __pyx_n_s_d __pyx_mstate_global->__pyx_n_s_d #define __pyx_n_s_default __pyx_mstate_global->__pyx_n_s_default #define __pyx_n_s_description __pyx_mstate_global->__pyx_n_s_description #define __pyx_n_s_dict __pyx_mstate_global->__pyx_n_s_dict #define __pyx_n_s_dict_2 __pyx_mstate_global->__pyx_n_s_dict_2 #define __pyx_kp_u_disable __pyx_mstate_global->__pyx_kp_u_disable #define __pyx_n_s_drop_samples __pyx_mstate_global->__pyx_n_s_drop_samples #define __pyx_n_s_dst_hdr __pyx_mstate_global->__pyx_n_s_dst_hdr #define __pyx_n_s_dst_header __pyx_mstate_global->__pyx_n_s_dst_header #define __pyx_kp_u_dst_header_must_not_be_None __pyx_mstate_global->__pyx_kp_u_dst_header_must_not_be_None #define __pyx_n_s_duplicate_filehandle __pyx_mstate_global->__pyx_n_s_duplicate_filehandle #define __pyx_kp_u_either_value_or_items_must_be_sp __pyx_mstate_global->__pyx_kp_u_either_value_or_items_must_be_sp #define __pyx_kp_u_enable __pyx_mstate_global->__pyx_kp_u_enable #define __pyx_n_s_end __pyx_mstate_global->__pyx_n_s_end #define __pyx_n_s_endswith __pyx_mstate_global->__pyx_n_s_endswith #define __pyx_n_s_enumerate __pyx_mstate_global->__pyx_n_s_enumerate #define __pyx_kp_u_error_in_bcf_subset_format __pyx_mstate_global->__pyx_kp_u_error_in_bcf_subset_format #define __pyx_kp_u_error_in_vcf_parse __pyx_mstate_global->__pyx_kp_u_error_in_vcf_parse #define __pyx_n_s_f __pyx_mstate_global->__pyx_n_s_f #define __pyx_n_s_fetch __pyx_mstate_global->__pyx_n_s_fetch #define __pyx_kp_u_fetch_requires_an_index __pyx_mstate_global->__pyx_kp_u_fetch_requires_an_index #define __pyx_kp_u_file_does_not_have_valid_header __pyx_mstate_global->__pyx_kp_u_file_does_not_have_valid_header #define __pyx_n_s_filename __pyx_mstate_global->__pyx_n_s_filename #define __pyx_n_s_filter __pyx_mstate_global->__pyx_n_s_filter #define __pyx_n_s_fmt __pyx_mstate_global->__pyx_n_s_fmt #define __pyx_n_s_format __pyx_mstate_global->__pyx_n_s_format #define __pyx_n_s_format_modes __pyx_mstate_global->__pyx_n_s_format_modes #define __pyx_kp_u_gc __pyx_mstate_global->__pyx_kp_u_gc #define __pyx_n_s_genexpr __pyx_mstate_global->__pyx_n_s_genexpr #define __pyx_kp_u_genotype_is_only_valid_as_a_form __pyx_mstate_global->__pyx_kp_u_genotype_is_only_valid_as_a_form #define __pyx_n_s_get __pyx_mstate_global->__pyx_n_s_get #define __pyx_n_s_get_reference_name __pyx_mstate_global->__pyx_n_s_get_reference_name #define __pyx_n_s_get_tid __pyx_mstate_global->__pyx_n_s_get_tid #define __pyx_n_s_getstate __pyx_mstate_global->__pyx_n_s_getstate #define __pyx_kp_u_gz __pyx_mstate_global->__pyx_kp_u_gz #define __pyx_n_s_hash __pyx_mstate_global->__pyx_n_s_hash #define __pyx_n_s_hdr __pyx_mstate_global->__pyx_n_s_hdr #define __pyx_n_s_header __pyx_mstate_global->__pyx_n_s_header #define __pyx_kp_u_header_must_not_be_None __pyx_mstate_global->__pyx_kp_u_header_must_not_be_None #define __pyx_n_s_hrec __pyx_mstate_global->__pyx_n_s_hrec #define __pyx_n_s_i __pyx_mstate_global->__pyx_n_s_i #define __pyx_n_s_id __pyx_mstate_global->__pyx_n_s_id #define __pyx_n_s_idx __pyx_mstate_global->__pyx_n_s_idx #define __pyx_n_s_ignore_truncation __pyx_mstate_global->__pyx_n_s_ignore_truncation #define __pyx_n_s_import __pyx_mstate_global->__pyx_n_s_import #define __pyx_n_s_include_samples __pyx_mstate_global->__pyx_n_s_include_samples #define __pyx_n_s_index __pyx_mstate_global->__pyx_n_s_index #define __pyx_n_s_index_filename __pyx_mstate_global->__pyx_n_s_index_filename #define __pyx_n_s_info __pyx_mstate_global->__pyx_n_s_info #define __pyx_n_s_info_id __pyx_mstate_global->__pyx_n_s_info_id #define __pyx_n_s_init __pyx_mstate_global->__pyx_n_s_init #define __pyx_n_s_initializing __pyx_mstate_global->__pyx_n_s_initializing #define __pyx_kp_u_invalid_FORMAT __pyx_mstate_global->__pyx_kp_u_invalid_FORMAT #define __pyx_kp_u_invalid_VariantHeader __pyx_mstate_global->__pyx_kp_u_invalid_VariantHeader #define __pyx_kp_u_invalid_VariantRecord __pyx_mstate_global->__pyx_kp_u_invalid_VariantRecord #define __pyx_kp_u_invalid_character_found __pyx_mstate_global->__pyx_kp_u_invalid_character_found #define __pyx_kp_u_invalid_contig __pyx_mstate_global->__pyx_kp_u_invalid_contig #define __pyx_kp_u_invalid_contig_2 __pyx_mstate_global->__pyx_kp_u_invalid_contig_2 #define __pyx_kp_u_invalid_contig_id __pyx_mstate_global->__pyx_kp_u_invalid_contig_id #define __pyx_kp_u_invalid_contig_index __pyx_mstate_global->__pyx_kp_u_invalid_contig_index #define __pyx_kp_u_invalid_file_mode_is_it_VCF_BCF __pyx_mstate_global->__pyx_kp_u_invalid_file_mode_is_it_VCF_BCF #define __pyx_kp_u_invalid_filter_index __pyx_mstate_global->__pyx_kp_u_invalid_filter_index #define __pyx_kp_u_invalid_header_line __pyx_mstate_global->__pyx_kp_u_invalid_header_line #define __pyx_kp_u_invalid_header_record_index __pyx_mstate_global->__pyx_kp_u_invalid_header_record_index #define __pyx_kp_u_invalid_key __pyx_mstate_global->__pyx_kp_u_invalid_key #define __pyx_kp_u_invalid_metadata_id __pyx_mstate_global->__pyx_kp_u_invalid_metadata_id #define __pyx_kp_u_invalid_metadata_type __pyx_mstate_global->__pyx_kp_u_invalid_metadata_type #define __pyx_kp_u_invalid_mode_options __pyx_mstate_global->__pyx_kp_u_invalid_mode_options #define __pyx_n_s_invalid_modes __pyx_mstate_global->__pyx_n_s_invalid_modes #define __pyx_kp_u_invalid_number_of_columns __pyx_mstate_global->__pyx_kp_u_invalid_number_of_columns #define __pyx_kp_u_invalid_reference_id __pyx_mstate_global->__pyx_kp_u_invalid_reference_id #define __pyx_kp_u_invalid_sample_index __pyx_mstate_global->__pyx_kp_u_invalid_sample_index #define __pyx_kp_u_invalid_sample_name __pyx_mstate_global->__pyx_kp_u_invalid_sample_name #define __pyx_kp_u_invalid_tag __pyx_mstate_global->__pyx_kp_u_invalid_tag #define __pyx_kp_u_invalid_value_for_Float_format __pyx_mstate_global->__pyx_kp_u_invalid_value_for_Float_format #define __pyx_kp_u_invalid_value_for_Integer_format __pyx_mstate_global->__pyx_kp_u_invalid_value_for_Integer_format #define __pyx_n_s_is_coroutine __pyx_mstate_global->__pyx_n_s_is_coroutine #define __pyx_n_s_is_open __pyx_mstate_global->__pyx_n_s_is_open #define __pyx_n_s_is_valid_tid __pyx_mstate_global->__pyx_n_s_is_valid_tid #define __pyx_kp_u_isenabled __pyx_mstate_global->__pyx_kp_u_isenabled #define __pyx_n_s_items __pyx_mstate_global->__pyx_n_s_items #define __pyx_n_s_iter __pyx_mstate_global->__pyx_n_s_iter #define __pyx_n_s_iteritems __pyx_mstate_global->__pyx_n_s_iteritems #define __pyx_n_s_iterkeys __pyx_mstate_global->__pyx_n_s_iterkeys #define __pyx_n_s_itervalues __pyx_mstate_global->__pyx_n_s_itervalues #define __pyx_n_s_join __pyx_mstate_global->__pyx_n_s_join #define __pyx_n_s_k __pyx_mstate_global->__pyx_n_s_k #define __pyx_n_s_key __pyx_mstate_global->__pyx_n_s_key #define __pyx_n_s_keys __pyx_mstate_global->__pyx_n_s_keys #define __pyx_n_s_kwargs __pyx_mstate_global->__pyx_n_s_kwargs #define __pyx_n_s_length __pyx_mstate_global->__pyx_n_s_length #define __pyx_n_u_length __pyx_mstate_global->__pyx_n_u_length #define __pyx_kp_u_limits_violated __pyx_mstate_global->__pyx_kp_u_limits_violated #define __pyx_n_s_line __pyx_mstate_global->__pyx_n_s_line #define __pyx_n_s_m __pyx_mstate_global->__pyx_n_s_m #define __pyx_n_s_main __pyx_mstate_global->__pyx_n_s_main #define __pyx_n_s_merge __pyx_mstate_global->__pyx_n_s_merge #define __pyx_kp_u_missing_d_requested_samples __pyx_mstate_global->__pyx_kp_u_missing_d_requested_samples #define __pyx_n_s_mode __pyx_mstate_global->__pyx_n_s_mode #define __pyx_kp_u_mode_contains_conflicting_format __pyx_mstate_global->__pyx_kp_u_mode_contains_conflicting_format #define __pyx_kp_u_mode_must_begin_with_r_w_or_a __pyx_mstate_global->__pyx_kp_u_mode_must_begin_with_r_w_or_a #define __pyx_n_s_msg __pyx_mstate_global->__pyx_n_s_msg #define __pyx_kp_u_must_set_at_least_2_alleles __pyx_mstate_global->__pyx_kp_u_must_set_at_least_2_alleles #define __pyx_n_s_n __pyx_mstate_global->__pyx_n_s_n #define __pyx_n_s_name __pyx_mstate_global->__pyx_n_s_name #define __pyx_n_s_name_2 __pyx_mstate_global->__pyx_n_s_name_2 #define __pyx_n_s_new __pyx_mstate_global->__pyx_n_s_new #define __pyx_n_s_new_record __pyx_mstate_global->__pyx_n_s_new_record #define __pyx_kp_s_no_default___reduce___due_to_non __pyx_mstate_global->__pyx_kp_s_no_default___reduce___due_to_non #define __pyx_n_s_number __pyx_mstate_global->__pyx_n_s_number #define __pyx_n_s_object __pyx_mstate_global->__pyx_n_s_object #define __pyx_n_s_open __pyx_mstate_global->__pyx_n_s_open #define __pyx_n_s_os __pyx_mstate_global->__pyx_n_s_os #define __pyx_n_s_parse_region __pyx_mstate_global->__pyx_n_s_parse_region #define __pyx_n_s_phased __pyx_mstate_global->__pyx_n_s_phased #define __pyx_n_u_phased __pyx_mstate_global->__pyx_n_u_phased #define __pyx_n_s_pickle __pyx_mstate_global->__pyx_n_s_pickle #define __pyx_n_s_pop __pyx_mstate_global->__pyx_n_s_pop #define __pyx_n_s_pysam_libcbcf __pyx_mstate_global->__pyx_n_s_pysam_libcbcf #define __pyx_kp_s_pysam_libcbcf_pyx __pyx_mstate_global->__pyx_kp_s_pysam_libcbcf_pyx #define __pyx_n_s_pysam_utils __pyx_mstate_global->__pyx_n_s_pysam_utils #define __pyx_n_s_pyx_PickleError __pyx_mstate_global->__pyx_n_s_pyx_PickleError #define __pyx_n_s_pyx_checksum __pyx_mstate_global->__pyx_n_s_pyx_checksum #define __pyx_n_s_pyx_result __pyx_mstate_global->__pyx_n_s_pyx_result #define __pyx_n_s_pyx_state __pyx_mstate_global->__pyx_n_s_pyx_state #define __pyx_n_s_pyx_type __pyx_mstate_global->__pyx_n_s_pyx_type #define __pyx_n_s_pyx_unpickle_BaseIndex __pyx_mstate_global->__pyx_n_s_pyx_unpickle_BaseIndex #define __pyx_n_s_pyx_unpickle_VariantContig __pyx_mstate_global->__pyx_n_s_pyx_unpickle_VariantContig #define __pyx_n_s_pyx_unpickle_VariantHeaderCont __pyx_mstate_global->__pyx_n_s_pyx_unpickle_VariantHeaderCont #define __pyx_n_s_pyx_unpickle_VariantHeaderMeta __pyx_mstate_global->__pyx_n_s_pyx_unpickle_VariantHeaderMeta #define __pyx_n_s_pyx_unpickle_VariantHeaderReco __pyx_mstate_global->__pyx_n_s_pyx_unpickle_VariantHeaderReco #define __pyx_n_s_pyx_unpickle_VariantHeaderSamp __pyx_mstate_global->__pyx_n_s_pyx_unpickle_VariantHeaderSamp #define __pyx_n_s_pyx_unpickle_VariantMetadata __pyx_mstate_global->__pyx_n_s_pyx_unpickle_VariantMetadata #define __pyx_n_s_pyx_unpickle_VariantRecordFilt __pyx_mstate_global->__pyx_n_s_pyx_unpickle_VariantRecordFilt #define __pyx_n_s_pyx_unpickle_VariantRecordForm __pyx_mstate_global->__pyx_n_s_pyx_unpickle_VariantRecordForm #define __pyx_n_s_pyx_unpickle_VariantRecordInfo __pyx_mstate_global->__pyx_n_s_pyx_unpickle_VariantRecordInfo #define __pyx_n_s_pyx_unpickle_VariantRecordSamp __pyx_mstate_global->__pyx_n_s_pyx_unpickle_VariantRecordSamp #define __pyx_n_s_pyx_unpickle_VariantRecordSamp_2 __pyx_mstate_global->__pyx_n_s_pyx_unpickle_VariantRecordSamp_2 #define __pyx_n_s_pyx_vtable __pyx_mstate_global->__pyx_n_s_pyx_vtable #define __pyx_n_s_qual __pyx_mstate_global->__pyx_n_s_qual #define __pyx_n_s_quoted __pyx_mstate_global->__pyx_n_s_quoted #define __pyx_n_b_r __pyx_mstate_global->__pyx_n_b_r #define __pyx_n_s_r __pyx_mstate_global->__pyx_n_s_r #define __pyx_n_u_r __pyx_mstate_global->__pyx_n_u_r #define __pyx_n_s_range __pyx_mstate_global->__pyx_n_s_range #define __pyx_n_s_rec __pyx_mstate_global->__pyx_n_s_rec #define __pyx_n_s_record __pyx_mstate_global->__pyx_n_s_record #define __pyx_kp_u_record_must_not_be_None __pyx_mstate_global->__pyx_kp_u_record_must_not_be_None #define __pyx_n_s_records __pyx_mstate_global->__pyx_n_s_records #define __pyx_n_s_reduce __pyx_mstate_global->__pyx_n_s_reduce #define __pyx_n_s_reduce_cython __pyx_mstate_global->__pyx_n_s_reduce_cython #define __pyx_n_s_reduce_ex __pyx_mstate_global->__pyx_n_s_reduce_ex #define __pyx_n_s_ref __pyx_mstate_global->__pyx_n_s_ref #define __pyx_kp_u_ref_allele_must_not_be_null __pyx_mstate_global->__pyx_kp_u_ref_allele_must_not_be_null #define __pyx_n_s_reference __pyx_mstate_global->__pyx_n_s_reference #define __pyx_n_s_region __pyx_mstate_global->__pyx_n_s_region #define __pyx_n_s_remap __pyx_mstate_global->__pyx_n_s_remap #define __pyx_n_s_remove __pyx_mstate_global->__pyx_n_s_remove #define __pyx_n_s_remove_header __pyx_mstate_global->__pyx_n_s_remove_header #define __pyx_n_s_reopen __pyx_mstate_global->__pyx_n_s_reopen #define __pyx_n_s_reset __pyx_mstate_global->__pyx_n_s_reset #define __pyx_n_s_ret __pyx_mstate_global->__pyx_n_s_ret #define __pyx_n_s_reversed __pyx_mstate_global->__pyx_n_s_reversed #define __pyx_n_s_rid __pyx_mstate_global->__pyx_n_s_rid #define __pyx_n_u_rwa __pyx_mstate_global->__pyx_n_u_rwa #define __pyx_n_s_sample __pyx_mstate_global->__pyx_n_s_sample #define __pyx_kp_u_sample_must_not_be_None __pyx_mstate_global->__pyx_kp_u_sample_must_not_be_None #define __pyx_n_s_samples __pyx_mstate_global->__pyx_n_s_samples #define __pyx_n_s_seek __pyx_mstate_global->__pyx_n_s_seek #define __pyx_n_s_self __pyx_mstate_global->__pyx_n_s_self #define __pyx_kp_s_self_iter_cannot_be_converted_to __pyx_mstate_global->__pyx_kp_s_self_iter_cannot_be_converted_to #define __pyx_kp_s_self_ptr_cannot_be_converted_to __pyx_mstate_global->__pyx_kp_s_self_ptr_cannot_be_converted_to #define __pyx_n_s_send __pyx_mstate_global->__pyx_n_s_send #define __pyx_n_s_setstate __pyx_mstate_global->__pyx_n_s_setstate #define __pyx_n_s_setstate_cython __pyx_mstate_global->__pyx_n_s_setstate_cython #define __pyx_n_s_spec __pyx_mstate_global->__pyx_n_s_spec #define __pyx_n_s_split __pyx_mstate_global->__pyx_n_s_split #define __pyx_n_s_src_hdr __pyx_mstate_global->__pyx_n_s_src_hdr #define __pyx_n_s_start __pyx_mstate_global->__pyx_n_s_start #define __pyx_n_s_startswith __pyx_mstate_global->__pyx_n_s_startswith #define __pyx_n_s_state __pyx_mstate_global->__pyx_n_s_state #define __pyx_n_s_stop __pyx_mstate_global->__pyx_n_s_stop #define __pyx_kp_s_stringsource __pyx_mstate_global->__pyx_kp_s_stringsource #define __pyx_n_s_strip __pyx_mstate_global->__pyx_n_s_strip #define __pyx_n_s_subset_samples __pyx_mstate_global->__pyx_n_s_subset_samples #define __pyx_n_s_sys __pyx_mstate_global->__pyx_n_s_sys #define __pyx_kp_u_tabix_index_required __pyx_mstate_global->__pyx_kp_u_tabix_index_required #define __pyx_n_s_tell __pyx_mstate_global->__pyx_n_s_tell #define __pyx_n_s_test __pyx_mstate_global->__pyx_n_s_test #define __pyx_kp_u_this_class_cannot_be_instantiate __pyx_mstate_global->__pyx_kp_u_this_class_cannot_be_instantiate #define __pyx_n_s_threads __pyx_mstate_global->__pyx_n_s_threads #define __pyx_n_s_throw __pyx_mstate_global->__pyx_n_s_throw #define __pyx_n_s_tid __pyx_mstate_global->__pyx_n_s_tid #define __pyx_n_s_tidx __pyx_mstate_global->__pyx_n_s_tidx #define __pyx_n_s_translate __pyx_mstate_global->__pyx_n_s_translate #define __pyx_kp_u_truncated_file __pyx_mstate_global->__pyx_kp_u_truncated_file #define __pyx_n_s_type __pyx_mstate_global->__pyx_n_s_type #define __pyx_kp_u_unable_to_allocate_BCF_record __pyx_mstate_global->__pyx_kp_u_unable_to_allocate_BCF_record #define __pyx_kp_u_unable_to_fetch __pyx_mstate_global->__pyx_kp_u_unable_to_fetch #define __pyx_kp_u_unable_to_fetch_next_record __pyx_mstate_global->__pyx_kp_u_unable_to_fetch_next_record #define __pyx_kp_u_unable_to_parse_next_record __pyx_mstate_global->__pyx_kp_u_unable_to_parse_next_record #define __pyx_kp_u_unable_to_reallocate_VariantHead __pyx_mstate_global->__pyx_kp_u_unable_to_reallocate_VariantHead #define __pyx_kp_u_unknown_INFO __pyx_mstate_global->__pyx_kp_u_unknown_INFO #define __pyx_kp_u_unknown_format __pyx_mstate_global->__pyx_kp_u_unknown_format #define __pyx_kp_u_unknown_mode __pyx_mstate_global->__pyx_kp_u_unknown_mode #define __pyx_kp_u_unknown_type_specified __pyx_mstate_global->__pyx_kp_u_unknown_type_specified #define __pyx_n_s_unquoted_str __pyx_mstate_global->__pyx_n_s_unquoted_str #define __pyx_kp_u_unsupported_header_type_code __pyx_mstate_global->__pyx_kp_u_unsupported_header_type_code #define __pyx_kp_u_unsupported_info_type_code __pyx_mstate_global->__pyx_kp_u_unsupported_info_type_code #define __pyx_kp_u_unsupported_type __pyx_mstate_global->__pyx_kp_u_unsupported_type #define __pyx_kp_u_unsupported_types __pyx_mstate_global->__pyx_kp_u_unsupported_types #define __pyx_n_s_update __pyx_mstate_global->__pyx_n_s_update #define __pyx_n_s_upper __pyx_mstate_global->__pyx_n_s_upper #define __pyx_n_s_use_setstate __pyx_mstate_global->__pyx_n_s_use_setstate #define __pyx_kp_u_utf_8 __pyx_mstate_global->__pyx_kp_u_utf_8 #define __pyx_n_s_v __pyx_mstate_global->__pyx_n_s_v #define __pyx_n_s_value __pyx_mstate_global->__pyx_n_s_value #define __pyx_kp_u_value_expected_to_be_scalar_give __pyx_mstate_global->__pyx_kp_u_value_expected_to_be_scalar_give #define __pyx_n_s_values __pyx_mstate_global->__pyx_n_s_values #define __pyx_kp_u_values_expected_to_be_tuple_give __pyx_mstate_global->__pyx_kp_u_values_expected_to_be_tuple_give #define __pyx_n_s_vars __pyx_mstate_global->__pyx_n_s_vars #define __pyx_kp_u_vcf_format_failed __pyx_mstate_global->__pyx_kp_u_vcf_format_failed #define __pyx_n_b_w __pyx_mstate_global->__pyx_n_b_w #define __pyx_n_u_w __pyx_mstate_global->__pyx_n_u_w #define __pyx_n_u_wb __pyx_mstate_global->__pyx_n_u_wb #define __pyx_n_u_wb0 __pyx_mstate_global->__pyx_n_u_wb0 #define __pyx_n_u_wbu __pyx_mstate_global->__pyx_n_u_wbu #define __pyx_n_s_write __pyx_mstate_global->__pyx_n_s_write #define __pyx_n_u_wz __pyx_mstate_global->__pyx_n_u_wz #define __pyx_int_0 __pyx_mstate_global->__pyx_int_0 #define __pyx_int_1 __pyx_mstate_global->__pyx_int_1 #define __pyx_int_2 __pyx_mstate_global->__pyx_int_2 #define __pyx_int_10091417 __pyx_mstate_global->__pyx_int_10091417 #define __pyx_int_10698032 __pyx_mstate_global->__pyx_int_10698032 #define __pyx_int_31479882 __pyx_mstate_global->__pyx_int_31479882 #define __pyx_int_33440904 __pyx_mstate_global->__pyx_int_33440904 #define __pyx_int_39264352 __pyx_mstate_global->__pyx_int_39264352 #define __pyx_int_41264896 __pyx_mstate_global->__pyx_int_41264896 #define __pyx_int_93650198 __pyx_mstate_global->__pyx_int_93650198 #define __pyx_int_94171383 __pyx_mstate_global->__pyx_int_94171383 #define __pyx_int_97976187 __pyx_mstate_global->__pyx_int_97976187 #define __pyx_int_118286449 __pyx_mstate_global->__pyx_int_118286449 #define __pyx_int_126454353 __pyx_mstate_global->__pyx_int_126454353 #define __pyx_int_135711299 __pyx_mstate_global->__pyx_int_135711299 #define __pyx_int_145625440 __pyx_mstate_global->__pyx_int_145625440 #define __pyx_int_164668780 __pyx_mstate_global->__pyx_int_164668780 #define __pyx_int_168021462 __pyx_mstate_global->__pyx_int_168021462 #define __pyx_int_199651019 __pyx_mstate_global->__pyx_int_199651019 #define __pyx_int_215036767 __pyx_mstate_global->__pyx_int_215036767 #define __pyx_int_227765731 __pyx_mstate_global->__pyx_int_227765731 #define __pyx_int_232881935 __pyx_mstate_global->__pyx_int_232881935 #define __pyx_int_248899179 __pyx_mstate_global->__pyx_int_248899179 #define __pyx_int_250317299 __pyx_mstate_global->__pyx_int_250317299 #define __pyx_int_4294967294 __pyx_mstate_global->__pyx_int_4294967294 #define __pyx_int_neg_1 __pyx_mstate_global->__pyx_int_neg_1 #define __pyx_k__41 __pyx_mstate_global->__pyx_k__41 #define __pyx_k__146 __pyx_mstate_global->__pyx_k__146 #define __pyx_k__158 __pyx_mstate_global->__pyx_k__158 #define __pyx_k__193 __pyx_mstate_global->__pyx_k__193 #define __pyx_k__206 __pyx_mstate_global->__pyx_k__206 #define __pyx_tuple_ __pyx_mstate_global->__pyx_tuple_ #define __pyx_tuple__3 __pyx_mstate_global->__pyx_tuple__3 #define __pyx_tuple__4 __pyx_mstate_global->__pyx_tuple__4 #define __pyx_tuple__5 __pyx_mstate_global->__pyx_tuple__5 #define __pyx_tuple__6 __pyx_mstate_global->__pyx_tuple__6 #define __pyx_tuple__7 __pyx_mstate_global->__pyx_tuple__7 #define __pyx_tuple__8 __pyx_mstate_global->__pyx_tuple__8 #define __pyx_tuple__9 __pyx_mstate_global->__pyx_tuple__9 #define __pyx_tuple__10 __pyx_mstate_global->__pyx_tuple__10 #define __pyx_tuple__11 __pyx_mstate_global->__pyx_tuple__11 #define __pyx_tuple__13 __pyx_mstate_global->__pyx_tuple__13 #define __pyx_tuple__14 __pyx_mstate_global->__pyx_tuple__14 #define __pyx_tuple__15 __pyx_mstate_global->__pyx_tuple__15 #define __pyx_tuple__16 __pyx_mstate_global->__pyx_tuple__16 #define __pyx_tuple__17 __pyx_mstate_global->__pyx_tuple__17 #define __pyx_tuple__18 __pyx_mstate_global->__pyx_tuple__18 #define __pyx_tuple__19 __pyx_mstate_global->__pyx_tuple__19 #define __pyx_tuple__20 __pyx_mstate_global->__pyx_tuple__20 #define __pyx_tuple__21 __pyx_mstate_global->__pyx_tuple__21 #define __pyx_tuple__22 __pyx_mstate_global->__pyx_tuple__22 #define __pyx_tuple__23 __pyx_mstate_global->__pyx_tuple__23 #define __pyx_tuple__24 __pyx_mstate_global->__pyx_tuple__24 #define __pyx_tuple__25 __pyx_mstate_global->__pyx_tuple__25 #define __pyx_tuple__26 __pyx_mstate_global->__pyx_tuple__26 #define __pyx_tuple__27 __pyx_mstate_global->__pyx_tuple__27 #define __pyx_tuple__28 __pyx_mstate_global->__pyx_tuple__28 #define __pyx_tuple__29 __pyx_mstate_global->__pyx_tuple__29 #define __pyx_tuple__30 __pyx_mstate_global->__pyx_tuple__30 #define __pyx_tuple__31 __pyx_mstate_global->__pyx_tuple__31 #define __pyx_tuple__32 __pyx_mstate_global->__pyx_tuple__32 #define __pyx_tuple__43 __pyx_mstate_global->__pyx_tuple__43 #define __pyx_tuple__47 __pyx_mstate_global->__pyx_tuple__47 #define __pyx_tuple__48 __pyx_mstate_global->__pyx_tuple__48 #define __pyx_tuple__51 __pyx_mstate_global->__pyx_tuple__51 #define __pyx_tuple__57 __pyx_mstate_global->__pyx_tuple__57 #define __pyx_tuple__58 __pyx_mstate_global->__pyx_tuple__58 #define __pyx_tuple__60 __pyx_mstate_global->__pyx_tuple__60 #define __pyx_tuple__61 __pyx_mstate_global->__pyx_tuple__61 #define __pyx_tuple__76 __pyx_mstate_global->__pyx_tuple__76 #define __pyx_tuple__77 __pyx_mstate_global->__pyx_tuple__77 #define __pyx_tuple__88 __pyx_mstate_global->__pyx_tuple__88 #define __pyx_tuple__91 __pyx_mstate_global->__pyx_tuple__91 #define __pyx_tuple__95 __pyx_mstate_global->__pyx_tuple__95 #define __pyx_tuple__98 __pyx_mstate_global->__pyx_tuple__98 #define __pyx_slice__240 __pyx_mstate_global->__pyx_slice__240 #define __pyx_tuple__100 __pyx_mstate_global->__pyx_tuple__100 #define __pyx_tuple__103 __pyx_mstate_global->__pyx_tuple__103 #define __pyx_tuple__105 __pyx_mstate_global->__pyx_tuple__105 #define __pyx_tuple__106 __pyx_mstate_global->__pyx_tuple__106 #define __pyx_tuple__111 __pyx_mstate_global->__pyx_tuple__111 #define __pyx_tuple__123 __pyx_mstate_global->__pyx_tuple__123 #define __pyx_tuple__124 __pyx_mstate_global->__pyx_tuple__124 #define __pyx_tuple__135 __pyx_mstate_global->__pyx_tuple__135 #define __pyx_tuple__136 __pyx_mstate_global->__pyx_tuple__136 #define __pyx_tuple__164 __pyx_mstate_global->__pyx_tuple__164 #define __pyx_tuple__165 __pyx_mstate_global->__pyx_tuple__165 #define __pyx_tuple__166 __pyx_mstate_global->__pyx_tuple__166 #define __pyx_tuple__167 __pyx_mstate_global->__pyx_tuple__167 #define __pyx_tuple__168 __pyx_mstate_global->__pyx_tuple__168 #define __pyx_tuple__169 __pyx_mstate_global->__pyx_tuple__169 #define __pyx_tuple__170 __pyx_mstate_global->__pyx_tuple__170 #define __pyx_tuple__171 __pyx_mstate_global->__pyx_tuple__171 #define __pyx_tuple__172 __pyx_mstate_global->__pyx_tuple__172 #define __pyx_tuple__173 __pyx_mstate_global->__pyx_tuple__173 #define __pyx_tuple__174 __pyx_mstate_global->__pyx_tuple__174 #define __pyx_tuple__175 __pyx_mstate_global->__pyx_tuple__175 #define __pyx_tuple__176 __pyx_mstate_global->__pyx_tuple__176 #define __pyx_tuple__177 __pyx_mstate_global->__pyx_tuple__177 #define __pyx_tuple__180 __pyx_mstate_global->__pyx_tuple__180 #define __pyx_tuple__182 __pyx_mstate_global->__pyx_tuple__182 #define __pyx_tuple__183 __pyx_mstate_global->__pyx_tuple__183 #define __pyx_tuple__197 __pyx_mstate_global->__pyx_tuple__197 #define __pyx_tuple__210 __pyx_mstate_global->__pyx_tuple__210 #define __pyx_tuple__219 __pyx_mstate_global->__pyx_tuple__219 #define __pyx_tuple__220 __pyx_mstate_global->__pyx_tuple__220 #define __pyx_tuple__221 __pyx_mstate_global->__pyx_tuple__221 #define __pyx_tuple__222 __pyx_mstate_global->__pyx_tuple__222 #define __pyx_tuple__223 __pyx_mstate_global->__pyx_tuple__223 #define __pyx_tuple__224 __pyx_mstate_global->__pyx_tuple__224 #define __pyx_tuple__227 __pyx_mstate_global->__pyx_tuple__227 #define __pyx_tuple__228 __pyx_mstate_global->__pyx_tuple__228 #define __pyx_tuple__232 __pyx_mstate_global->__pyx_tuple__232 #define __pyx_tuple__233 __pyx_mstate_global->__pyx_tuple__233 #define __pyx_tuple__234 __pyx_mstate_global->__pyx_tuple__234 #define __pyx_tuple__236 __pyx_mstate_global->__pyx_tuple__236 #define __pyx_tuple__238 __pyx_mstate_global->__pyx_tuple__238 #define __pyx_tuple__239 __pyx_mstate_global->__pyx_tuple__239 #define __pyx_tuple__242 __pyx_mstate_global->__pyx_tuple__242 #define __pyx_tuple__247 __pyx_mstate_global->__pyx_tuple__247 #define __pyx_tuple__249 __pyx_mstate_global->__pyx_tuple__249 #define __pyx_tuple__250 __pyx_mstate_global->__pyx_tuple__250 #define __pyx_tuple__253 __pyx_mstate_global->__pyx_tuple__253 #define __pyx_tuple__255 __pyx_mstate_global->__pyx_tuple__255 #define __pyx_tuple__256 __pyx_mstate_global->__pyx_tuple__256 #define __pyx_tuple__260 __pyx_mstate_global->__pyx_tuple__260 #define __pyx_tuple__262 __pyx_mstate_global->__pyx_tuple__262 #define __pyx_tuple__264 __pyx_mstate_global->__pyx_tuple__264 #define __pyx_tuple__266 __pyx_mstate_global->__pyx_tuple__266 #define __pyx_tuple__270 __pyx_mstate_global->__pyx_tuple__270 #define __pyx_tuple__275 __pyx_mstate_global->__pyx_tuple__275 #define __pyx_tuple__277 __pyx_mstate_global->__pyx_tuple__277 #define __pyx_tuple__279 __pyx_mstate_global->__pyx_tuple__279 #define __pyx_tuple__280 __pyx_mstate_global->__pyx_tuple__280 #define __pyx_tuple__281 __pyx_mstate_global->__pyx_tuple__281 #define __pyx_tuple__282 __pyx_mstate_global->__pyx_tuple__282 #define __pyx_tuple__283 __pyx_mstate_global->__pyx_tuple__283 #define __pyx_tuple__284 __pyx_mstate_global->__pyx_tuple__284 #define __pyx_tuple__285 __pyx_mstate_global->__pyx_tuple__285 #define __pyx_tuple__286 __pyx_mstate_global->__pyx_tuple__286 #define __pyx_tuple__287 __pyx_mstate_global->__pyx_tuple__287 #define __pyx_tuple__288 __pyx_mstate_global->__pyx_tuple__288 #define __pyx_tuple__289 __pyx_mstate_global->__pyx_tuple__289 #define __pyx_tuple__290 __pyx_mstate_global->__pyx_tuple__290 #define __pyx_tuple__291 __pyx_mstate_global->__pyx_tuple__291 #define __pyx_tuple__292 __pyx_mstate_global->__pyx_tuple__292 #define __pyx_tuple__293 __pyx_mstate_global->__pyx_tuple__293 #define __pyx_tuple__294 __pyx_mstate_global->__pyx_tuple__294 #define __pyx_tuple__295 __pyx_mstate_global->__pyx_tuple__295 #define __pyx_tuple__296 __pyx_mstate_global->__pyx_tuple__296 #define __pyx_tuple__297 __pyx_mstate_global->__pyx_tuple__297 #define __pyx_tuple__298 __pyx_mstate_global->__pyx_tuple__298 #define __pyx_tuple__299 __pyx_mstate_global->__pyx_tuple__299 #define __pyx_tuple__300 __pyx_mstate_global->__pyx_tuple__300 #define __pyx_tuple__301 __pyx_mstate_global->__pyx_tuple__301 #define __pyx_tuple__302 __pyx_mstate_global->__pyx_tuple__302 #define __pyx_tuple__303 __pyx_mstate_global->__pyx_tuple__303 #define __pyx_tuple__304 __pyx_mstate_global->__pyx_tuple__304 #define __pyx_tuple__305 __pyx_mstate_global->__pyx_tuple__305 #define __pyx_tuple__306 __pyx_mstate_global->__pyx_tuple__306 #define __pyx_tuple__307 __pyx_mstate_global->__pyx_tuple__307 #define __pyx_tuple__308 __pyx_mstate_global->__pyx_tuple__308 #define __pyx_tuple__309 __pyx_mstate_global->__pyx_tuple__309 #define __pyx_tuple__310 __pyx_mstate_global->__pyx_tuple__310 #define __pyx_tuple__311 __pyx_mstate_global->__pyx_tuple__311 #define __pyx_tuple__312 __pyx_mstate_global->__pyx_tuple__312 #define __pyx_tuple__313 __pyx_mstate_global->__pyx_tuple__313 #define __pyx_tuple__314 __pyx_mstate_global->__pyx_tuple__314 #define __pyx_tuple__315 __pyx_mstate_global->__pyx_tuple__315 #define __pyx_tuple__316 __pyx_mstate_global->__pyx_tuple__316 #define __pyx_tuple__317 __pyx_mstate_global->__pyx_tuple__317 #define __pyx_tuple__318 __pyx_mstate_global->__pyx_tuple__318 #define __pyx_tuple__319 __pyx_mstate_global->__pyx_tuple__319 #define __pyx_tuple__320 __pyx_mstate_global->__pyx_tuple__320 #define __pyx_tuple__321 __pyx_mstate_global->__pyx_tuple__321 #define __pyx_tuple__322 __pyx_mstate_global->__pyx_tuple__322 #define __pyx_tuple__324 __pyx_mstate_global->__pyx_tuple__324 #define __pyx_tuple__325 __pyx_mstate_global->__pyx_tuple__325 #define __pyx_tuple__326 __pyx_mstate_global->__pyx_tuple__326 #define __pyx_tuple__327 __pyx_mstate_global->__pyx_tuple__327 #define __pyx_tuple__328 __pyx_mstate_global->__pyx_tuple__328 #define __pyx_tuple__329 __pyx_mstate_global->__pyx_tuple__329 #define __pyx_codeobj__33 __pyx_mstate_global->__pyx_codeobj__33 #define __pyx_codeobj__34 __pyx_mstate_global->__pyx_codeobj__34 #define __pyx_codeobj__35 __pyx_mstate_global->__pyx_codeobj__35 #define __pyx_codeobj__36 __pyx_mstate_global->__pyx_codeobj__36 #define __pyx_codeobj__37 __pyx_mstate_global->__pyx_codeobj__37 #define __pyx_codeobj__38 __pyx_mstate_global->__pyx_codeobj__38 #define __pyx_codeobj__39 __pyx_mstate_global->__pyx_codeobj__39 #define __pyx_codeobj__40 __pyx_mstate_global->__pyx_codeobj__40 #define __pyx_codeobj__42 __pyx_mstate_global->__pyx_codeobj__42 #define __pyx_codeobj__44 __pyx_mstate_global->__pyx_codeobj__44 #define __pyx_codeobj__45 __pyx_mstate_global->__pyx_codeobj__45 #define __pyx_codeobj__46 __pyx_mstate_global->__pyx_codeobj__46 #define __pyx_codeobj__49 __pyx_mstate_global->__pyx_codeobj__49 #define __pyx_codeobj__50 __pyx_mstate_global->__pyx_codeobj__50 #define __pyx_codeobj__54 __pyx_mstate_global->__pyx_codeobj__54 #define __pyx_codeobj__55 __pyx_mstate_global->__pyx_codeobj__55 #define __pyx_codeobj__56 __pyx_mstate_global->__pyx_codeobj__56 #define __pyx_codeobj__59 __pyx_mstate_global->__pyx_codeobj__59 #define __pyx_codeobj__62 __pyx_mstate_global->__pyx_codeobj__62 #define __pyx_codeobj__63 __pyx_mstate_global->__pyx_codeobj__63 #define __pyx_codeobj__64 __pyx_mstate_global->__pyx_codeobj__64 #define __pyx_codeobj__65 __pyx_mstate_global->__pyx_codeobj__65 #define __pyx_codeobj__66 __pyx_mstate_global->__pyx_codeobj__66 #define __pyx_codeobj__67 __pyx_mstate_global->__pyx_codeobj__67 #define __pyx_codeobj__68 __pyx_mstate_global->__pyx_codeobj__68 #define __pyx_codeobj__69 __pyx_mstate_global->__pyx_codeobj__69 #define __pyx_codeobj__70 __pyx_mstate_global->__pyx_codeobj__70 #define __pyx_codeobj__71 __pyx_mstate_global->__pyx_codeobj__71 #define __pyx_codeobj__72 __pyx_mstate_global->__pyx_codeobj__72 #define __pyx_codeobj__73 __pyx_mstate_global->__pyx_codeobj__73 #define __pyx_codeobj__74 __pyx_mstate_global->__pyx_codeobj__74 #define __pyx_codeobj__75 __pyx_mstate_global->__pyx_codeobj__75 #define __pyx_codeobj__78 __pyx_mstate_global->__pyx_codeobj__78 #define __pyx_codeobj__79 __pyx_mstate_global->__pyx_codeobj__79 #define __pyx_codeobj__80 __pyx_mstate_global->__pyx_codeobj__80 #define __pyx_codeobj__81 __pyx_mstate_global->__pyx_codeobj__81 #define __pyx_codeobj__82 __pyx_mstate_global->__pyx_codeobj__82 #define __pyx_codeobj__83 __pyx_mstate_global->__pyx_codeobj__83 #define __pyx_codeobj__84 __pyx_mstate_global->__pyx_codeobj__84 #define __pyx_codeobj__85 __pyx_mstate_global->__pyx_codeobj__85 #define __pyx_codeobj__86 __pyx_mstate_global->__pyx_codeobj__86 #define __pyx_codeobj__87 __pyx_mstate_global->__pyx_codeobj__87 #define __pyx_codeobj__89 __pyx_mstate_global->__pyx_codeobj__89 #define __pyx_codeobj__90 __pyx_mstate_global->__pyx_codeobj__90 #define __pyx_codeobj__92 __pyx_mstate_global->__pyx_codeobj__92 #define __pyx_codeobj__93 __pyx_mstate_global->__pyx_codeobj__93 #define __pyx_codeobj__94 __pyx_mstate_global->__pyx_codeobj__94 #define __pyx_codeobj__96 __pyx_mstate_global->__pyx_codeobj__96 #define __pyx_codeobj__97 __pyx_mstate_global->__pyx_codeobj__97 #define __pyx_codeobj__99 __pyx_mstate_global->__pyx_codeobj__99 #define __pyx_codeobj__101 __pyx_mstate_global->__pyx_codeobj__101 #define __pyx_codeobj__102 __pyx_mstate_global->__pyx_codeobj__102 #define __pyx_codeobj__104 __pyx_mstate_global->__pyx_codeobj__104 #define __pyx_codeobj__107 __pyx_mstate_global->__pyx_codeobj__107 #define __pyx_codeobj__108 __pyx_mstate_global->__pyx_codeobj__108 #define __pyx_codeobj__109 __pyx_mstate_global->__pyx_codeobj__109 #define __pyx_codeobj__110 __pyx_mstate_global->__pyx_codeobj__110 #define __pyx_codeobj__112 __pyx_mstate_global->__pyx_codeobj__112 #define __pyx_codeobj__113 __pyx_mstate_global->__pyx_codeobj__113 #define __pyx_codeobj__114 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__pyx_t_9 = __pyx_t_8; for (__pyx_t_10 = __pyx_v_src_values; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { __pyx_v_i = __pyx_t_10; /* "pysam/libcbcf.pyx":458 * memcpy(dst_datac, src_datac, src_values) * for i in range(src_values, dst_values): * dst_datac[i] = 0 # <<<<<<<<<<<<<< * elif src_type == BCF_BT_INT8 and dst_type == BCF_BT_INT32: * src_datai8 = <int8_t *>src_data */ (__pyx_v_dst_datac[__pyx_v_i]) = 0; } /* "pysam/libcbcf.pyx":453 * raise ValueError('Cannot copy arrays with src_values={} > dst_values={}'.format(src_values, dst_values)) * * if src_type == dst_type == BCF_BT_CHAR: # <<<<<<<<<<<<<< * src_datac = <char *>src_data * dst_datac = <char *>dst_data */ goto __pyx_L4; } /* "pysam/libcbcf.pyx":459 * for i in range(src_values, dst_values): * dst_datac[i] = 0 * elif src_type == BCF_BT_INT8 and dst_type == BCF_BT_INT32: # <<<<<<<<<<<<<< * src_datai8 = <int8_t *>src_data * dst_datai = <int32_t *>dst_data */ __pyx_t_11 = (__pyx_v_src_type == BCF_BT_INT8); if (__pyx_t_11) { } else { __pyx_t_1 = __pyx_t_11; goto __pyx_L7_bool_binop_done; } __pyx_t_11 = (__pyx_v_dst_type == BCF_BT_INT32); __pyx_t_1 = __pyx_t_11; __pyx_L7_bool_binop_done:; if (__pyx_t_1) { /* "pysam/libcbcf.pyx":460 * dst_datac[i] = 0 * elif src_type == BCF_BT_INT8 and dst_type == BCF_BT_INT32: * src_datai8 = <int8_t *>src_data # <<<<<<<<<<<<<< * dst_datai = <int32_t *>dst_data * for i in range(src_values): */ __pyx_v_src_datai8 = ((int8_t *)__pyx_v_src_data); /* "pysam/libcbcf.pyx":461 * elif src_type == BCF_BT_INT8 and dst_type == BCF_BT_INT32: * src_datai8 = <int8_t *>src_data * dst_datai = <int32_t *>dst_data # <<<<<<<<<<<<<< * for i in range(src_values): * val = src_datai8[i] */ __pyx_v_dst_datai = ((int32_t *)__pyx_v_dst_data); /* "pysam/libcbcf.pyx":462 * src_datai8 = <int8_t *>src_data * dst_datai = <int32_t *>dst_data * for i in range(src_values): # <<<<<<<<<<<<<< * val = src_datai8[i] * if val == bcf_int8_missing: */ __pyx_t_8 = __pyx_v_src_values; __pyx_t_9 = __pyx_t_8; for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { __pyx_v_i = __pyx_t_10; /* "pysam/libcbcf.pyx":463 * dst_datai = <int32_t *>dst_data * for i in range(src_values): * val = src_datai8[i] # <<<<<<<<<<<<<< * if val == bcf_int8_missing: * val = bcf_int32_missing */ __pyx_v_val = (__pyx_v_src_datai8[__pyx_v_i]); /* "pysam/libcbcf.pyx":464 * for i in range(src_values): * val = src_datai8[i] * if val == bcf_int8_missing: # <<<<<<<<<<<<<< * val = bcf_int32_missing * elif val == bcf_int8_vector_end: */ __pyx_t_1 = (__pyx_v_val == bcf_int8_missing); if (__pyx_t_1) { /* "pysam/libcbcf.pyx":465 * val = src_datai8[i] * if val == bcf_int8_missing: * val = bcf_int32_missing # <<<<<<<<<<<<<< * elif val == bcf_int8_vector_end: * val = bcf_int32_vector_end */ __pyx_v_val = bcf_int32_missing; /* "pysam/libcbcf.pyx":464 * for i in range(src_values): * val = src_datai8[i] * if val == bcf_int8_missing: # <<<<<<<<<<<<<< * val = bcf_int32_missing * elif val == bcf_int8_vector_end: */ goto __pyx_L11; } /* "pysam/libcbcf.pyx":466 * if val == bcf_int8_missing: * val = bcf_int32_missing * elif val == bcf_int8_vector_end: # <<<<<<<<<<<<<< * val = bcf_int32_vector_end * dst_datai[i] = val */ __pyx_t_1 = (__pyx_v_val == bcf_int8_vector_end); if (__pyx_t_1) { /* "pysam/libcbcf.pyx":467 * val = bcf_int32_missing * elif val == bcf_int8_vector_end: * val = bcf_int32_vector_end # <<<<<<<<<<<<<< * dst_datai[i] = val * for i in range(src_values, dst_values): */ __pyx_v_val = bcf_int32_vector_end; /* "pysam/libcbcf.pyx":466 * if val == bcf_int8_missing: * val = bcf_int32_missing * elif val == bcf_int8_vector_end: # <<<<<<<<<<<<<< * val = bcf_int32_vector_end * dst_datai[i] = val */ } __pyx_L11:; /* "pysam/libcbcf.pyx":468 * elif val == bcf_int8_vector_end: * val = bcf_int32_vector_end * dst_datai[i] = val # <<<<<<<<<<<<<< * for i in range(src_values, dst_values): * dst_datai[i] = bcf_int32_missing if not vlen else bcf_int32_vector_end */ (__pyx_v_dst_datai[__pyx_v_i]) = __pyx_v_val; } /* "pysam/libcbcf.pyx":469 * val = bcf_int32_vector_end * dst_datai[i] = val * for i in range(src_values, dst_values): # <<<<<<<<<<<<<< * dst_datai[i] = bcf_int32_missing if not vlen else bcf_int32_vector_end * elif src_type == BCF_BT_INT16 and dst_type == BCF_BT_INT32: */ __pyx_t_8 = __pyx_v_dst_values; __pyx_t_9 = __pyx_t_8; for (__pyx_t_10 = __pyx_v_src_values; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { __pyx_v_i = __pyx_t_10; /* "pysam/libcbcf.pyx":470 * dst_datai[i] = val * for i in range(src_values, dst_values): * dst_datai[i] = bcf_int32_missing if not vlen else bcf_int32_vector_end # <<<<<<<<<<<<<< * elif src_type == BCF_BT_INT16 and dst_type == BCF_BT_INT32: * src_datai16 = <int16_t *>src_data */ __pyx_t_1 = (!(__pyx_v_vlen != 0)); if (__pyx_t_1) { __pyx_t_12 = bcf_int32_missing; } else { __pyx_t_12 = bcf_int32_vector_end; } (__pyx_v_dst_datai[__pyx_v_i]) = __pyx_t_12; } /* "pysam/libcbcf.pyx":459 * for i in range(src_values, dst_values): * dst_datac[i] = 0 * elif src_type == BCF_BT_INT8 and dst_type == BCF_BT_INT32: # <<<<<<<<<<<<<< * src_datai8 = <int8_t *>src_data * dst_datai = <int32_t *>dst_data */ goto __pyx_L4; } /* "pysam/libcbcf.pyx":471 * for i in range(src_values, dst_values): * dst_datai[i] = bcf_int32_missing if not vlen else bcf_int32_vector_end * elif src_type == BCF_BT_INT16 and dst_type == BCF_BT_INT32: # <<<<<<<<<<<<<< * src_datai16 = <int16_t *>src_data * dst_datai = <int32_t *>dst_data */ __pyx_t_11 = (__pyx_v_src_type == BCF_BT_INT16); if (__pyx_t_11) { } else { __pyx_t_1 = __pyx_t_11; goto __pyx_L14_bool_binop_done; } __pyx_t_11 = (__pyx_v_dst_type == BCF_BT_INT32); __pyx_t_1 = __pyx_t_11; __pyx_L14_bool_binop_done:; if (__pyx_t_1) { /* "pysam/libcbcf.pyx":472 * dst_datai[i] = bcf_int32_missing if not vlen else bcf_int32_vector_end * elif src_type == BCF_BT_INT16 and dst_type == BCF_BT_INT32: * src_datai16 = <int16_t *>src_data # <<<<<<<<<<<<<< * dst_datai = <int32_t *>dst_data * for i in range(src_values): */ __pyx_v_src_datai16 = ((int16_t *)__pyx_v_src_data); /* "pysam/libcbcf.pyx":473 * elif src_type == BCF_BT_INT16 and dst_type == BCF_BT_INT32: * src_datai16 = <int16_t *>src_data * dst_datai = <int32_t *>dst_data # <<<<<<<<<<<<<< * for i in range(src_values): * val = src_datai16[i] */ __pyx_v_dst_datai = ((int32_t *)__pyx_v_dst_data); /* "pysam/libcbcf.pyx":474 * src_datai16 = <int16_t *>src_data * dst_datai = <int32_t *>dst_data * for i in range(src_values): # <<<<<<<<<<<<<< * val = src_datai16[i] * if val == bcf_int16_missing: */ __pyx_t_8 = __pyx_v_src_values; __pyx_t_9 = __pyx_t_8; for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { __pyx_v_i = __pyx_t_10; /* "pysam/libcbcf.pyx":475 * dst_datai = <int32_t *>dst_data * for i in range(src_values): * val = src_datai16[i] # <<<<<<<<<<<<<< * if val == bcf_int16_missing: * val = bcf_int32_missing */ __pyx_v_val = (__pyx_v_src_datai16[__pyx_v_i]); /* "pysam/libcbcf.pyx":476 * for i in range(src_values): * val = src_datai16[i] * if val == bcf_int16_missing: # <<<<<<<<<<<<<< * val = bcf_int32_missing * elif val == bcf_int16_vector_end: */ __pyx_t_1 = (__pyx_v_val == bcf_int16_missing); if (__pyx_t_1) { /* "pysam/libcbcf.pyx":477 * val = src_datai16[i] * if val == bcf_int16_missing: * val = bcf_int32_missing # <<<<<<<<<<<<<< * elif val == bcf_int16_vector_end: * val = bcf_int32_vector_end */ __pyx_v_val = bcf_int32_missing; /* "pysam/libcbcf.pyx":476 * for i in range(src_values): * val = src_datai16[i] * if val == bcf_int16_missing: # <<<<<<<<<<<<<< * val = bcf_int32_missing * elif val == bcf_int16_vector_end: */ goto __pyx_L18; } /* "pysam/libcbcf.pyx":478 * if val == bcf_int16_missing: * val = bcf_int32_missing * elif val == bcf_int16_vector_end: # <<<<<<<<<<<<<< * val = bcf_int32_vector_end * dst_datai[i] = val */ __pyx_t_1 = (__pyx_v_val == bcf_int16_vector_end); if (__pyx_t_1) { /* "pysam/libcbcf.pyx":479 * val = bcf_int32_missing * elif val == bcf_int16_vector_end: * val = bcf_int32_vector_end # <<<<<<<<<<<<<< * dst_datai[i] = val * for i in range(src_values, dst_values): */ __pyx_v_val = bcf_int32_vector_end; /* "pysam/libcbcf.pyx":478 * if val == bcf_int16_missing: * val = bcf_int32_missing * elif val == bcf_int16_vector_end: # <<<<<<<<<<<<<< * val = bcf_int32_vector_end * dst_datai[i] = val */ } __pyx_L18:; /* "pysam/libcbcf.pyx":480 * elif val == bcf_int16_vector_end: * val = bcf_int32_vector_end * dst_datai[i] = val # <<<<<<<<<<<<<< * for i in range(src_values, dst_values): * dst_datai[i] = bcf_int32_missing if not vlen else bcf_int32_vector_end */ (__pyx_v_dst_datai[__pyx_v_i]) = __pyx_v_val; } /* "pysam/libcbcf.pyx":481 * val = bcf_int32_vector_end * dst_datai[i] = val * for i in range(src_values, dst_values): # <<<<<<<<<<<<<< * dst_datai[i] = bcf_int32_missing if not vlen else bcf_int32_vector_end * elif src_type == BCF_BT_INT32 and dst_type == BCF_BT_INT32: */ __pyx_t_8 = __pyx_v_dst_values; __pyx_t_9 = __pyx_t_8; for (__pyx_t_10 = __pyx_v_src_values; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { __pyx_v_i = __pyx_t_10; /* "pysam/libcbcf.pyx":482 * dst_datai[i] = val * for i in range(src_values, dst_values): * dst_datai[i] = bcf_int32_missing if not vlen else bcf_int32_vector_end # <<<<<<<<<<<<<< * elif src_type == BCF_BT_INT32 and dst_type == BCF_BT_INT32: * src_datai32 = <int32_t *>src_data */ __pyx_t_1 = (!(__pyx_v_vlen != 0)); if (__pyx_t_1) { __pyx_t_12 = bcf_int32_missing; } else { __pyx_t_12 = bcf_int32_vector_end; } (__pyx_v_dst_datai[__pyx_v_i]) = __pyx_t_12; } /* "pysam/libcbcf.pyx":471 * for i in range(src_values, dst_values): * dst_datai[i] = bcf_int32_missing if not vlen else bcf_int32_vector_end * elif src_type == BCF_BT_INT16 and dst_type == BCF_BT_INT32: # <<<<<<<<<<<<<< * src_datai16 = <int16_t *>src_data * dst_datai = <int32_t *>dst_data */ goto __pyx_L4; } /* "pysam/libcbcf.pyx":483 * for i in range(src_values, dst_values): * dst_datai[i] = bcf_int32_missing if not vlen else bcf_int32_vector_end * elif src_type == BCF_BT_INT32 and dst_type == BCF_BT_INT32: # <<<<<<<<<<<<<< * src_datai32 = <int32_t *>src_data * dst_datai = <int32_t *>dst_data */ __pyx_t_11 = (__pyx_v_src_type == BCF_BT_INT32); if (__pyx_t_11) { } else { __pyx_t_1 = __pyx_t_11; goto __pyx_L21_bool_binop_done; } __pyx_t_11 = (__pyx_v_dst_type == BCF_BT_INT32); __pyx_t_1 = __pyx_t_11; __pyx_L21_bool_binop_done:; if (__pyx_t_1) { /* "pysam/libcbcf.pyx":484 * dst_datai[i] = bcf_int32_missing if not vlen else bcf_int32_vector_end * elif src_type == BCF_BT_INT32 and dst_type == BCF_BT_INT32: * src_datai32 = <int32_t *>src_data # <<<<<<<<<<<<<< * dst_datai = <int32_t *>dst_data * for i in range(src_values): */ __pyx_v_src_datai32 = ((int32_t *)__pyx_v_src_data); /* "pysam/libcbcf.pyx":485 * elif src_type == BCF_BT_INT32 and dst_type == BCF_BT_INT32: * src_datai32 = <int32_t *>src_data * dst_datai = <int32_t *>dst_data # <<<<<<<<<<<<<< * for i in range(src_values): * dst_datai[i] = src_datai32[i] */ __pyx_v_dst_datai = ((int32_t *)__pyx_v_dst_data); /* "pysam/libcbcf.pyx":486 * src_datai32 = <int32_t *>src_data * dst_datai = <int32_t *>dst_data * for i in range(src_values): # <<<<<<<<<<<<<< * dst_datai[i] = src_datai32[i] * for i in range(src_values, dst_values): */ __pyx_t_8 = __pyx_v_src_values; __pyx_t_9 = __pyx_t_8; for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { __pyx_v_i = __pyx_t_10; /* "pysam/libcbcf.pyx":487 * dst_datai = <int32_t *>dst_data * for i in range(src_values): * dst_datai[i] = src_datai32[i] # <<<<<<<<<<<<<< * for i in range(src_values, dst_values): * dst_datai[i] = bcf_int32_missing if not vlen else bcf_int32_vector_end */ (__pyx_v_dst_datai[__pyx_v_i]) = (__pyx_v_src_datai32[__pyx_v_i]); } /* "pysam/libcbcf.pyx":488 * for i in range(src_values): * dst_datai[i] = src_datai32[i] * for i in range(src_values, dst_values): # <<<<<<<<<<<<<< * dst_datai[i] = bcf_int32_missing if not vlen else bcf_int32_vector_end * elif src_type == BCF_BT_FLOAT and dst_type == BCF_BT_FLOAT: */ __pyx_t_8 = __pyx_v_dst_values; __pyx_t_9 = __pyx_t_8; for (__pyx_t_10 = __pyx_v_src_values; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { __pyx_v_i = __pyx_t_10; /* "pysam/libcbcf.pyx":489 * dst_datai[i] = src_datai32[i] * for i in range(src_values, dst_values): * dst_datai[i] = bcf_int32_missing if not vlen else bcf_int32_vector_end # <<<<<<<<<<<<<< * elif src_type == BCF_BT_FLOAT and dst_type == BCF_BT_FLOAT: * src_dataf = <float *>src_data */ __pyx_t_1 = (!(__pyx_v_vlen != 0)); if (__pyx_t_1) { __pyx_t_12 = bcf_int32_missing; } else { __pyx_t_12 = bcf_int32_vector_end; } (__pyx_v_dst_datai[__pyx_v_i]) = __pyx_t_12; } /* "pysam/libcbcf.pyx":483 * for i in range(src_values, dst_values): * dst_datai[i] = bcf_int32_missing if not vlen else bcf_int32_vector_end * elif src_type == BCF_BT_INT32 and dst_type == BCF_BT_INT32: # <<<<<<<<<<<<<< * src_datai32 = <int32_t *>src_data * dst_datai = <int32_t *>dst_data */ goto __pyx_L4; } /* "pysam/libcbcf.pyx":490 * for i in range(src_values, dst_values): * dst_datai[i] = bcf_int32_missing if not vlen else bcf_int32_vector_end * elif src_type == BCF_BT_FLOAT and dst_type == BCF_BT_FLOAT: # <<<<<<<<<<<<<< * src_dataf = <float *>src_data * dst_dataf = <float *>dst_data */ __pyx_t_11 = (__pyx_v_src_type == BCF_BT_FLOAT); if (__pyx_t_11) { } else { __pyx_t_1 = __pyx_t_11; goto __pyx_L27_bool_binop_done; } __pyx_t_11 = (__pyx_v_dst_type == BCF_BT_FLOAT); __pyx_t_1 = __pyx_t_11; __pyx_L27_bool_binop_done:; if (likely(__pyx_t_1)) { /* "pysam/libcbcf.pyx":491 * dst_datai[i] = bcf_int32_missing if not vlen else bcf_int32_vector_end * elif src_type == BCF_BT_FLOAT and dst_type == BCF_BT_FLOAT: * src_dataf = <float *>src_data # <<<<<<<<<<<<<< * dst_dataf = <float *>dst_data * for i in range(src_values): */ __pyx_v_src_dataf = ((float *)__pyx_v_src_data); /* "pysam/libcbcf.pyx":492 * elif src_type == BCF_BT_FLOAT and dst_type == BCF_BT_FLOAT: * src_dataf = <float *>src_data * dst_dataf = <float *>dst_data # <<<<<<<<<<<<<< * for i in range(src_values): * dst_dataf[i] = src_dataf[i] */ __pyx_v_dst_dataf = ((float *)__pyx_v_dst_data); /* "pysam/libcbcf.pyx":493 * src_dataf = <float *>src_data * dst_dataf = <float *>dst_data * for i in range(src_values): # <<<<<<<<<<<<<< * dst_dataf[i] = src_dataf[i] * for i in range(src_values, dst_values): */ __pyx_t_8 = __pyx_v_src_values; __pyx_t_9 = __pyx_t_8; for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { __pyx_v_i = __pyx_t_10; /* "pysam/libcbcf.pyx":494 * dst_dataf = <float *>dst_data * for i in range(src_values): * dst_dataf[i] = src_dataf[i] # <<<<<<<<<<<<<< * for i in range(src_values, dst_values): * bcf_float_set(dst_dataf + i, bcf_float_missing if not vlen else bcf_float_vector_end) */ (__pyx_v_dst_dataf[__pyx_v_i]) = (__pyx_v_src_dataf[__pyx_v_i]); } /* "pysam/libcbcf.pyx":495 * for i in range(src_values): * dst_dataf[i] = src_dataf[i] * for i in range(src_values, dst_values): # <<<<<<<<<<<<<< * bcf_float_set(dst_dataf + i, bcf_float_missing if not vlen else bcf_float_vector_end) * else: */ __pyx_t_8 = __pyx_v_dst_values; 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if (__pyx_t_1) { /* "pysam/libcbcf.pyx":1090 * * if fmt0.type == BCF_BT_INT8: * data8 = <int8_t *>(fmt0.p + sample.index * fmt0.size) # <<<<<<<<<<<<<< * for i in range(fmt0.n): * if data8[i] == bcf_int8_vector_end: */ __pyx_v_data8 = ((int8_t *)(__pyx_v_fmt0->p + (__pyx_v_sample->index * __pyx_v_fmt0->size))); /* "pysam/libcbcf.pyx":1091 * if fmt0.type == BCF_BT_INT8: * data8 = <int8_t *>(fmt0.p + sample.index * fmt0.size) * for i in range(fmt0.n): # <<<<<<<<<<<<<< * if data8[i] == bcf_int8_vector_end: * break */ __pyx_t_8 = __pyx_v_fmt0->n; __pyx_t_9 = __pyx_t_8; for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { __pyx_v_i = __pyx_t_10; /* "pysam/libcbcf.pyx":1092 * data8 = <int8_t *>(fmt0.p + sample.index * fmt0.size) * for i in range(fmt0.n): * if data8[i] == bcf_int8_vector_end: # <<<<<<<<<<<<<< * break * elif data8[i] == bcf_int8_missing: */ __pyx_t_1 = ((__pyx_v_data8[__pyx_v_i]) == bcf_int8_vector_end); if (__pyx_t_1) { /* "pysam/libcbcf.pyx":1093 * for i in range(fmt0.n): * if data8[i] == bcf_int8_vector_end: * break # <<<<<<<<<<<<<< * elif data8[i] == bcf_int8_missing: * continue */ goto __pyx_L14_break; /* "pysam/libcbcf.pyx":1092 * data8 = <int8_t *>(fmt0.p + sample.index * fmt0.size) * for i in range(fmt0.n): * if data8[i] == bcf_int8_vector_end: # <<<<<<<<<<<<<< * break * elif data8[i] == bcf_int8_missing: */ } /* "pysam/libcbcf.pyx":1094 * if data8[i] == bcf_int8_vector_end: * break * elif data8[i] == bcf_int8_missing: # <<<<<<<<<<<<<< * continue * elif i and not bcf_gt_is_phased(data8[i]): */ __pyx_t_1 = ((__pyx_v_data8[__pyx_v_i]) == bcf_int8_missing); if (__pyx_t_1) { /* "pysam/libcbcf.pyx":1095 * break * elif data8[i] == bcf_int8_missing: * continue # <<<<<<<<<<<<<< * elif i and not bcf_gt_is_phased(data8[i]): * return False */ goto __pyx_L13_continue; /* "pysam/libcbcf.pyx":1094 * if data8[i] == bcf_int8_vector_end: * break * elif data8[i] == bcf_int8_missing: # <<<<<<<<<<<<<< * continue * elif i and not bcf_gt_is_phased(data8[i]): */ } /* "pysam/libcbcf.pyx":1096 * elif data8[i] == bcf_int8_missing: * continue * elif i and not bcf_gt_is_phased(data8[i]): # <<<<<<<<<<<<<< * return False * else: */ __pyx_t_6 = (__pyx_v_i != 0); if (__pyx_t_6) { } else { __pyx_t_1 = __pyx_t_6; goto __pyx_L16_bool_binop_done; } __pyx_t_6 = (!(bcf_gt_is_phased((__pyx_v_data8[__pyx_v_i])) != 0)); __pyx_t_1 = __pyx_t_6; __pyx_L16_bool_binop_done:; if (__pyx_t_1) { /* "pysam/libcbcf.pyx":1097 * continue * elif i and not bcf_gt_is_phased(data8[i]): * return False # <<<<<<<<<<<<<< * else: * phased = True */ __pyx_r = 0; goto __pyx_L0; /* "pysam/libcbcf.pyx":1096 * elif data8[i] == bcf_int8_missing: * continue * elif i and not bcf_gt_is_phased(data8[i]): # <<<<<<<<<<<<<< * return False * else: */ } /* "pysam/libcbcf.pyx":1099 * return False * else: * phased = True # <<<<<<<<<<<<<< * elif fmt0.type == BCF_BT_INT16: * data16 = <int16_t *>(fmt0.p + sample.index * fmt0.size) */ /*else*/ { __pyx_v_phased = 1; } __pyx_L13_continue:; } __pyx_L14_break:; /* "pysam/libcbcf.pyx":1089 * cdef bint phased = False * * if fmt0.type == BCF_BT_INT8: # <<<<<<<<<<<<<< * data8 = <int8_t *>(fmt0.p + sample.index * fmt0.size) * for i in range(fmt0.n): */ goto __pyx_L12; } /* "pysam/libcbcf.pyx":1100 * else: * phased = True * elif fmt0.type == BCF_BT_INT16: # <<<<<<<<<<<<<< * data16 = <int16_t *>(fmt0.p + sample.index * fmt0.size) * for i in range(fmt0.n): */ __pyx_t_1 = (__pyx_v_fmt0->type == BCF_BT_INT16); if (__pyx_t_1) { /* "pysam/libcbcf.pyx":1101 * phased = True * elif fmt0.type == BCF_BT_INT16: * data16 = <int16_t *>(fmt0.p + sample.index * fmt0.size) # <<<<<<<<<<<<<< * for i in range(fmt0.n): * if data16[i] == bcf_int16_vector_end: */ __pyx_v_data16 = ((int16_t *)(__pyx_v_fmt0->p + (__pyx_v_sample->index * __pyx_v_fmt0->size))); /* "pysam/libcbcf.pyx":1102 * elif fmt0.type == BCF_BT_INT16: * data16 = <int16_t *>(fmt0.p + sample.index * fmt0.size) * for i in range(fmt0.n): # <<<<<<<<<<<<<< * if data16[i] == bcf_int16_vector_end: * break */ __pyx_t_8 = __pyx_v_fmt0->n; __pyx_t_9 = __pyx_t_8; for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { __pyx_v_i = __pyx_t_10; /* "pysam/libcbcf.pyx":1103 * data16 = <int16_t *>(fmt0.p + sample.index * fmt0.size) * for i in range(fmt0.n): * if data16[i] == bcf_int16_vector_end: # <<<<<<<<<<<<<< * break * elif data16[i] == bcf_int16_missing: */ __pyx_t_1 = ((__pyx_v_data16[__pyx_v_i]) == bcf_int16_vector_end); if (__pyx_t_1) { /* "pysam/libcbcf.pyx":1104 * for i in range(fmt0.n): * if data16[i] == bcf_int16_vector_end: * break # <<<<<<<<<<<<<< * elif data16[i] == bcf_int16_missing: * continue */ goto __pyx_L19_break; /* "pysam/libcbcf.pyx":1103 * data16 = <int16_t *>(fmt0.p + sample.index * fmt0.size) * for i in range(fmt0.n): * if data16[i] == bcf_int16_vector_end: # <<<<<<<<<<<<<< * break * elif data16[i] == bcf_int16_missing: */ } /* "pysam/libcbcf.pyx":1105 * if data16[i] == bcf_int16_vector_end: * break * elif data16[i] == bcf_int16_missing: # <<<<<<<<<<<<<< * continue * elif i and not bcf_gt_is_phased(data16[i]): */ __pyx_t_1 = ((__pyx_v_data16[__pyx_v_i]) == bcf_int16_missing); if (__pyx_t_1) { /* "pysam/libcbcf.pyx":1106 * break * elif data16[i] == bcf_int16_missing: * continue # <<<<<<<<<<<<<< * elif i and not bcf_gt_is_phased(data16[i]): * return False */ goto __pyx_L18_continue; /* "pysam/libcbcf.pyx":1105 * if data16[i] == bcf_int16_vector_end: * break * elif data16[i] == bcf_int16_missing: # <<<<<<<<<<<<<< * continue * elif i and not bcf_gt_is_phased(data16[i]): */ } /* "pysam/libcbcf.pyx":1107 * elif data16[i] == bcf_int16_missing: * continue * elif i and not bcf_gt_is_phased(data16[i]): # <<<<<<<<<<<<<< * return False * else: */ __pyx_t_6 = (__pyx_v_i != 0); if (__pyx_t_6) { } else { __pyx_t_1 = __pyx_t_6; goto __pyx_L21_bool_binop_done; } __pyx_t_6 = (!(bcf_gt_is_phased((__pyx_v_data16[__pyx_v_i])) != 0)); __pyx_t_1 = __pyx_t_6; __pyx_L21_bool_binop_done:; if (__pyx_t_1) { /* "pysam/libcbcf.pyx":1108 * continue * elif i and not bcf_gt_is_phased(data16[i]): * return False # <<<<<<<<<<<<<< * else: * phased = True */ __pyx_r = 0; goto __pyx_L0; /* "pysam/libcbcf.pyx":1107 * elif data16[i] == bcf_int16_missing: * continue * elif i and not bcf_gt_is_phased(data16[i]): # <<<<<<<<<<<<<< * return False * else: */ } /* "pysam/libcbcf.pyx":1110 * return False * else: * phased = True # <<<<<<<<<<<<<< * elif fmt0.type == BCF_BT_INT32: * data32 = <int32_t *>(fmt0.p + sample.index * fmt0.size) */ /*else*/ { __pyx_v_phased = 1; } __pyx_L18_continue:; } __pyx_L19_break:; /* "pysam/libcbcf.pyx":1100 * else: * phased = True * elif fmt0.type == BCF_BT_INT16: # <<<<<<<<<<<<<< * data16 = <int16_t *>(fmt0.p + sample.index * fmt0.size) * for i in range(fmt0.n): */ goto __pyx_L12; } /* "pysam/libcbcf.pyx":1111 * else: * phased = True * elif fmt0.type == BCF_BT_INT32: # <<<<<<<<<<<<<< * data32 = <int32_t *>(fmt0.p + sample.index * fmt0.size) * for i in range(fmt0.n): */ __pyx_t_1 = (__pyx_v_fmt0->type == BCF_BT_INT32); if (__pyx_t_1) { /* "pysam/libcbcf.pyx":1112 * phased = True * elif fmt0.type == BCF_BT_INT32: * data32 = <int32_t *>(fmt0.p + sample.index * fmt0.size) # <<<<<<<<<<<<<< * for i in range(fmt0.n): * if data32[i] == bcf_int32_vector_end: */ __pyx_v_data32 = ((int32_t *)(__pyx_v_fmt0->p + (__pyx_v_sample->index * __pyx_v_fmt0->size))); /* "pysam/libcbcf.pyx":1113 * elif fmt0.type == BCF_BT_INT32: * data32 = <int32_t *>(fmt0.p + sample.index * fmt0.size) * for i in range(fmt0.n): # <<<<<<<<<<<<<< * if data32[i] == bcf_int32_vector_end: * break */ __pyx_t_8 = __pyx_v_fmt0->n; __pyx_t_9 = __pyx_t_8; for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { __pyx_v_i = __pyx_t_10; /* "pysam/libcbcf.pyx":1114 * data32 = <int32_t *>(fmt0.p + sample.index * fmt0.size) * for i in range(fmt0.n): * if data32[i] == bcf_int32_vector_end: # <<<<<<<<<<<<<< * break * elif data32[i] == bcf_int32_missing: */ __pyx_t_1 = ((__pyx_v_data32[__pyx_v_i]) == bcf_int32_vector_end); 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} else { o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); } if (unlikely(!o)) return 0; #endif p = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeader *)o); p->__pyx_vtab = __pyx_vtabptr_5pysam_7libcbcf_VariantHeader; if (unlikely(__pyx_pw_5pysam_7libcbcf_13VariantHeader_1__cinit__(o, __pyx_empty_tuple, NULL) < 0)) goto bad; return o; bad: Py_DECREF(o); o = 0; return NULL; } static void __pyx_tp_dealloc_5pysam_7libcbcf_VariantHeader(PyObject *o) { #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && (!PyType_IS_GC(Py_TYPE(o)) || !__Pyx_PyObject_GC_IsFinalized(o))) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf_VariantHeader) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif { PyObject *etype, *eval, *etb; PyErr_Fetch(&etype, &eval, &etb); __Pyx_SET_REFCNT(o, Py_REFCNT(o) + 1); __pyx_pw_5pysam_7libcbcf_13VariantHeader_5__dealloc__(o); __Pyx_SET_REFCNT(o, Py_REFCNT(o) - 1); PyErr_Restore(etype, eval, etb); } #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantHeader_version(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantHeader_7version_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantHeader_samples(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantHeader_7samples_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantHeader_records(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantHeader_7records_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantHeader_contigs(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantHeader_7contigs_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantHeader_filters(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantHeader_7filters_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantHeader_info(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantHeader_4info_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantHeader_formats(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantHeader_7formats_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantHeader_alts(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantHeader_4alts_1__get__(o); } static PyMethodDef __pyx_methods_5pysam_7libcbcf_VariantHeader[] = { {"copy", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_13VariantHeader_9copy, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_13VariantHeader_8copy}, {"merge", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_13VariantHeader_11merge, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_13VariantHeader_10merge}, {"new_record", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_13VariantHeader_15new_record, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_13VariantHeader_14new_record}, {"add_record", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_13VariantHeader_17add_record, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_13VariantHeader_16add_record}, {"add_line", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_13VariantHeader_19add_line, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_13VariantHeader_18add_line}, {"add_meta", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_13VariantHeader_21add_meta, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_13VariantHeader_20add_meta}, {"add_sample", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_13VariantHeader_23add_sample, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_13VariantHeader_22add_sample}, {"add_samples", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5pysam_7libcbcf_13VariantHeader_25add_samples, METH_VARARGS|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_13VariantHeader_24add_samples}, {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_13VariantHeader_27__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_13VariantHeader_26__reduce_cython__}, {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_13VariantHeader_29__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_13VariantHeader_28__setstate_cython__}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5pysam_7libcbcf_VariantHeader[] = { {(char *)"version", __pyx_getprop_5pysam_7libcbcf_13VariantHeader_version, 0, (char *)PyDoc_STR("VCF version"), 0}, {(char *)"samples", __pyx_getprop_5pysam_7libcbcf_13VariantHeader_samples, 0, (char *)PyDoc_STR("samples (:class:`VariantHeaderSamples`)"), 0}, {(char *)"records", __pyx_getprop_5pysam_7libcbcf_13VariantHeader_records, 0, (char *)PyDoc_STR("header records (:class:`VariantHeaderRecords`)"), 0}, {(char *)"contigs", __pyx_getprop_5pysam_7libcbcf_13VariantHeader_contigs, 0, (char *)PyDoc_STR("contig information (:class:`VariantHeaderContigs`)"), 0}, {(char *)"filters", __pyx_getprop_5pysam_7libcbcf_13VariantHeader_filters, 0, (char *)PyDoc_STR("filter metadata (:class:`VariantHeaderMetadata`)"), 0}, {(char *)"info", __pyx_getprop_5pysam_7libcbcf_13VariantHeader_info, 0, (char *)PyDoc_STR("info metadata (:class:`VariantHeaderMetadata`)"), 0}, {(char *)"formats", __pyx_getprop_5pysam_7libcbcf_13VariantHeader_formats, 0, (char *)PyDoc_STR("format metadata (:class:`VariantHeaderMetadata`)"), 0}, {(char *)"alts", __pyx_getprop_5pysam_7libcbcf_13VariantHeader_alts, 0, (char *)PyDoc_STR("alt metadata (:class:`dict` ID->record).\n\n The data returned just a snapshot of alt records, is created\n every time the property is requested, and modifications will\n not be reflected in the header metadata and vice versa.\n\n i.e. it is just a dict that reflects the state of alt records\n at the time it is created.\n "), 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf_VariantHeader_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf_VariantHeader}, {Py_nb_bool, (void *)__pyx_pw_5pysam_7libcbcf_13VariantHeader_7__bool__}, {Py_tp_str, (void *)__pyx_pw_5pysam_7libcbcf_13VariantHeader_13__str__}, {Py_tp_doc, (void *)PyDoc_STR("VariantHeader()\nheader information for a :class:`VariantFile` object")}, {Py_tp_methods, (void *)__pyx_methods_5pysam_7libcbcf_VariantHeader}, {Py_tp_getset, (void *)__pyx_getsets_5pysam_7libcbcf_VariantHeader}, {Py_tp_init, (void *)__pyx_pw_5pysam_7libcbcf_13VariantHeader_3__init__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf_VariantHeader}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf_VariantHeader_spec = { "pysam.libcbcf.VariantHeader", sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantHeader), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, __pyx_type_5pysam_7libcbcf_VariantHeader_slots, }; #else static PyNumberMethods __pyx_tp_as_number_VariantHeader = { 0, /*nb_add*/ 0, /*nb_subtract*/ 0, /*nb_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_divide*/ #endif 0, /*nb_remainder*/ 0, /*nb_divmod*/ 0, /*nb_power*/ 0, /*nb_negative*/ 0, /*nb_positive*/ 0, /*nb_absolute*/ __pyx_pw_5pysam_7libcbcf_13VariantHeader_7__bool__, /*nb_bool*/ 0, /*nb_invert*/ 0, /*nb_lshift*/ 0, /*nb_rshift*/ 0, /*nb_and*/ 0, /*nb_xor*/ 0, /*nb_or*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_coerce*/ #endif 0, /*nb_int*/ #if PY_MAJOR_VERSION < 3 0, /*nb_long*/ #else 0, /*reserved*/ #endif 0, /*nb_float*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_oct*/ #endif #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_hex*/ #endif 0, /*nb_inplace_add*/ 0, /*nb_inplace_subtract*/ 0, /*nb_inplace_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_inplace_divide*/ #endif 0, /*nb_inplace_remainder*/ 0, /*nb_inplace_power*/ 0, /*nb_inplace_lshift*/ 0, /*nb_inplace_rshift*/ 0, /*nb_inplace_and*/ 0, /*nb_inplace_xor*/ 0, /*nb_inplace_or*/ 0, /*nb_floor_divide*/ 0, /*nb_true_divide*/ 0, /*nb_inplace_floor_divide*/ 0, /*nb_inplace_true_divide*/ 0, /*nb_index*/ #if PY_VERSION_HEX >= 0x03050000 0, /*nb_matrix_multiply*/ #endif #if PY_VERSION_HEX >= 0x03050000 0, /*nb_inplace_matrix_multiply*/ #endif }; static PyTypeObject __pyx_type_5pysam_7libcbcf_VariantHeader = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""VariantHeader", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantHeader), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf_VariantHeader, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ &__pyx_tp_as_number_VariantHeader, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ __pyx_pw_5pysam_7libcbcf_13VariantHeader_13__str__, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/ PyDoc_STR("VariantHeader()\nheader information for a :class:`VariantFile` object"), /*tp_doc*/ 0, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5pysam_7libcbcf_VariantHeader, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5pysam_7libcbcf_VariantHeader, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5pysam_7libcbcf_13VariantHeader_3__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf_VariantHeader, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantHeaderRecord(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *p; PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else if (likely(!__Pyx_PyType_HasFeature(t, Py_TPFLAGS_IS_ABSTRACT))) { o = (*t->tp_alloc)(t, 0); } else { o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); } if (unlikely(!o)) return 0; #endif p = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *)o); p->header = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeader *)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf_VariantHeaderRecord(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *p = (struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf_VariantHeaderRecord) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->header); #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } static int __pyx_tp_traverse_5pysam_7libcbcf_VariantHeaderRecord(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *p = (struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *)o; if (p->header) { e = (*v)(((PyObject *)p->header), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5pysam_7libcbcf_VariantHeaderRecord(PyObject *o) { PyObject* tmp; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *p = (struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord *)o; tmp = ((PyObject*)p->header); p->header = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeader *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_sq_item_5pysam_7libcbcf_VariantHeaderRecord(PyObject *o, Py_ssize_t i) { PyObject *r; PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0; r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x); Py_DECREF(x); return r; } static PyObject *__pyx_getprop_5pysam_7libcbcf_19VariantHeaderRecord_type(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_4type_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_19VariantHeaderRecord_key(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_3key_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_19VariantHeaderRecord_value(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_5value_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_19VariantHeaderRecord_attrs(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_5attrs_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_19VariantHeaderRecord_header(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_6header_1__get__(o); } static PyMethodDef __pyx_methods_5pysam_7libcbcf_VariantHeaderRecord[] = { {"get", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_12get, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantHeaderRecord_11get}, {"iterkeys", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_16iterkeys, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantHeaderRecord_15iterkeys}, {"itervalues", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_18itervalues, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantHeaderRecord_17itervalues}, {"iteritems", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_21iteritems, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantHeaderRecord_20iteritems}, {"keys", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_24keys, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantHeaderRecord_23keys}, {"items", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_26items, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantHeaderRecord_25items}, {"values", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_28values, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantHeaderRecord_27values}, {"update", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_30update, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantHeaderRecord_29update}, {"pop", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_32pop, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantHeaderRecord_31pop}, {"remove", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_36remove, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantHeaderRecord_35remove}, {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_38__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantHeaderRecord_37__reduce_cython__}, {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_40__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantHeaderRecord_39__setstate_cython__}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5pysam_7libcbcf_VariantHeaderRecord[] = { {(char *)"type", __pyx_getprop_5pysam_7libcbcf_19VariantHeaderRecord_type, 0, (char *)PyDoc_STR("header type: FILTER, INFO, FORMAT, CONTIG, STRUCTURED, or GENERIC"), 0}, {(char *)"key", __pyx_getprop_5pysam_7libcbcf_19VariantHeaderRecord_key, 0, (char *)PyDoc_STR("header key (the part before '=', in FILTER/INFO/FORMAT/contig/fileformat etc.)"), 0}, {(char *)"value", __pyx_getprop_5pysam_7libcbcf_19VariantHeaderRecord_value, 0, (char *)PyDoc_STR("header value. Set only for generic lines, None for FILTER/INFO, etc."), 0}, {(char *)"attrs", __pyx_getprop_5pysam_7libcbcf_19VariantHeaderRecord_attrs, 0, (char *)PyDoc_STR("sequence of additional header attributes"), 0}, {(char *)"header", __pyx_getprop_5pysam_7libcbcf_19VariantHeaderRecord_header, 0, (char *)0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf_VariantHeaderRecord_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf_VariantHeaderRecord}, {Py_nb_bool, (void *)__pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_5__bool__}, {Py_sq_length, (void *)__pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_3__len__}, {Py_sq_item, (void *)__pyx_sq_item_5pysam_7libcbcf_VariantHeaderRecord}, {Py_sq_contains, (void *)__pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_14__contains__}, {Py_mp_length, (void *)__pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_3__len__}, {Py_mp_subscript, (void *)__pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_7__getitem__}, {Py_tp_str, (void *)__pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_34__str__}, {Py_tp_doc, (void *)PyDoc_STR("VariantHeaderRecord(*args, **kwargs)\nheader record from a :class:`VariantHeader` object")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf_VariantHeaderRecord}, {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_7libcbcf_VariantHeaderRecord}, {Py_tp_iter, (void *)__pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_9__iter__}, {Py_tp_methods, (void *)__pyx_methods_5pysam_7libcbcf_VariantHeaderRecord}, {Py_tp_getset, (void *)__pyx_getsets_5pysam_7libcbcf_VariantHeaderRecord}, {Py_tp_init, (void *)__pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf_VariantHeaderRecord}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf_VariantHeaderRecord_spec = { "pysam.libcbcf.VariantHeaderRecord", sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5pysam_7libcbcf_VariantHeaderRecord_slots, }; #else static PyNumberMethods __pyx_tp_as_number_VariantHeaderRecord = { 0, /*nb_add*/ 0, /*nb_subtract*/ 0, /*nb_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_divide*/ #endif 0, /*nb_remainder*/ 0, /*nb_divmod*/ 0, /*nb_power*/ 0, /*nb_negative*/ 0, /*nb_positive*/ 0, /*nb_absolute*/ __pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_5__bool__, /*nb_bool*/ 0, /*nb_invert*/ 0, /*nb_lshift*/ 0, /*nb_rshift*/ 0, /*nb_and*/ 0, /*nb_xor*/ 0, /*nb_or*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_coerce*/ #endif 0, /*nb_int*/ #if PY_MAJOR_VERSION < 3 0, /*nb_long*/ #else 0, /*reserved*/ #endif 0, /*nb_float*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_oct*/ #endif #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_hex*/ #endif 0, /*nb_inplace_add*/ 0, /*nb_inplace_subtract*/ 0, /*nb_inplace_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_inplace_divide*/ #endif 0, /*nb_inplace_remainder*/ 0, /*nb_inplace_power*/ 0, /*nb_inplace_lshift*/ 0, /*nb_inplace_rshift*/ 0, /*nb_inplace_and*/ 0, /*nb_inplace_xor*/ 0, /*nb_inplace_or*/ 0, /*nb_floor_divide*/ 0, /*nb_true_divide*/ 0, /*nb_inplace_floor_divide*/ 0, /*nb_inplace_true_divide*/ 0, /*nb_index*/ #if PY_VERSION_HEX >= 0x03050000 0, /*nb_matrix_multiply*/ #endif #if PY_VERSION_HEX >= 0x03050000 0, /*nb_inplace_matrix_multiply*/ #endif }; static PySequenceMethods __pyx_tp_as_sequence_VariantHeaderRecord = { __pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_3__len__, /*sq_length*/ 0, /*sq_concat*/ 0, /*sq_repeat*/ __pyx_sq_item_5pysam_7libcbcf_VariantHeaderRecord, /*sq_item*/ 0, /*sq_slice*/ 0, /*sq_ass_item*/ 0, /*sq_ass_slice*/ __pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_14__contains__, /*sq_contains*/ 0, /*sq_inplace_concat*/ 0, /*sq_inplace_repeat*/ }; static PyMappingMethods __pyx_tp_as_mapping_VariantHeaderRecord = { __pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_3__len__, /*mp_length*/ __pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_7__getitem__, /*mp_subscript*/ 0, /*mp_ass_subscript*/ }; static PyTypeObject __pyx_type_5pysam_7libcbcf_VariantHeaderRecord = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""VariantHeaderRecord", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecord), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf_VariantHeaderRecord, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ &__pyx_tp_as_number_VariantHeaderRecord, /*tp_as_number*/ &__pyx_tp_as_sequence_VariantHeaderRecord, /*tp_as_sequence*/ &__pyx_tp_as_mapping_VariantHeaderRecord, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ __pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_34__str__, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("VariantHeaderRecord(*args, **kwargs)\nheader record from a :class:`VariantHeader` object"), /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf_VariantHeaderRecord, /*tp_traverse*/ __pyx_tp_clear_5pysam_7libcbcf_VariantHeaderRecord, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ __pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_9__iter__, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5pysam_7libcbcf_VariantHeaderRecord, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5pysam_7libcbcf_VariantHeaderRecord, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5pysam_7libcbcf_19VariantHeaderRecord_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf_VariantHeaderRecord, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantHeaderRecords(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords *p; PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else if (likely(!__Pyx_PyType_HasFeature(t, Py_TPFLAGS_IS_ABSTRACT))) { o = (*t->tp_alloc)(t, 0); } else { o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); } if (unlikely(!o)) return 0; #endif p = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords *)o); p->header = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeader *)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf_VariantHeaderRecords(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords *p = (struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf_VariantHeaderRecords) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->header); #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } static int __pyx_tp_traverse_5pysam_7libcbcf_VariantHeaderRecords(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords *p = (struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords *)o; if (p->header) { e = (*v)(((PyObject *)p->header), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5pysam_7libcbcf_VariantHeaderRecords(PyObject *o) { PyObject* tmp; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords *p = (struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords *)o; tmp = ((PyObject*)p->header); p->header = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeader *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_sq_item_5pysam_7libcbcf_VariantHeaderRecords(PyObject *o, Py_ssize_t i) { PyObject *r; PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0; r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x); Py_DECREF(x); return r; } static PyObject *__pyx_getprop_5pysam_7libcbcf_20VariantHeaderRecords_header(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_20VariantHeaderRecords_6header_1__get__(o); } static PyMethodDef __pyx_methods_5pysam_7libcbcf_VariantHeaderRecords[] = { {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantHeaderRecords_12__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantHeaderRecords_11__reduce_cython__}, {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantHeaderRecords_14__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantHeaderRecords_13__setstate_cython__}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5pysam_7libcbcf_VariantHeaderRecords[] = { {(char *)"header", __pyx_getprop_5pysam_7libcbcf_20VariantHeaderRecords_header, 0, (char *)0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf_VariantHeaderRecords_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf_VariantHeaderRecords}, {Py_nb_bool, (void *)__pyx_pw_5pysam_7libcbcf_20VariantHeaderRecords_5__bool__}, {Py_sq_length, (void *)__pyx_pw_5pysam_7libcbcf_20VariantHeaderRecords_3__len__}, {Py_sq_item, (void *)__pyx_sq_item_5pysam_7libcbcf_VariantHeaderRecords}, {Py_mp_length, (void *)__pyx_pw_5pysam_7libcbcf_20VariantHeaderRecords_3__len__}, {Py_mp_subscript, (void *)__pyx_pw_5pysam_7libcbcf_20VariantHeaderRecords_7__getitem__}, {Py_tp_doc, (void *)PyDoc_STR("VariantHeaderRecords(*args, **kwargs)\nsequence of :class:`VariantHeaderRecord` object from a :class:`VariantHeader` object")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf_VariantHeaderRecords}, {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_7libcbcf_VariantHeaderRecords}, {Py_tp_iter, (void *)__pyx_pw_5pysam_7libcbcf_20VariantHeaderRecords_9__iter__}, {Py_tp_methods, (void *)__pyx_methods_5pysam_7libcbcf_VariantHeaderRecords}, {Py_tp_getset, (void *)__pyx_getsets_5pysam_7libcbcf_VariantHeaderRecords}, {Py_tp_init, (void *)__pyx_pw_5pysam_7libcbcf_20VariantHeaderRecords_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf_VariantHeaderRecords}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf_VariantHeaderRecords_spec = { "pysam.libcbcf.VariantHeaderRecords", sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5pysam_7libcbcf_VariantHeaderRecords_slots, }; #else static PyNumberMethods __pyx_tp_as_number_VariantHeaderRecords = { 0, /*nb_add*/ 0, /*nb_subtract*/ 0, /*nb_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_divide*/ #endif 0, /*nb_remainder*/ 0, /*nb_divmod*/ 0, /*nb_power*/ 0, /*nb_negative*/ 0, /*nb_positive*/ 0, /*nb_absolute*/ __pyx_pw_5pysam_7libcbcf_20VariantHeaderRecords_5__bool__, /*nb_bool*/ 0, /*nb_invert*/ 0, /*nb_lshift*/ 0, /*nb_rshift*/ 0, /*nb_and*/ 0, /*nb_xor*/ 0, /*nb_or*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_coerce*/ #endif 0, /*nb_int*/ #if PY_MAJOR_VERSION < 3 0, /*nb_long*/ #else 0, /*reserved*/ #endif 0, /*nb_float*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_oct*/ #endif #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_hex*/ #endif 0, /*nb_inplace_add*/ 0, /*nb_inplace_subtract*/ 0, /*nb_inplace_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_inplace_divide*/ #endif 0, /*nb_inplace_remainder*/ 0, /*nb_inplace_power*/ 0, /*nb_inplace_lshift*/ 0, /*nb_inplace_rshift*/ 0, /*nb_inplace_and*/ 0, /*nb_inplace_xor*/ 0, /*nb_inplace_or*/ 0, /*nb_floor_divide*/ 0, /*nb_true_divide*/ 0, /*nb_inplace_floor_divide*/ 0, /*nb_inplace_true_divide*/ 0, /*nb_index*/ #if PY_VERSION_HEX >= 0x03050000 0, /*nb_matrix_multiply*/ #endif #if PY_VERSION_HEX >= 0x03050000 0, /*nb_inplace_matrix_multiply*/ #endif }; static PySequenceMethods __pyx_tp_as_sequence_VariantHeaderRecords = { __pyx_pw_5pysam_7libcbcf_20VariantHeaderRecords_3__len__, /*sq_length*/ 0, /*sq_concat*/ 0, /*sq_repeat*/ __pyx_sq_item_5pysam_7libcbcf_VariantHeaderRecords, /*sq_item*/ 0, /*sq_slice*/ 0, /*sq_ass_item*/ 0, /*sq_ass_slice*/ 0, /*sq_contains*/ 0, /*sq_inplace_concat*/ 0, /*sq_inplace_repeat*/ }; static PyMappingMethods __pyx_tp_as_mapping_VariantHeaderRecords = { __pyx_pw_5pysam_7libcbcf_20VariantHeaderRecords_3__len__, /*mp_length*/ __pyx_pw_5pysam_7libcbcf_20VariantHeaderRecords_7__getitem__, /*mp_subscript*/ 0, /*mp_ass_subscript*/ }; static PyTypeObject __pyx_type_5pysam_7libcbcf_VariantHeaderRecords = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""VariantHeaderRecords", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderRecords), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf_VariantHeaderRecords, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ &__pyx_tp_as_number_VariantHeaderRecords, /*tp_as_number*/ &__pyx_tp_as_sequence_VariantHeaderRecords, /*tp_as_sequence*/ &__pyx_tp_as_mapping_VariantHeaderRecords, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("VariantHeaderRecords(*args, **kwargs)\nsequence of :class:`VariantHeaderRecord` object from a :class:`VariantHeader` object"), /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf_VariantHeaderRecords, /*tp_traverse*/ __pyx_tp_clear_5pysam_7libcbcf_VariantHeaderRecords, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ __pyx_pw_5pysam_7libcbcf_20VariantHeaderRecords_9__iter__, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5pysam_7libcbcf_VariantHeaderRecords, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5pysam_7libcbcf_VariantHeaderRecords, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5pysam_7libcbcf_20VariantHeaderRecords_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf_VariantHeaderRecords, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantHeaderContigs(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *p; PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else if (likely(!__Pyx_PyType_HasFeature(t, Py_TPFLAGS_IS_ABSTRACT))) { o = (*t->tp_alloc)(t, 0); } else { o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); } if (unlikely(!o)) return 0; #endif p = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *)o); p->header = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeader *)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf_VariantHeaderContigs(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *p = (struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf_VariantHeaderContigs) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->header); #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } static int __pyx_tp_traverse_5pysam_7libcbcf_VariantHeaderContigs(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *p = (struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *)o; if (p->header) { e = (*v)(((PyObject *)p->header), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5pysam_7libcbcf_VariantHeaderContigs(PyObject *o) { PyObject* tmp; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *p = (struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs *)o; tmp = ((PyObject*)p->header); p->header = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeader *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_sq_item_5pysam_7libcbcf_VariantHeaderContigs(PyObject *o, Py_ssize_t i) { PyObject *r; PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0; r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x); Py_DECREF(x); return r; } static PyObject *__pyx_getprop_5pysam_7libcbcf_20VariantHeaderContigs_header(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_6header_1__get__(o); } static PyMethodDef __pyx_methods_5pysam_7libcbcf_VariantHeaderContigs[] = { {"remove_header", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_9remove_header, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantHeaderContigs_8remove_header}, {"clear_header", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_11clear_header, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantHeaderContigs_10clear_header}, {"get", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_16get, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantHeaderContigs_15get}, {"iterkeys", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_20iterkeys, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantHeaderContigs_19iterkeys}, {"itervalues", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_22itervalues, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantHeaderContigs_21itervalues}, {"iteritems", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_25iteritems, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantHeaderContigs_24iteritems}, {"keys", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_28keys, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantHeaderContigs_27keys}, {"items", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_30items, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantHeaderContigs_29items}, {"values", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_32values, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantHeaderContigs_31values}, {"add", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_34add, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantHeaderContigs_33add}, {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_36__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantHeaderContigs_35__reduce_cython__}, {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_38__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantHeaderContigs_37__setstate_cython__}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5pysam_7libcbcf_VariantHeaderContigs[] = { {(char *)"header", __pyx_getprop_5pysam_7libcbcf_20VariantHeaderContigs_header, 0, (char *)0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf_VariantHeaderContigs_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf_VariantHeaderContigs}, {Py_nb_bool, (void *)__pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_5__bool__}, {Py_sq_length, (void *)__pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_3__len__}, {Py_sq_item, (void *)__pyx_sq_item_5pysam_7libcbcf_VariantHeaderContigs}, {Py_sq_contains, (void *)__pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_18__contains__}, {Py_mp_length, (void *)__pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_3__len__}, {Py_mp_subscript, (void *)__pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_7__getitem__}, {Py_tp_doc, (void *)PyDoc_STR("VariantHeaderContigs(*args, **kwargs)\nmapping from contig name or index to :class:`VariantContig` object.")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf_VariantHeaderContigs}, {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_7libcbcf_VariantHeaderContigs}, {Py_tp_iter, (void *)__pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_13__iter__}, {Py_tp_methods, (void *)__pyx_methods_5pysam_7libcbcf_VariantHeaderContigs}, {Py_tp_getset, (void *)__pyx_getsets_5pysam_7libcbcf_VariantHeaderContigs}, {Py_tp_init, (void *)__pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf_VariantHeaderContigs}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf_VariantHeaderContigs_spec = { "pysam.libcbcf.VariantHeaderContigs", sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5pysam_7libcbcf_VariantHeaderContigs_slots, }; #else static PyNumberMethods __pyx_tp_as_number_VariantHeaderContigs = { 0, /*nb_add*/ 0, /*nb_subtract*/ 0, /*nb_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_divide*/ #endif 0, /*nb_remainder*/ 0, /*nb_divmod*/ 0, /*nb_power*/ 0, /*nb_negative*/ 0, /*nb_positive*/ 0, /*nb_absolute*/ __pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_5__bool__, /*nb_bool*/ 0, /*nb_invert*/ 0, /*nb_lshift*/ 0, /*nb_rshift*/ 0, /*nb_and*/ 0, /*nb_xor*/ 0, /*nb_or*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_coerce*/ #endif 0, /*nb_int*/ #if PY_MAJOR_VERSION < 3 0, /*nb_long*/ #else 0, /*reserved*/ #endif 0, /*nb_float*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_oct*/ #endif #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_hex*/ #endif 0, /*nb_inplace_add*/ 0, /*nb_inplace_subtract*/ 0, /*nb_inplace_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_inplace_divide*/ #endif 0, /*nb_inplace_remainder*/ 0, /*nb_inplace_power*/ 0, /*nb_inplace_lshift*/ 0, /*nb_inplace_rshift*/ 0, /*nb_inplace_and*/ 0, /*nb_inplace_xor*/ 0, /*nb_inplace_or*/ 0, /*nb_floor_divide*/ 0, /*nb_true_divide*/ 0, /*nb_inplace_floor_divide*/ 0, /*nb_inplace_true_divide*/ 0, /*nb_index*/ #if PY_VERSION_HEX >= 0x03050000 0, /*nb_matrix_multiply*/ #endif #if PY_VERSION_HEX >= 0x03050000 0, /*nb_inplace_matrix_multiply*/ #endif }; static PySequenceMethods __pyx_tp_as_sequence_VariantHeaderContigs = { __pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_3__len__, /*sq_length*/ 0, /*sq_concat*/ 0, /*sq_repeat*/ __pyx_sq_item_5pysam_7libcbcf_VariantHeaderContigs, /*sq_item*/ 0, /*sq_slice*/ 0, /*sq_ass_item*/ 0, /*sq_ass_slice*/ __pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_18__contains__, /*sq_contains*/ 0, /*sq_inplace_concat*/ 0, /*sq_inplace_repeat*/ }; static PyMappingMethods __pyx_tp_as_mapping_VariantHeaderContigs = { __pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_3__len__, /*mp_length*/ __pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_7__getitem__, /*mp_subscript*/ 0, /*mp_ass_subscript*/ }; static PyTypeObject __pyx_type_5pysam_7libcbcf_VariantHeaderContigs = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""VariantHeaderContigs", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderContigs), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf_VariantHeaderContigs, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ &__pyx_tp_as_number_VariantHeaderContigs, /*tp_as_number*/ &__pyx_tp_as_sequence_VariantHeaderContigs, /*tp_as_sequence*/ &__pyx_tp_as_mapping_VariantHeaderContigs, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("VariantHeaderContigs(*args, **kwargs)\nmapping from contig name or index to :class:`VariantContig` object."), /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf_VariantHeaderContigs, /*tp_traverse*/ __pyx_tp_clear_5pysam_7libcbcf_VariantHeaderContigs, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ __pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_13__iter__, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5pysam_7libcbcf_VariantHeaderContigs, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5pysam_7libcbcf_VariantHeaderContigs, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5pysam_7libcbcf_20VariantHeaderContigs_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf_VariantHeaderContigs, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantHeaderSamples(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples *p; PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else if (likely(!__Pyx_PyType_HasFeature(t, Py_TPFLAGS_IS_ABSTRACT))) { o = (*t->tp_alloc)(t, 0); } else { o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); } if (unlikely(!o)) return 0; #endif p = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples *)o); p->header = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeader *)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf_VariantHeaderSamples(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples *p = (struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf_VariantHeaderSamples) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->header); #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } static int __pyx_tp_traverse_5pysam_7libcbcf_VariantHeaderSamples(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples *p = (struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples *)o; if (p->header) { e = (*v)(((PyObject *)p->header), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5pysam_7libcbcf_VariantHeaderSamples(PyObject *o) { PyObject* tmp; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples *p = (struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples *)o; tmp = ((PyObject*)p->header); p->header = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeader *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_sq_item_5pysam_7libcbcf_VariantHeaderSamples(PyObject *o, Py_ssize_t i) { PyObject *r; PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0; r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x); Py_DECREF(x); return r; } static PyObject *__pyx_getprop_5pysam_7libcbcf_20VariantHeaderSamples_header(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_20VariantHeaderSamples_6header_1__get__(o); } static PyMethodDef __pyx_methods_5pysam_7libcbcf_VariantHeaderSamples[] = { {"add", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantHeaderSamples_14add, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantHeaderSamples_13add}, {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantHeaderSamples_16__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantHeaderSamples_15__reduce_cython__}, {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantHeaderSamples_18__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantHeaderSamples_17__setstate_cython__}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5pysam_7libcbcf_VariantHeaderSamples[] = { {(char *)"header", __pyx_getprop_5pysam_7libcbcf_20VariantHeaderSamples_header, 0, (char *)0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf_VariantHeaderSamples_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf_VariantHeaderSamples}, {Py_nb_bool, (void *)__pyx_pw_5pysam_7libcbcf_20VariantHeaderSamples_5__bool__}, {Py_sq_length, (void *)__pyx_pw_5pysam_7libcbcf_20VariantHeaderSamples_3__len__}, {Py_sq_item, (void *)__pyx_sq_item_5pysam_7libcbcf_VariantHeaderSamples}, {Py_sq_contains, (void *)__pyx_pw_5pysam_7libcbcf_20VariantHeaderSamples_12__contains__}, {Py_mp_length, (void *)__pyx_pw_5pysam_7libcbcf_20VariantHeaderSamples_3__len__}, {Py_mp_subscript, (void *)__pyx_pw_5pysam_7libcbcf_20VariantHeaderSamples_7__getitem__}, {Py_tp_doc, (void *)PyDoc_STR("VariantHeaderSamples(*args, **kwargs)\nsequence of sample names from a :class:`VariantHeader` object")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf_VariantHeaderSamples}, {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_7libcbcf_VariantHeaderSamples}, {Py_tp_iter, (void *)__pyx_pw_5pysam_7libcbcf_20VariantHeaderSamples_9__iter__}, {Py_tp_methods, (void *)__pyx_methods_5pysam_7libcbcf_VariantHeaderSamples}, {Py_tp_getset, (void *)__pyx_getsets_5pysam_7libcbcf_VariantHeaderSamples}, {Py_tp_init, (void *)__pyx_pw_5pysam_7libcbcf_20VariantHeaderSamples_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf_VariantHeaderSamples}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf_VariantHeaderSamples_spec = { "pysam.libcbcf.VariantHeaderSamples", sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5pysam_7libcbcf_VariantHeaderSamples_slots, }; #else static PyNumberMethods __pyx_tp_as_number_VariantHeaderSamples = { 0, /*nb_add*/ 0, /*nb_subtract*/ 0, /*nb_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_divide*/ #endif 0, /*nb_remainder*/ 0, /*nb_divmod*/ 0, /*nb_power*/ 0, /*nb_negative*/ 0, /*nb_positive*/ 0, /*nb_absolute*/ __pyx_pw_5pysam_7libcbcf_20VariantHeaderSamples_5__bool__, /*nb_bool*/ 0, /*nb_invert*/ 0, /*nb_lshift*/ 0, /*nb_rshift*/ 0, /*nb_and*/ 0, /*nb_xor*/ 0, /*nb_or*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_coerce*/ #endif 0, /*nb_int*/ #if PY_MAJOR_VERSION < 3 0, /*nb_long*/ #else 0, /*reserved*/ #endif 0, /*nb_float*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_oct*/ #endif #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_hex*/ #endif 0, /*nb_inplace_add*/ 0, /*nb_inplace_subtract*/ 0, /*nb_inplace_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_inplace_divide*/ #endif 0, /*nb_inplace_remainder*/ 0, /*nb_inplace_power*/ 0, /*nb_inplace_lshift*/ 0, /*nb_inplace_rshift*/ 0, /*nb_inplace_and*/ 0, /*nb_inplace_xor*/ 0, /*nb_inplace_or*/ 0, /*nb_floor_divide*/ 0, /*nb_true_divide*/ 0, /*nb_inplace_floor_divide*/ 0, /*nb_inplace_true_divide*/ 0, /*nb_index*/ #if PY_VERSION_HEX >= 0x03050000 0, /*nb_matrix_multiply*/ #endif #if PY_VERSION_HEX >= 0x03050000 0, /*nb_inplace_matrix_multiply*/ #endif }; static PySequenceMethods __pyx_tp_as_sequence_VariantHeaderSamples = { __pyx_pw_5pysam_7libcbcf_20VariantHeaderSamples_3__len__, /*sq_length*/ 0, /*sq_concat*/ 0, /*sq_repeat*/ __pyx_sq_item_5pysam_7libcbcf_VariantHeaderSamples, /*sq_item*/ 0, /*sq_slice*/ 0, /*sq_ass_item*/ 0, /*sq_ass_slice*/ __pyx_pw_5pysam_7libcbcf_20VariantHeaderSamples_12__contains__, /*sq_contains*/ 0, /*sq_inplace_concat*/ 0, /*sq_inplace_repeat*/ }; static PyMappingMethods __pyx_tp_as_mapping_VariantHeaderSamples = { __pyx_pw_5pysam_7libcbcf_20VariantHeaderSamples_3__len__, /*mp_length*/ __pyx_pw_5pysam_7libcbcf_20VariantHeaderSamples_7__getitem__, /*mp_subscript*/ 0, /*mp_ass_subscript*/ }; static PyTypeObject __pyx_type_5pysam_7libcbcf_VariantHeaderSamples = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""VariantHeaderSamples", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderSamples), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf_VariantHeaderSamples, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ &__pyx_tp_as_number_VariantHeaderSamples, /*tp_as_number*/ &__pyx_tp_as_sequence_VariantHeaderSamples, /*tp_as_sequence*/ &__pyx_tp_as_mapping_VariantHeaderSamples, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("VariantHeaderSamples(*args, **kwargs)\nsequence of sample names from a :class:`VariantHeader` object"), /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf_VariantHeaderSamples, /*tp_traverse*/ __pyx_tp_clear_5pysam_7libcbcf_VariantHeaderSamples, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ __pyx_pw_5pysam_7libcbcf_20VariantHeaderSamples_9__iter__, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5pysam_7libcbcf_VariantHeaderSamples, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5pysam_7libcbcf_VariantHeaderSamples, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5pysam_7libcbcf_20VariantHeaderSamples_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf_VariantHeaderSamples, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantContig(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { struct __pyx_obj_5pysam_7libcbcf_VariantContig *p; PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else if (likely(!__Pyx_PyType_HasFeature(t, Py_TPFLAGS_IS_ABSTRACT))) { o = (*t->tp_alloc)(t, 0); } else { o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); } if (unlikely(!o)) return 0; #endif p = ((struct __pyx_obj_5pysam_7libcbcf_VariantContig *)o); p->header = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeader *)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf_VariantContig(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf_VariantContig *p = (struct __pyx_obj_5pysam_7libcbcf_VariantContig *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf_VariantContig) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->header); #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } static int __pyx_tp_traverse_5pysam_7libcbcf_VariantContig(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf_VariantContig *p = (struct __pyx_obj_5pysam_7libcbcf_VariantContig *)o; if (p->header) { e = (*v)(((PyObject *)p->header), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5pysam_7libcbcf_VariantContig(PyObject *o) { PyObject* tmp; struct __pyx_obj_5pysam_7libcbcf_VariantContig *p = (struct __pyx_obj_5pysam_7libcbcf_VariantContig *)o; tmp = ((PyObject*)p->header); p->header = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeader *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantContig_name(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantContig_4name_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantContig_id(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantContig_2id_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantContig_length(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantContig_6length_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantContig_header_record(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantContig_13header_record_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantContig_header(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantContig_6header_1__get__(o); } static PyMethodDef __pyx_methods_5pysam_7libcbcf_VariantContig[] = { {"remove_header", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_13VariantContig_3remove_header, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_13VariantContig_2remove_header}, {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_13VariantContig_5__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_13VariantContig_4__reduce_cython__}, {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_13VariantContig_7__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_13VariantContig_6__setstate_cython__}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5pysam_7libcbcf_VariantContig[] = { {(char *)"name", __pyx_getprop_5pysam_7libcbcf_13VariantContig_name, 0, (char *)PyDoc_STR("contig name"), 0}, {(char *)"id", __pyx_getprop_5pysam_7libcbcf_13VariantContig_id, 0, (char *)PyDoc_STR("contig internal id number"), 0}, {(char *)"length", __pyx_getprop_5pysam_7libcbcf_13VariantContig_length, 0, (char *)PyDoc_STR("contig length or None if not available"), 0}, {(char *)"header_record", __pyx_getprop_5pysam_7libcbcf_13VariantContig_header_record, 0, (char *)PyDoc_STR(":class:`VariantHeaderRecord` associated with this :class:`VariantContig` object"), 0}, {(char *)"header", __pyx_getprop_5pysam_7libcbcf_13VariantContig_header, 0, (char *)0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf_VariantContig_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf_VariantContig}, {Py_tp_doc, (void *)PyDoc_STR("VariantContig(*args, **kwargs)\ncontig metadata from a :class:`VariantHeader`")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf_VariantContig}, {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_7libcbcf_VariantContig}, {Py_tp_methods, (void *)__pyx_methods_5pysam_7libcbcf_VariantContig}, {Py_tp_getset, (void *)__pyx_getsets_5pysam_7libcbcf_VariantContig}, {Py_tp_init, (void *)__pyx_pw_5pysam_7libcbcf_13VariantContig_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf_VariantContig}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf_VariantContig_spec = { "pysam.libcbcf.VariantContig", sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantContig), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5pysam_7libcbcf_VariantContig_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf_VariantContig = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""VariantContig", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantContig), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf_VariantContig, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("VariantContig(*args, **kwargs)\ncontig metadata from a :class:`VariantHeader`"), /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf_VariantContig, /*tp_traverse*/ __pyx_tp_clear_5pysam_7libcbcf_VariantContig, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5pysam_7libcbcf_VariantContig, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5pysam_7libcbcf_VariantContig, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5pysam_7libcbcf_13VariantContig_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf_VariantContig, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantMetadata(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { struct __pyx_obj_5pysam_7libcbcf_VariantMetadata *p; PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else if (likely(!__Pyx_PyType_HasFeature(t, Py_TPFLAGS_IS_ABSTRACT))) { o = (*t->tp_alloc)(t, 0); } else { o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); } if (unlikely(!o)) return 0; #endif p = ((struct __pyx_obj_5pysam_7libcbcf_VariantMetadata *)o); p->header = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeader *)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf_VariantMetadata(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf_VariantMetadata *p = (struct __pyx_obj_5pysam_7libcbcf_VariantMetadata *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf_VariantMetadata) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->header); #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } static int __pyx_tp_traverse_5pysam_7libcbcf_VariantMetadata(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf_VariantMetadata *p = (struct __pyx_obj_5pysam_7libcbcf_VariantMetadata *)o; if (p->header) { e = (*v)(((PyObject *)p->header), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5pysam_7libcbcf_VariantMetadata(PyObject *o) { PyObject* tmp; struct __pyx_obj_5pysam_7libcbcf_VariantMetadata *p = (struct __pyx_obj_5pysam_7libcbcf_VariantMetadata *)o; tmp = ((PyObject*)p->header); p->header = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeader *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_getprop_5pysam_7libcbcf_15VariantMetadata_name(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_15VariantMetadata_4name_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_15VariantMetadata_id(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_15VariantMetadata_2id_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_15VariantMetadata_number(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_15VariantMetadata_6number_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_15VariantMetadata_type(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_15VariantMetadata_4type_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_15VariantMetadata_description(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_15VariantMetadata_11description_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_15VariantMetadata_record(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_15VariantMetadata_6record_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_15VariantMetadata_header(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_15VariantMetadata_6header_1__get__(o); } static PyMethodDef __pyx_methods_5pysam_7libcbcf_VariantMetadata[] = { {"remove_header", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_15VariantMetadata_3remove_header, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_15VariantMetadata_2remove_header}, {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_15VariantMetadata_5__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_15VariantMetadata_4__reduce_cython__}, {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_15VariantMetadata_7__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_15VariantMetadata_6__setstate_cython__}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5pysam_7libcbcf_VariantMetadata[] = { {(char *)"name", __pyx_getprop_5pysam_7libcbcf_15VariantMetadata_name, 0, (char *)PyDoc_STR("metadata name"), 0}, {(char *)"id", __pyx_getprop_5pysam_7libcbcf_15VariantMetadata_id, 0, (char *)PyDoc_STR("metadata internal header id number"), 0}, {(char *)"number", __pyx_getprop_5pysam_7libcbcf_15VariantMetadata_number, 0, (char *)PyDoc_STR("metadata number (i.e. cardinality)"), 0}, {(char *)"type", __pyx_getprop_5pysam_7libcbcf_15VariantMetadata_type, 0, (char *)PyDoc_STR("metadata value type"), 0}, {(char *)"description", __pyx_getprop_5pysam_7libcbcf_15VariantMetadata_description, 0, (char *)PyDoc_STR("metadata description (or None if not set)"), 0}, {(char *)"record", __pyx_getprop_5pysam_7libcbcf_15VariantMetadata_record, 0, (char *)PyDoc_STR(":class:`VariantHeaderRecord` associated with this :class:`VariantMetadata` object"), 0}, {(char *)"header", __pyx_getprop_5pysam_7libcbcf_15VariantMetadata_header, 0, (char *)0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf_VariantMetadata_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf_VariantMetadata}, {Py_tp_doc, (void *)PyDoc_STR("VariantMetadata(*args, **kwargs)\nfilter, info or format metadata record from a :class:`VariantHeader` object")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf_VariantMetadata}, {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_7libcbcf_VariantMetadata}, {Py_tp_methods, (void *)__pyx_methods_5pysam_7libcbcf_VariantMetadata}, {Py_tp_getset, (void *)__pyx_getsets_5pysam_7libcbcf_VariantMetadata}, {Py_tp_init, (void *)__pyx_pw_5pysam_7libcbcf_15VariantMetadata_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf_VariantMetadata}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf_VariantMetadata_spec = { "pysam.libcbcf.VariantMetadata", sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantMetadata), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5pysam_7libcbcf_VariantMetadata_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf_VariantMetadata = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""VariantMetadata", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantMetadata), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf_VariantMetadata, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("VariantMetadata(*args, **kwargs)\nfilter, info or format metadata record from a :class:`VariantHeader` object"), /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf_VariantMetadata, /*tp_traverse*/ __pyx_tp_clear_5pysam_7libcbcf_VariantMetadata, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5pysam_7libcbcf_VariantMetadata, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5pysam_7libcbcf_VariantMetadata, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5pysam_7libcbcf_15VariantMetadata_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf_VariantMetadata, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantHeaderMetadata(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *p; PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else if (likely(!__Pyx_PyType_HasFeature(t, Py_TPFLAGS_IS_ABSTRACT))) { o = (*t->tp_alloc)(t, 0); } else { o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); } if (unlikely(!o)) return 0; #endif p = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *)o); p->header = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeader *)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf_VariantHeaderMetadata(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *p = (struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf_VariantHeaderMetadata) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->header); #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } static int __pyx_tp_traverse_5pysam_7libcbcf_VariantHeaderMetadata(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *p = (struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *)o; if (p->header) { e = (*v)(((PyObject *)p->header), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5pysam_7libcbcf_VariantHeaderMetadata(PyObject *o) { PyObject* tmp; struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *p = (struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata *)o; tmp = ((PyObject*)p->header); p->header = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeader *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_sq_item_5pysam_7libcbcf_VariantHeaderMetadata(PyObject *o, Py_ssize_t i) { PyObject *r; PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0; r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x); Py_DECREF(x); return r; } static PyObject *__pyx_getprop_5pysam_7libcbcf_21VariantHeaderMetadata_header(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_6header_1__get__(o); } static PyMethodDef __pyx_methods_5pysam_7libcbcf_VariantHeaderMetadata[] = { {"add", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_3add, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_21VariantHeaderMetadata_2add}, {"remove_header", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_11remove_header, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_21VariantHeaderMetadata_10remove_header}, {"clear_header", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_13clear_header, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_21VariantHeaderMetadata_12clear_header}, {"get", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_18get, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_21VariantHeaderMetadata_17get}, {"iterkeys", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_22iterkeys, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_21VariantHeaderMetadata_21iterkeys}, {"itervalues", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_24itervalues, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_21VariantHeaderMetadata_23itervalues}, {"iteritems", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_27iteritems, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_21VariantHeaderMetadata_26iteritems}, {"keys", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_30keys, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_21VariantHeaderMetadata_29keys}, {"items", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_32items, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_21VariantHeaderMetadata_31items}, {"values", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_34values, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_21VariantHeaderMetadata_33values}, {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_36__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_21VariantHeaderMetadata_35__reduce_cython__}, {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_38__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_21VariantHeaderMetadata_37__setstate_cython__}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5pysam_7libcbcf_VariantHeaderMetadata[] = { {(char *)"header", __pyx_getprop_5pysam_7libcbcf_21VariantHeaderMetadata_header, 0, (char *)0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf_VariantHeaderMetadata_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf_VariantHeaderMetadata}, {Py_nb_bool, (void *)__pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_7__bool__}, {Py_sq_length, (void *)__pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_5__len__}, {Py_sq_item, (void *)__pyx_sq_item_5pysam_7libcbcf_VariantHeaderMetadata}, {Py_sq_contains, (void *)__pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_20__contains__}, {Py_mp_length, (void *)__pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_5__len__}, {Py_mp_subscript, (void *)__pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_9__getitem__}, {Py_tp_doc, (void *)PyDoc_STR("VariantHeaderMetadata(*args, **kwargs)\nmapping from filter, info or format name to :class:`VariantMetadata` object")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf_VariantHeaderMetadata}, {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_7libcbcf_VariantHeaderMetadata}, {Py_tp_iter, (void *)__pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_15__iter__}, {Py_tp_methods, (void *)__pyx_methods_5pysam_7libcbcf_VariantHeaderMetadata}, {Py_tp_getset, (void *)__pyx_getsets_5pysam_7libcbcf_VariantHeaderMetadata}, {Py_tp_init, (void *)__pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf_VariantHeaderMetadata}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf_VariantHeaderMetadata_spec = { "pysam.libcbcf.VariantHeaderMetadata", sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5pysam_7libcbcf_VariantHeaderMetadata_slots, }; #else static PyNumberMethods __pyx_tp_as_number_VariantHeaderMetadata = { 0, /*nb_add*/ 0, /*nb_subtract*/ 0, /*nb_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_divide*/ #endif 0, /*nb_remainder*/ 0, /*nb_divmod*/ 0, /*nb_power*/ 0, /*nb_negative*/ 0, /*nb_positive*/ 0, /*nb_absolute*/ __pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_7__bool__, /*nb_bool*/ 0, /*nb_invert*/ 0, /*nb_lshift*/ 0, /*nb_rshift*/ 0, /*nb_and*/ 0, /*nb_xor*/ 0, /*nb_or*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_coerce*/ #endif 0, /*nb_int*/ #if PY_MAJOR_VERSION < 3 0, /*nb_long*/ #else 0, /*reserved*/ #endif 0, /*nb_float*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_oct*/ #endif #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_hex*/ #endif 0, /*nb_inplace_add*/ 0, /*nb_inplace_subtract*/ 0, /*nb_inplace_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_inplace_divide*/ #endif 0, /*nb_inplace_remainder*/ 0, /*nb_inplace_power*/ 0, /*nb_inplace_lshift*/ 0, /*nb_inplace_rshift*/ 0, /*nb_inplace_and*/ 0, /*nb_inplace_xor*/ 0, /*nb_inplace_or*/ 0, /*nb_floor_divide*/ 0, /*nb_true_divide*/ 0, /*nb_inplace_floor_divide*/ 0, /*nb_inplace_true_divide*/ 0, /*nb_index*/ #if PY_VERSION_HEX >= 0x03050000 0, /*nb_matrix_multiply*/ #endif #if PY_VERSION_HEX >= 0x03050000 0, /*nb_inplace_matrix_multiply*/ #endif }; static PySequenceMethods __pyx_tp_as_sequence_VariantHeaderMetadata = { __pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_5__len__, /*sq_length*/ 0, /*sq_concat*/ 0, /*sq_repeat*/ __pyx_sq_item_5pysam_7libcbcf_VariantHeaderMetadata, /*sq_item*/ 0, /*sq_slice*/ 0, /*sq_ass_item*/ 0, /*sq_ass_slice*/ __pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_20__contains__, /*sq_contains*/ 0, /*sq_inplace_concat*/ 0, /*sq_inplace_repeat*/ }; static PyMappingMethods __pyx_tp_as_mapping_VariantHeaderMetadata = { __pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_5__len__, /*mp_length*/ __pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_9__getitem__, /*mp_subscript*/ 0, /*mp_ass_subscript*/ }; static PyTypeObject __pyx_type_5pysam_7libcbcf_VariantHeaderMetadata = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""VariantHeaderMetadata", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantHeaderMetadata), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf_VariantHeaderMetadata, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ &__pyx_tp_as_number_VariantHeaderMetadata, /*tp_as_number*/ &__pyx_tp_as_sequence_VariantHeaderMetadata, /*tp_as_sequence*/ &__pyx_tp_as_mapping_VariantHeaderMetadata, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("VariantHeaderMetadata(*args, **kwargs)\nmapping from filter, info or format name to :class:`VariantMetadata` object"), /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf_VariantHeaderMetadata, /*tp_traverse*/ __pyx_tp_clear_5pysam_7libcbcf_VariantHeaderMetadata, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ __pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_15__iter__, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5pysam_7libcbcf_VariantHeaderMetadata, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5pysam_7libcbcf_VariantHeaderMetadata, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5pysam_7libcbcf_21VariantHeaderMetadata_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf_VariantHeaderMetadata, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantRecord(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { struct __pyx_obj_5pysam_7libcbcf_VariantRecord *p; PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else if (likely(!__Pyx_PyType_HasFeature(t, Py_TPFLAGS_IS_ABSTRACT))) { o = (*t->tp_alloc)(t, 0); } else { o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); } if (unlikely(!o)) return 0; #endif p = ((struct __pyx_obj_5pysam_7libcbcf_VariantRecord *)o); p->header = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeader *)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf_VariantRecord(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf_VariantRecord *p = (struct __pyx_obj_5pysam_7libcbcf_VariantRecord *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf_VariantRecord) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); { PyObject *etype, *eval, *etb; PyErr_Fetch(&etype, &eval, &etb); __Pyx_SET_REFCNT(o, Py_REFCNT(o) + 1); __pyx_pw_5pysam_7libcbcf_13VariantRecord_3__dealloc__(o); __Pyx_SET_REFCNT(o, Py_REFCNT(o) - 1); PyErr_Restore(etype, eval, etb); } Py_CLEAR(p->header); #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } static int __pyx_tp_traverse_5pysam_7libcbcf_VariantRecord(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf_VariantRecord *p = (struct __pyx_obj_5pysam_7libcbcf_VariantRecord *)o; if (p->header) { e = (*v)(((PyObject *)p->header), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5pysam_7libcbcf_VariantRecord(PyObject *o) { PyObject* tmp; struct __pyx_obj_5pysam_7libcbcf_VariantRecord *p = (struct __pyx_obj_5pysam_7libcbcf_VariantRecord *)o; tmp = ((PyObject*)p->header); p->header = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeader *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantRecord_rid(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_3rid_1__get__(o); } static int __pyx_setprop_5pysam_7libcbcf_13VariantRecord_rid(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_3rid_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantRecord_chrom(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_5chrom_1__get__(o); } static int __pyx_setprop_5pysam_7libcbcf_13VariantRecord_chrom(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_5chrom_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantRecord_contig(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_6contig_1__get__(o); } static int __pyx_setprop_5pysam_7libcbcf_13VariantRecord_contig(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_6contig_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantRecord_pos(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_3pos_1__get__(o); } static int __pyx_setprop_5pysam_7libcbcf_13VariantRecord_pos(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_3pos_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantRecord_start(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_5start_1__get__(o); } static int __pyx_setprop_5pysam_7libcbcf_13VariantRecord_start(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_5start_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantRecord_stop(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_4stop_1__get__(o); } static int __pyx_setprop_5pysam_7libcbcf_13VariantRecord_stop(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_4stop_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantRecord_rlen(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_4rlen_1__get__(o); } static int __pyx_setprop_5pysam_7libcbcf_13VariantRecord_rlen(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_4rlen_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantRecord_qual(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_4qual_1__get__(o); } static int __pyx_setprop_5pysam_7libcbcf_13VariantRecord_qual(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_4qual_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantRecord_id(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_2id_1__get__(o); } static int __pyx_setprop_5pysam_7libcbcf_13VariantRecord_id(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_2id_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantRecord_ref(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_3ref_1__get__(o); } static int __pyx_setprop_5pysam_7libcbcf_13VariantRecord_ref(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_3ref_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantRecord_alleles(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_7alleles_1__get__(o); } static int __pyx_setprop_5pysam_7libcbcf_13VariantRecord_alleles(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_7alleles_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantRecord_alts(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_4alts_1__get__(o); } static int __pyx_setprop_5pysam_7libcbcf_13VariantRecord_alts(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_4alts_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantRecord_filter(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_6filter_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantRecord_info(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_4info_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantRecord_format(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_6format_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantRecord_samples(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_7samples_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantRecord_alleles_variant_types(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_21alleles_variant_types_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_13VariantRecord_header(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_13VariantRecord_6header_1__get__(o); } static PyMethodDef __pyx_methods_5pysam_7libcbcf_VariantRecord[] = { {"copy", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_13VariantRecord_5copy, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_13VariantRecord_4copy}, {"translate", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_13VariantRecord_7translate, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_13VariantRecord_6translate}, {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_13VariantRecord_13__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_13VariantRecord_12__reduce_cython__}, {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_13VariantRecord_15__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_13VariantRecord_14__setstate_cython__}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5pysam_7libcbcf_VariantRecord[] = { {(char *)"rid", __pyx_getprop_5pysam_7libcbcf_13VariantRecord_rid, __pyx_setprop_5pysam_7libcbcf_13VariantRecord_rid, (char *)PyDoc_STR("internal reference id number"), 0}, {(char *)"chrom", __pyx_getprop_5pysam_7libcbcf_13VariantRecord_chrom, __pyx_setprop_5pysam_7libcbcf_13VariantRecord_chrom, (char *)PyDoc_STR("chromosome/contig name"), 0}, {(char *)"contig", __pyx_getprop_5pysam_7libcbcf_13VariantRecord_contig, __pyx_setprop_5pysam_7libcbcf_13VariantRecord_contig, (char *)PyDoc_STR("chromosome/contig name"), 0}, {(char *)"pos", __pyx_getprop_5pysam_7libcbcf_13VariantRecord_pos, __pyx_setprop_5pysam_7libcbcf_13VariantRecord_pos, (char *)PyDoc_STR("record start position on chrom/contig (1-based inclusive)"), 0}, {(char *)"start", __pyx_getprop_5pysam_7libcbcf_13VariantRecord_start, __pyx_setprop_5pysam_7libcbcf_13VariantRecord_start, (char *)PyDoc_STR("record start position on chrom/contig (0-based inclusive)"), 0}, {(char *)"stop", __pyx_getprop_5pysam_7libcbcf_13VariantRecord_stop, __pyx_setprop_5pysam_7libcbcf_13VariantRecord_stop, (char *)PyDoc_STR("record stop position on chrom/contig (0-based exclusive)"), 0}, {(char *)"rlen", __pyx_getprop_5pysam_7libcbcf_13VariantRecord_rlen, __pyx_setprop_5pysam_7libcbcf_13VariantRecord_rlen, (char *)PyDoc_STR("record length on chrom/contig (aka rec.stop - rec.start)"), 0}, {(char *)"qual", __pyx_getprop_5pysam_7libcbcf_13VariantRecord_qual, __pyx_setprop_5pysam_7libcbcf_13VariantRecord_qual, (char *)PyDoc_STR("phred scaled quality score or None if not available"), 0}, {(char *)"id", __pyx_getprop_5pysam_7libcbcf_13VariantRecord_id, __pyx_setprop_5pysam_7libcbcf_13VariantRecord_id, (char *)PyDoc_STR("record identifier or None if not available"), 0}, {(char *)"ref", __pyx_getprop_5pysam_7libcbcf_13VariantRecord_ref, __pyx_setprop_5pysam_7libcbcf_13VariantRecord_ref, (char *)PyDoc_STR("reference allele"), 0}, {(char *)"alleles", __pyx_getprop_5pysam_7libcbcf_13VariantRecord_alleles, __pyx_setprop_5pysam_7libcbcf_13VariantRecord_alleles, (char *)PyDoc_STR("tuple of reference allele followed by alt alleles"), 0}, {(char *)"alts", __pyx_getprop_5pysam_7libcbcf_13VariantRecord_alts, __pyx_setprop_5pysam_7libcbcf_13VariantRecord_alts, (char *)PyDoc_STR("tuple of alt alleles"), 0}, {(char *)"filter", __pyx_getprop_5pysam_7libcbcf_13VariantRecord_filter, 0, (char *)PyDoc_STR("filter information (see :class:`VariantRecordFilter`)"), 0}, {(char *)"info", __pyx_getprop_5pysam_7libcbcf_13VariantRecord_info, 0, (char *)PyDoc_STR("info data (see :class:`VariantRecordInfo`)"), 0}, {(char *)"format", __pyx_getprop_5pysam_7libcbcf_13VariantRecord_format, 0, (char *)PyDoc_STR("sample format metadata (see :class:`VariantRecordFormat`)"), 0}, {(char *)"samples", __pyx_getprop_5pysam_7libcbcf_13VariantRecord_samples, 0, (char *)PyDoc_STR("sample data (see :class:`VariantRecordSamples`)"), 0}, {(char *)"alleles_variant_types", __pyx_getprop_5pysam_7libcbcf_13VariantRecord_alleles_variant_types, 0, (char *)0, 0}, {(char *)"header", __pyx_getprop_5pysam_7libcbcf_13VariantRecord_header, 0, (char *)0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf_VariantRecord_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf_VariantRecord}, {Py_tp_str, (void *)__pyx_pw_5pysam_7libcbcf_13VariantRecord_11__str__}, {Py_tp_doc, (void *)PyDoc_STR("VariantRecord(*args, **kwargs)\nVariant record")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf_VariantRecord}, {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_7libcbcf_VariantRecord}, {Py_tp_richcompare, (void *)__pyx_pw_5pysam_7libcbcf_13VariantRecord_9__richcmp__}, {Py_tp_methods, (void *)__pyx_methods_5pysam_7libcbcf_VariantRecord}, {Py_tp_getset, (void *)__pyx_getsets_5pysam_7libcbcf_VariantRecord}, {Py_tp_init, (void *)__pyx_pw_5pysam_7libcbcf_13VariantRecord_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf_VariantRecord}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf_VariantRecord_spec = { "pysam.libcbcf.VariantRecord", sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantRecord), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5pysam_7libcbcf_VariantRecord_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf_VariantRecord = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""VariantRecord", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantRecord), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf_VariantRecord, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ __pyx_pw_5pysam_7libcbcf_13VariantRecord_11__str__, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("VariantRecord(*args, **kwargs)\nVariant record"), /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf_VariantRecord, /*tp_traverse*/ __pyx_tp_clear_5pysam_7libcbcf_VariantRecord, /*tp_clear*/ __pyx_pw_5pysam_7libcbcf_13VariantRecord_9__richcmp__, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5pysam_7libcbcf_VariantRecord, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5pysam_7libcbcf_VariantRecord, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5pysam_7libcbcf_13VariantRecord_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf_VariantRecord, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantRecordFilter(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *p; PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else if (likely(!__Pyx_PyType_HasFeature(t, Py_TPFLAGS_IS_ABSTRACT))) { o = (*t->tp_alloc)(t, 0); } else { o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); } if (unlikely(!o)) return 0; #endif p = ((struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *)o); p->record = ((struct __pyx_obj_5pysam_7libcbcf_VariantRecord *)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf_VariantRecordFilter(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *p = (struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf_VariantRecordFilter) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->record); #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } static int __pyx_tp_traverse_5pysam_7libcbcf_VariantRecordFilter(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *p = (struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *)o; if (p->record) { e = (*v)(((PyObject *)p->record), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5pysam_7libcbcf_VariantRecordFilter(PyObject *o) { PyObject* tmp; struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *p = (struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter *)o; tmp = ((PyObject*)p->record); p->record = ((struct __pyx_obj_5pysam_7libcbcf_VariantRecord *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_sq_item_5pysam_7libcbcf_VariantRecordFilter(PyObject *o, Py_ssize_t i) { PyObject *r; PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0; r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x); Py_DECREF(x); return r; } static int __pyx_mp_ass_subscript_5pysam_7libcbcf_VariantRecordFilter(PyObject *o, PyObject *i, PyObject *v) { if (v) { __Pyx_TypeName o_type_name; o_type_name = __Pyx_PyType_GetName(Py_TYPE(o)); PyErr_Format(PyExc_NotImplementedError, "Subscript assignment not supported by " __Pyx_FMT_TYPENAME, o_type_name); __Pyx_DECREF_TypeName(o_type_name); return -1; } else { return __pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_11__delitem__(o, i); } } static PyMethodDef __pyx_methods_5pysam_7libcbcf_VariantRecordFilter[] = { {"add", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_9add, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordFilter_8add}, {"clear", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_13clear, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordFilter_12clear}, {"get", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_18get, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordFilter_17get}, {"iterkeys", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_22iterkeys, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordFilter_21iterkeys}, {"itervalues", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_24itervalues, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordFilter_23itervalues}, {"iteritems", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_27iteritems, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordFilter_26iteritems}, {"keys", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_30keys, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordFilter_29keys}, {"items", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_32items, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordFilter_31items}, {"values", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_34values, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordFilter_33values}, {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_38__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordFilter_37__reduce_cython__}, {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_40__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordFilter_39__setstate_cython__}, {0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf_VariantRecordFilter_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf_VariantRecordFilter}, {Py_nb_bool, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_5__bool__}, {Py_sq_length, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_3__len__}, {Py_sq_item, (void *)__pyx_sq_item_5pysam_7libcbcf_VariantRecordFilter}, {Py_sq_contains, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_20__contains__}, {Py_mp_length, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_3__len__}, {Py_mp_subscript, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_7__getitem__}, {Py_mp_ass_subscript, (void *)__pyx_mp_ass_subscript_5pysam_7libcbcf_VariantRecordFilter}, {Py_tp_doc, (void *)PyDoc_STR("VariantRecordFilter(*args, **kwargs)\nFilters set on a :class:`VariantRecord` object, presented as a mapping from\n filter index or name to :class:`VariantMetadata` object")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf_VariantRecordFilter}, {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_7libcbcf_VariantRecordFilter}, {Py_tp_richcompare, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_36__richcmp__}, {Py_tp_iter, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_15__iter__}, {Py_tp_methods, (void *)__pyx_methods_5pysam_7libcbcf_VariantRecordFilter}, {Py_tp_init, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf_VariantRecordFilter}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf_VariantRecordFilter_spec = { "pysam.libcbcf.VariantRecordFilter", sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5pysam_7libcbcf_VariantRecordFilter_slots, }; #else static PyNumberMethods __pyx_tp_as_number_VariantRecordFilter = { 0, /*nb_add*/ 0, /*nb_subtract*/ 0, /*nb_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_divide*/ #endif 0, /*nb_remainder*/ 0, /*nb_divmod*/ 0, /*nb_power*/ 0, /*nb_negative*/ 0, /*nb_positive*/ 0, /*nb_absolute*/ __pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_5__bool__, /*nb_bool*/ 0, /*nb_invert*/ 0, /*nb_lshift*/ 0, /*nb_rshift*/ 0, /*nb_and*/ 0, /*nb_xor*/ 0, /*nb_or*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_coerce*/ #endif 0, /*nb_int*/ #if PY_MAJOR_VERSION < 3 0, /*nb_long*/ #else 0, /*reserved*/ #endif 0, /*nb_float*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_oct*/ #endif #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_hex*/ #endif 0, /*nb_inplace_add*/ 0, /*nb_inplace_subtract*/ 0, /*nb_inplace_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_inplace_divide*/ #endif 0, /*nb_inplace_remainder*/ 0, /*nb_inplace_power*/ 0, /*nb_inplace_lshift*/ 0, /*nb_inplace_rshift*/ 0, /*nb_inplace_and*/ 0, /*nb_inplace_xor*/ 0, /*nb_inplace_or*/ 0, /*nb_floor_divide*/ 0, /*nb_true_divide*/ 0, /*nb_inplace_floor_divide*/ 0, /*nb_inplace_true_divide*/ 0, /*nb_index*/ #if PY_VERSION_HEX >= 0x03050000 0, /*nb_matrix_multiply*/ #endif #if PY_VERSION_HEX >= 0x03050000 0, /*nb_inplace_matrix_multiply*/ #endif }; static PySequenceMethods __pyx_tp_as_sequence_VariantRecordFilter = { __pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_3__len__, /*sq_length*/ 0, /*sq_concat*/ 0, /*sq_repeat*/ __pyx_sq_item_5pysam_7libcbcf_VariantRecordFilter, /*sq_item*/ 0, /*sq_slice*/ 0, /*sq_ass_item*/ 0, /*sq_ass_slice*/ __pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_20__contains__, /*sq_contains*/ 0, /*sq_inplace_concat*/ 0, /*sq_inplace_repeat*/ }; static PyMappingMethods __pyx_tp_as_mapping_VariantRecordFilter = { __pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_3__len__, /*mp_length*/ __pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_7__getitem__, /*mp_subscript*/ __pyx_mp_ass_subscript_5pysam_7libcbcf_VariantRecordFilter, /*mp_ass_subscript*/ }; static PyTypeObject __pyx_type_5pysam_7libcbcf_VariantRecordFilter = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""VariantRecordFilter", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFilter), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf_VariantRecordFilter, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ &__pyx_tp_as_number_VariantRecordFilter, /*tp_as_number*/ &__pyx_tp_as_sequence_VariantRecordFilter, /*tp_as_sequence*/ &__pyx_tp_as_mapping_VariantRecordFilter, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("VariantRecordFilter(*args, **kwargs)\nFilters set on a :class:`VariantRecord` object, presented as a mapping from\n filter index or name to :class:`VariantMetadata` object"), /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf_VariantRecordFilter, /*tp_traverse*/ __pyx_tp_clear_5pysam_7libcbcf_VariantRecordFilter, /*tp_clear*/ __pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_36__richcmp__, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ __pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_15__iter__, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5pysam_7libcbcf_VariantRecordFilter, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5pysam_7libcbcf_19VariantRecordFilter_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf_VariantRecordFilter, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantRecordFormat(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *p; PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else if (likely(!__Pyx_PyType_HasFeature(t, Py_TPFLAGS_IS_ABSTRACT))) { o = (*t->tp_alloc)(t, 0); } else { o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); } if (unlikely(!o)) return 0; #endif p = ((struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *)o); p->record = ((struct __pyx_obj_5pysam_7libcbcf_VariantRecord *)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf_VariantRecordFormat(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *p = (struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf_VariantRecordFormat) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->record); #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } static int __pyx_tp_traverse_5pysam_7libcbcf_VariantRecordFormat(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *p = (struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *)o; if (p->record) { e = (*v)(((PyObject *)p->record), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5pysam_7libcbcf_VariantRecordFormat(PyObject *o) { PyObject* tmp; struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *p = (struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat *)o; tmp = ((PyObject*)p->record); p->record = ((struct __pyx_obj_5pysam_7libcbcf_VariantRecord *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_sq_item_5pysam_7libcbcf_VariantRecordFormat(PyObject *o, Py_ssize_t i) { PyObject *r; PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0; r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x); Py_DECREF(x); return r; } static int __pyx_mp_ass_subscript_5pysam_7libcbcf_VariantRecordFormat(PyObject *o, PyObject *i, PyObject *v) { if (v) { __Pyx_TypeName o_type_name; o_type_name = __Pyx_PyType_GetName(Py_TYPE(o)); PyErr_Format(PyExc_NotImplementedError, "Subscript assignment not supported by " __Pyx_FMT_TYPENAME, o_type_name); __Pyx_DECREF_TypeName(o_type_name); return -1; } else { return __pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_9__delitem__(o, i); } } static PyMethodDef __pyx_methods_5pysam_7libcbcf_VariantRecordFormat[] = { {"clear", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_11clear, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordFormat_10clear}, {"get", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_16get, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordFormat_15get}, {"iterkeys", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_20iterkeys, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordFormat_19iterkeys}, {"itervalues", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_22itervalues, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordFormat_21itervalues}, {"iteritems", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_25iteritems, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordFormat_24iteritems}, {"keys", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_28keys, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordFormat_27keys}, {"items", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_30items, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordFormat_29items}, {"values", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_32values, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordFormat_31values}, {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_34__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordFormat_33__reduce_cython__}, {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_36__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordFormat_35__setstate_cython__}, {0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf_VariantRecordFormat_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf_VariantRecordFormat}, {Py_nb_bool, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_5__bool__}, {Py_sq_length, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_3__len__}, {Py_sq_item, (void *)__pyx_sq_item_5pysam_7libcbcf_VariantRecordFormat}, {Py_sq_contains, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_18__contains__}, {Py_mp_length, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_3__len__}, {Py_mp_subscript, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_7__getitem__}, {Py_mp_ass_subscript, (void *)__pyx_mp_ass_subscript_5pysam_7libcbcf_VariantRecordFormat}, {Py_tp_doc, (void *)PyDoc_STR("VariantRecordFormat(*args, **kwargs)\nFormat data present for each sample in a :class:`VariantRecord` object,\n presented as mapping from format name to :class:`VariantMetadata` object.")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf_VariantRecordFormat}, {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_7libcbcf_VariantRecordFormat}, {Py_tp_iter, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_13__iter__}, {Py_tp_methods, (void *)__pyx_methods_5pysam_7libcbcf_VariantRecordFormat}, {Py_tp_init, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf_VariantRecordFormat}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf_VariantRecordFormat_spec = { "pysam.libcbcf.VariantRecordFormat", sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5pysam_7libcbcf_VariantRecordFormat_slots, }; #else static PyNumberMethods __pyx_tp_as_number_VariantRecordFormat = { 0, /*nb_add*/ 0, /*nb_subtract*/ 0, /*nb_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_divide*/ #endif 0, /*nb_remainder*/ 0, /*nb_divmod*/ 0, /*nb_power*/ 0, /*nb_negative*/ 0, /*nb_positive*/ 0, /*nb_absolute*/ __pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_5__bool__, /*nb_bool*/ 0, /*nb_invert*/ 0, /*nb_lshift*/ 0, /*nb_rshift*/ 0, /*nb_and*/ 0, /*nb_xor*/ 0, /*nb_or*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_coerce*/ #endif 0, /*nb_int*/ #if PY_MAJOR_VERSION < 3 0, /*nb_long*/ #else 0, /*reserved*/ #endif 0, /*nb_float*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_oct*/ #endif #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_hex*/ #endif 0, /*nb_inplace_add*/ 0, /*nb_inplace_subtract*/ 0, /*nb_inplace_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_inplace_divide*/ #endif 0, /*nb_inplace_remainder*/ 0, /*nb_inplace_power*/ 0, /*nb_inplace_lshift*/ 0, /*nb_inplace_rshift*/ 0, /*nb_inplace_and*/ 0, /*nb_inplace_xor*/ 0, /*nb_inplace_or*/ 0, /*nb_floor_divide*/ 0, /*nb_true_divide*/ 0, /*nb_inplace_floor_divide*/ 0, /*nb_inplace_true_divide*/ 0, /*nb_index*/ #if PY_VERSION_HEX >= 0x03050000 0, /*nb_matrix_multiply*/ #endif #if PY_VERSION_HEX >= 0x03050000 0, /*nb_inplace_matrix_multiply*/ #endif }; static PySequenceMethods __pyx_tp_as_sequence_VariantRecordFormat = { __pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_3__len__, /*sq_length*/ 0, /*sq_concat*/ 0, /*sq_repeat*/ __pyx_sq_item_5pysam_7libcbcf_VariantRecordFormat, /*sq_item*/ 0, /*sq_slice*/ 0, /*sq_ass_item*/ 0, /*sq_ass_slice*/ __pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_18__contains__, /*sq_contains*/ 0, /*sq_inplace_concat*/ 0, /*sq_inplace_repeat*/ }; static PyMappingMethods __pyx_tp_as_mapping_VariantRecordFormat = { __pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_3__len__, /*mp_length*/ __pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_7__getitem__, /*mp_subscript*/ __pyx_mp_ass_subscript_5pysam_7libcbcf_VariantRecordFormat, /*mp_ass_subscript*/ }; static PyTypeObject __pyx_type_5pysam_7libcbcf_VariantRecordFormat = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""VariantRecordFormat", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantRecordFormat), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf_VariantRecordFormat, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ &__pyx_tp_as_number_VariantRecordFormat, /*tp_as_number*/ &__pyx_tp_as_sequence_VariantRecordFormat, /*tp_as_sequence*/ &__pyx_tp_as_mapping_VariantRecordFormat, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("VariantRecordFormat(*args, **kwargs)\nFormat data present for each sample in a :class:`VariantRecord` object,\n presented as mapping from format name to :class:`VariantMetadata` object."), /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf_VariantRecordFormat, /*tp_traverse*/ __pyx_tp_clear_5pysam_7libcbcf_VariantRecordFormat, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ __pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_13__iter__, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5pysam_7libcbcf_VariantRecordFormat, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5pysam_7libcbcf_19VariantRecordFormat_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf_VariantRecordFormat, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantRecordInfo(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *p; PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else if (likely(!__Pyx_PyType_HasFeature(t, Py_TPFLAGS_IS_ABSTRACT))) { o = (*t->tp_alloc)(t, 0); } else { o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); } if (unlikely(!o)) return 0; #endif p = ((struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *)o); p->record = ((struct __pyx_obj_5pysam_7libcbcf_VariantRecord *)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf_VariantRecordInfo(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *p = (struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf_VariantRecordInfo) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->record); #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } static int __pyx_tp_traverse_5pysam_7libcbcf_VariantRecordInfo(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *p = (struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *)o; if (p->record) { e = (*v)(((PyObject *)p->record), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5pysam_7libcbcf_VariantRecordInfo(PyObject *o) { PyObject* tmp; struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *p = (struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo *)o; tmp = ((PyObject*)p->record); p->record = ((struct __pyx_obj_5pysam_7libcbcf_VariantRecord *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_sq_item_5pysam_7libcbcf_VariantRecordInfo(PyObject *o, Py_ssize_t i) { PyObject *r; PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0; r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x); Py_DECREF(x); return r; } static int __pyx_mp_ass_subscript_5pysam_7libcbcf_VariantRecordInfo(PyObject *o, PyObject *i, PyObject *v) { if (v) { return __pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_9__setitem__(o, i, v); } else { return __pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_11__delitem__(o, i); } } static PyMethodDef __pyx_methods_5pysam_7libcbcf_VariantRecordInfo[] = { {"clear", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_13clear, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_17VariantRecordInfo_12clear}, {"get", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_18get, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_17VariantRecordInfo_17get}, {"iterkeys", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_22iterkeys, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_17VariantRecordInfo_21iterkeys}, {"itervalues", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_24itervalues, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_17VariantRecordInfo_23itervalues}, {"iteritems", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_27iteritems, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_17VariantRecordInfo_26iteritems}, {"keys", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_30keys, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_17VariantRecordInfo_29keys}, {"items", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_32items, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_17VariantRecordInfo_31items}, {"values", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_34values, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_17VariantRecordInfo_33values}, {"update", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_36update, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_17VariantRecordInfo_35update}, {"pop", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_38pop, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_17VariantRecordInfo_37pop}, {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_42__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_17VariantRecordInfo_41__reduce_cython__}, {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_44__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_17VariantRecordInfo_43__setstate_cython__}, {0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf_VariantRecordInfo_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf_VariantRecordInfo}, {Py_nb_bool, (void *)__pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_5__bool__}, {Py_sq_length, (void *)__pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_3__len__}, {Py_sq_item, (void *)__pyx_sq_item_5pysam_7libcbcf_VariantRecordInfo}, {Py_sq_contains, (void *)__pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_20__contains__}, {Py_mp_length, (void *)__pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_3__len__}, {Py_mp_subscript, (void *)__pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_7__getitem__}, {Py_mp_ass_subscript, (void *)__pyx_mp_ass_subscript_5pysam_7libcbcf_VariantRecordInfo}, {Py_tp_doc, (void *)PyDoc_STR("VariantRecordInfo(*args, **kwargs)\nInfo data stored in a :class:`VariantRecord` object, presented as a\n mapping from info metadata name to value.")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf_VariantRecordInfo}, {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_7libcbcf_VariantRecordInfo}, {Py_tp_richcompare, (void *)__pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_40__richcmp__}, {Py_tp_iter, (void *)__pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_15__iter__}, {Py_tp_methods, (void *)__pyx_methods_5pysam_7libcbcf_VariantRecordInfo}, {Py_tp_init, (void *)__pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf_VariantRecordInfo}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf_VariantRecordInfo_spec = { "pysam.libcbcf.VariantRecordInfo", sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5pysam_7libcbcf_VariantRecordInfo_slots, }; #else static PyNumberMethods __pyx_tp_as_number_VariantRecordInfo = { 0, /*nb_add*/ 0, /*nb_subtract*/ 0, /*nb_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_divide*/ #endif 0, /*nb_remainder*/ 0, /*nb_divmod*/ 0, /*nb_power*/ 0, /*nb_negative*/ 0, /*nb_positive*/ 0, /*nb_absolute*/ __pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_5__bool__, /*nb_bool*/ 0, /*nb_invert*/ 0, /*nb_lshift*/ 0, /*nb_rshift*/ 0, /*nb_and*/ 0, /*nb_xor*/ 0, /*nb_or*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_coerce*/ #endif 0, /*nb_int*/ #if PY_MAJOR_VERSION < 3 0, /*nb_long*/ #else 0, /*reserved*/ #endif 0, /*nb_float*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_oct*/ #endif #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_hex*/ #endif 0, /*nb_inplace_add*/ 0, /*nb_inplace_subtract*/ 0, /*nb_inplace_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_inplace_divide*/ #endif 0, /*nb_inplace_remainder*/ 0, /*nb_inplace_power*/ 0, /*nb_inplace_lshift*/ 0, /*nb_inplace_rshift*/ 0, /*nb_inplace_and*/ 0, /*nb_inplace_xor*/ 0, /*nb_inplace_or*/ 0, /*nb_floor_divide*/ 0, /*nb_true_divide*/ 0, /*nb_inplace_floor_divide*/ 0, /*nb_inplace_true_divide*/ 0, /*nb_index*/ #if PY_VERSION_HEX >= 0x03050000 0, /*nb_matrix_multiply*/ #endif #if PY_VERSION_HEX >= 0x03050000 0, /*nb_inplace_matrix_multiply*/ #endif }; static PySequenceMethods __pyx_tp_as_sequence_VariantRecordInfo = { __pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_3__len__, /*sq_length*/ 0, /*sq_concat*/ 0, /*sq_repeat*/ __pyx_sq_item_5pysam_7libcbcf_VariantRecordInfo, /*sq_item*/ 0, /*sq_slice*/ 0, /*sq_ass_item*/ 0, /*sq_ass_slice*/ __pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_20__contains__, /*sq_contains*/ 0, /*sq_inplace_concat*/ 0, /*sq_inplace_repeat*/ }; static PyMappingMethods __pyx_tp_as_mapping_VariantRecordInfo = { __pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_3__len__, /*mp_length*/ __pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_7__getitem__, /*mp_subscript*/ __pyx_mp_ass_subscript_5pysam_7libcbcf_VariantRecordInfo, /*mp_ass_subscript*/ }; static PyTypeObject __pyx_type_5pysam_7libcbcf_VariantRecordInfo = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""VariantRecordInfo", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantRecordInfo), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf_VariantRecordInfo, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ &__pyx_tp_as_number_VariantRecordInfo, /*tp_as_number*/ &__pyx_tp_as_sequence_VariantRecordInfo, /*tp_as_sequence*/ &__pyx_tp_as_mapping_VariantRecordInfo, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("VariantRecordInfo(*args, **kwargs)\nInfo data stored in a :class:`VariantRecord` object, presented as a\n mapping from info metadata name to value."), /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf_VariantRecordInfo, /*tp_traverse*/ __pyx_tp_clear_5pysam_7libcbcf_VariantRecordInfo, /*tp_clear*/ __pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_40__richcmp__, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ __pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_15__iter__, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5pysam_7libcbcf_VariantRecordInfo, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5pysam_7libcbcf_17VariantRecordInfo_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf_VariantRecordInfo, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantRecordSamples(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *p; PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else if (likely(!__Pyx_PyType_HasFeature(t, Py_TPFLAGS_IS_ABSTRACT))) { o = (*t->tp_alloc)(t, 0); } else { o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); } if (unlikely(!o)) return 0; #endif p = ((struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *)o); p->record = ((struct __pyx_obj_5pysam_7libcbcf_VariantRecord *)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf_VariantRecordSamples(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *p = (struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf_VariantRecordSamples) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->record); #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } static int __pyx_tp_traverse_5pysam_7libcbcf_VariantRecordSamples(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *p = (struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *)o; if (p->record) { e = (*v)(((PyObject *)p->record), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5pysam_7libcbcf_VariantRecordSamples(PyObject *o) { PyObject* tmp; struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *p = (struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples *)o; tmp = ((PyObject*)p->record); p->record = ((struct __pyx_obj_5pysam_7libcbcf_VariantRecord *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_sq_item_5pysam_7libcbcf_VariantRecordSamples(PyObject *o, Py_ssize_t i) { PyObject *r; PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0; r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x); Py_DECREF(x); return r; } static PyMethodDef __pyx_methods_5pysam_7libcbcf_VariantRecordSamples[] = { {"get", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_12get, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantRecordSamples_11get}, {"iterkeys", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_16iterkeys, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantRecordSamples_15iterkeys}, {"itervalues", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_18itervalues, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantRecordSamples_17itervalues}, {"iteritems", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_21iteritems, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantRecordSamples_20iteritems}, {"keys", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_24keys, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantRecordSamples_23keys}, {"items", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_26items, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantRecordSamples_25items}, {"values", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_28values, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantRecordSamples_27values}, {"update", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_30update, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantRecordSamples_29update}, {"pop", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_32pop, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantRecordSamples_31pop}, {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_36__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantRecordSamples_35__reduce_cython__}, {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_38__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_20VariantRecordSamples_37__setstate_cython__}, {0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf_VariantRecordSamples_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf_VariantRecordSamples}, {Py_nb_bool, (void *)__pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_5__bool__}, {Py_sq_length, (void *)__pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_3__len__}, {Py_sq_item, (void *)__pyx_sq_item_5pysam_7libcbcf_VariantRecordSamples}, {Py_sq_contains, (void *)__pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_14__contains__}, {Py_mp_length, (void *)__pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_3__len__}, {Py_mp_subscript, (void *)__pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_7__getitem__}, {Py_tp_doc, (void *)PyDoc_STR("VariantRecordSamples(*args, **kwargs)\nmapping from sample index or name to :class:`VariantRecordSample` object.")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf_VariantRecordSamples}, {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_7libcbcf_VariantRecordSamples}, {Py_tp_richcompare, (void *)__pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_34__richcmp__}, {Py_tp_iter, (void *)__pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_9__iter__}, {Py_tp_methods, (void *)__pyx_methods_5pysam_7libcbcf_VariantRecordSamples}, {Py_tp_init, (void *)__pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf_VariantRecordSamples}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf_VariantRecordSamples_spec = { "pysam.libcbcf.VariantRecordSamples", sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5pysam_7libcbcf_VariantRecordSamples_slots, }; #else static PyNumberMethods __pyx_tp_as_number_VariantRecordSamples = { 0, /*nb_add*/ 0, /*nb_subtract*/ 0, /*nb_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_divide*/ #endif 0, /*nb_remainder*/ 0, /*nb_divmod*/ 0, /*nb_power*/ 0, /*nb_negative*/ 0, /*nb_positive*/ 0, /*nb_absolute*/ __pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_5__bool__, /*nb_bool*/ 0, /*nb_invert*/ 0, /*nb_lshift*/ 0, /*nb_rshift*/ 0, /*nb_and*/ 0, /*nb_xor*/ 0, /*nb_or*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_coerce*/ #endif 0, /*nb_int*/ #if PY_MAJOR_VERSION < 3 0, /*nb_long*/ #else 0, /*reserved*/ #endif 0, /*nb_float*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_oct*/ #endif #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_hex*/ #endif 0, /*nb_inplace_add*/ 0, /*nb_inplace_subtract*/ 0, /*nb_inplace_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_inplace_divide*/ #endif 0, /*nb_inplace_remainder*/ 0, /*nb_inplace_power*/ 0, /*nb_inplace_lshift*/ 0, /*nb_inplace_rshift*/ 0, /*nb_inplace_and*/ 0, /*nb_inplace_xor*/ 0, /*nb_inplace_or*/ 0, /*nb_floor_divide*/ 0, /*nb_true_divide*/ 0, /*nb_inplace_floor_divide*/ 0, /*nb_inplace_true_divide*/ 0, /*nb_index*/ #if PY_VERSION_HEX >= 0x03050000 0, /*nb_matrix_multiply*/ #endif #if PY_VERSION_HEX >= 0x03050000 0, /*nb_inplace_matrix_multiply*/ #endif }; static PySequenceMethods __pyx_tp_as_sequence_VariantRecordSamples = { __pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_3__len__, /*sq_length*/ 0, /*sq_concat*/ 0, /*sq_repeat*/ __pyx_sq_item_5pysam_7libcbcf_VariantRecordSamples, /*sq_item*/ 0, /*sq_slice*/ 0, /*sq_ass_item*/ 0, /*sq_ass_slice*/ __pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_14__contains__, /*sq_contains*/ 0, /*sq_inplace_concat*/ 0, /*sq_inplace_repeat*/ }; static PyMappingMethods __pyx_tp_as_mapping_VariantRecordSamples = { __pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_3__len__, /*mp_length*/ __pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_7__getitem__, /*mp_subscript*/ 0, /*mp_ass_subscript*/ }; static PyTypeObject __pyx_type_5pysam_7libcbcf_VariantRecordSamples = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""VariantRecordSamples", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSamples), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf_VariantRecordSamples, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ &__pyx_tp_as_number_VariantRecordSamples, /*tp_as_number*/ &__pyx_tp_as_sequence_VariantRecordSamples, /*tp_as_sequence*/ &__pyx_tp_as_mapping_VariantRecordSamples, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("VariantRecordSamples(*args, **kwargs)\nmapping from sample index or name to :class:`VariantRecordSample` object."), /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf_VariantRecordSamples, /*tp_traverse*/ __pyx_tp_clear_5pysam_7libcbcf_VariantRecordSamples, /*tp_clear*/ __pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_34__richcmp__, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ __pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_9__iter__, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5pysam_7libcbcf_VariantRecordSamples, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5pysam_7libcbcf_20VariantRecordSamples_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf_VariantRecordSamples, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantRecordSample(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *p; PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else if (likely(!__Pyx_PyType_HasFeature(t, Py_TPFLAGS_IS_ABSTRACT))) { o = (*t->tp_alloc)(t, 0); } else { o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); } if (unlikely(!o)) return 0; #endif p = ((struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *)o); p->record = ((struct __pyx_obj_5pysam_7libcbcf_VariantRecord *)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf_VariantRecordSample(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *p = (struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf_VariantRecordSample) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->record); #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } static int __pyx_tp_traverse_5pysam_7libcbcf_VariantRecordSample(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *p = (struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *)o; if (p->record) { e = (*v)(((PyObject *)p->record), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5pysam_7libcbcf_VariantRecordSample(PyObject *o) { PyObject* tmp; struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *p = (struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *)o; tmp = ((PyObject*)p->record); p->record = ((struct __pyx_obj_5pysam_7libcbcf_VariantRecord *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_sq_item_5pysam_7libcbcf_VariantRecordSample(PyObject *o, Py_ssize_t i) { PyObject *r; PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0; r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x); Py_DECREF(x); return r; } static int __pyx_mp_ass_subscript_5pysam_7libcbcf_VariantRecordSample(PyObject *o, PyObject *i, PyObject *v) { if (v) { return __pyx_pw_5pysam_7libcbcf_19VariantRecordSample_9__setitem__(o, i, v); } else { return __pyx_pw_5pysam_7libcbcf_19VariantRecordSample_11__delitem__(o, i); } } static PyObject *__pyx_getprop_5pysam_7libcbcf_19VariantRecordSample_name(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_19VariantRecordSample_4name_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_19VariantRecordSample_allele_indices(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_19VariantRecordSample_14allele_indices_1__get__(o); } static int __pyx_setprop_5pysam_7libcbcf_19VariantRecordSample_allele_indices(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5pysam_7libcbcf_19VariantRecordSample_14allele_indices_3__set__(o, v); } else { return __pyx_pw_5pysam_7libcbcf_19VariantRecordSample_14allele_indices_5__del__(o); } } static PyObject *__pyx_getprop_5pysam_7libcbcf_19VariantRecordSample_alleles(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_19VariantRecordSample_7alleles_1__get__(o); } static int __pyx_setprop_5pysam_7libcbcf_19VariantRecordSample_alleles(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5pysam_7libcbcf_19VariantRecordSample_7alleles_3__set__(o, v); } else { return __pyx_pw_5pysam_7libcbcf_19VariantRecordSample_7alleles_5__del__(o); } } static PyObject *__pyx_getprop_5pysam_7libcbcf_19VariantRecordSample_phased(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_19VariantRecordSample_6phased_1__get__(o); } static int __pyx_setprop_5pysam_7libcbcf_19VariantRecordSample_phased(PyObject *o, PyObject *v, CYTHON_UNUSED void *x) { if (v) { return __pyx_pw_5pysam_7libcbcf_19VariantRecordSample_6phased_3__set__(o, v); } else { PyErr_SetString(PyExc_NotImplementedError, "__del__"); return -1; } } static PyObject *__pyx_getprop_5pysam_7libcbcf_19VariantRecordSample_index(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_19VariantRecordSample_5index_1__get__(o); } static PyMethodDef __pyx_methods_5pysam_7libcbcf_VariantRecordSample[] = { {"clear", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordSample_13clear, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordSample_12clear}, {"get", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordSample_18get, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordSample_17get}, {"iterkeys", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordSample_22iterkeys, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordSample_21iterkeys}, {"itervalues", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordSample_24itervalues, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordSample_23itervalues}, {"iteritems", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordSample_27iteritems, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordSample_26iteritems}, {"keys", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordSample_30keys, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordSample_29keys}, {"items", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordSample_32items, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordSample_31items}, {"values", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordSample_34values, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordSample_33values}, {"update", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordSample_36update, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordSample_35update}, {"pop", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordSample_38pop, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordSample_37pop}, {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordSample_42__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordSample_41__reduce_cython__}, {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_19VariantRecordSample_44__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_19VariantRecordSample_43__setstate_cython__}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5pysam_7libcbcf_VariantRecordSample[] = { {(char *)"name", __pyx_getprop_5pysam_7libcbcf_19VariantRecordSample_name, 0, (char *)PyDoc_STR("sample name"), 0}, {(char *)"allele_indices", __pyx_getprop_5pysam_7libcbcf_19VariantRecordSample_allele_indices, __pyx_setprop_5pysam_7libcbcf_19VariantRecordSample_allele_indices, (char *)PyDoc_STR("allele indices for called genotype, if present. Otherwise None"), 0}, {(char *)"alleles", __pyx_getprop_5pysam_7libcbcf_19VariantRecordSample_alleles, __pyx_setprop_5pysam_7libcbcf_19VariantRecordSample_alleles, (char *)PyDoc_STR("alleles for called genotype, if present. Otherwise None"), 0}, {(char *)"phased", __pyx_getprop_5pysam_7libcbcf_19VariantRecordSample_phased, __pyx_setprop_5pysam_7libcbcf_19VariantRecordSample_phased, (char *)PyDoc_STR("False if genotype is missing or any allele is unphased. Otherwise True."), 0}, {(char *)"index", __pyx_getprop_5pysam_7libcbcf_19VariantRecordSample_index, 0, (char *)0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf_VariantRecordSample_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf_VariantRecordSample}, {Py_nb_bool, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordSample_5__bool__}, {Py_sq_length, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordSample_3__len__}, {Py_sq_item, (void *)__pyx_sq_item_5pysam_7libcbcf_VariantRecordSample}, {Py_sq_contains, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordSample_20__contains__}, {Py_mp_length, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordSample_3__len__}, {Py_mp_subscript, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordSample_7__getitem__}, {Py_mp_ass_subscript, (void *)__pyx_mp_ass_subscript_5pysam_7libcbcf_VariantRecordSample}, {Py_tp_doc, (void *)PyDoc_STR("VariantRecordSample(*args, **kwargs)\nData for a single sample from a :class:`VariantRecord` object.\n Provides data accessors for genotypes and a mapping interface\n from format name to values.\n ")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf_VariantRecordSample}, {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_7libcbcf_VariantRecordSample}, {Py_tp_richcompare, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordSample_40__richcmp__}, {Py_tp_iter, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordSample_15__iter__}, {Py_tp_methods, (void *)__pyx_methods_5pysam_7libcbcf_VariantRecordSample}, {Py_tp_getset, (void *)__pyx_getsets_5pysam_7libcbcf_VariantRecordSample}, {Py_tp_init, (void *)__pyx_pw_5pysam_7libcbcf_19VariantRecordSample_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf_VariantRecordSample}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf_VariantRecordSample_spec = { "pysam.libcbcf.VariantRecordSample", sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5pysam_7libcbcf_VariantRecordSample_slots, }; #else static PyNumberMethods __pyx_tp_as_number_VariantRecordSample = { 0, /*nb_add*/ 0, /*nb_subtract*/ 0, /*nb_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_divide*/ #endif 0, /*nb_remainder*/ 0, /*nb_divmod*/ 0, /*nb_power*/ 0, /*nb_negative*/ 0, /*nb_positive*/ 0, /*nb_absolute*/ __pyx_pw_5pysam_7libcbcf_19VariantRecordSample_5__bool__, /*nb_bool*/ 0, /*nb_invert*/ 0, /*nb_lshift*/ 0, /*nb_rshift*/ 0, /*nb_and*/ 0, /*nb_xor*/ 0, /*nb_or*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_coerce*/ #endif 0, /*nb_int*/ #if PY_MAJOR_VERSION < 3 0, /*nb_long*/ #else 0, /*reserved*/ #endif 0, /*nb_float*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_oct*/ #endif #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_hex*/ #endif 0, /*nb_inplace_add*/ 0, /*nb_inplace_subtract*/ 0, /*nb_inplace_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_inplace_divide*/ #endif 0, /*nb_inplace_remainder*/ 0, /*nb_inplace_power*/ 0, /*nb_inplace_lshift*/ 0, /*nb_inplace_rshift*/ 0, /*nb_inplace_and*/ 0, /*nb_inplace_xor*/ 0, /*nb_inplace_or*/ 0, /*nb_floor_divide*/ 0, /*nb_true_divide*/ 0, /*nb_inplace_floor_divide*/ 0, /*nb_inplace_true_divide*/ 0, /*nb_index*/ #if PY_VERSION_HEX >= 0x03050000 0, /*nb_matrix_multiply*/ #endif #if PY_VERSION_HEX >= 0x03050000 0, /*nb_inplace_matrix_multiply*/ #endif }; static PySequenceMethods __pyx_tp_as_sequence_VariantRecordSample = { __pyx_pw_5pysam_7libcbcf_19VariantRecordSample_3__len__, /*sq_length*/ 0, /*sq_concat*/ 0, /*sq_repeat*/ __pyx_sq_item_5pysam_7libcbcf_VariantRecordSample, /*sq_item*/ 0, /*sq_slice*/ 0, /*sq_ass_item*/ 0, /*sq_ass_slice*/ __pyx_pw_5pysam_7libcbcf_19VariantRecordSample_20__contains__, /*sq_contains*/ 0, /*sq_inplace_concat*/ 0, /*sq_inplace_repeat*/ }; static PyMappingMethods __pyx_tp_as_mapping_VariantRecordSample = { __pyx_pw_5pysam_7libcbcf_19VariantRecordSample_3__len__, /*mp_length*/ __pyx_pw_5pysam_7libcbcf_19VariantRecordSample_7__getitem__, /*mp_subscript*/ __pyx_mp_ass_subscript_5pysam_7libcbcf_VariantRecordSample, /*mp_ass_subscript*/ }; static PyTypeObject __pyx_type_5pysam_7libcbcf_VariantRecordSample = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""VariantRecordSample", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf_VariantRecordSample, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ &__pyx_tp_as_number_VariantRecordSample, /*tp_as_number*/ &__pyx_tp_as_sequence_VariantRecordSample, /*tp_as_sequence*/ &__pyx_tp_as_mapping_VariantRecordSample, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("VariantRecordSample(*args, **kwargs)\nData for a single sample from a :class:`VariantRecord` object.\n Provides data accessors for genotypes and a mapping interface\n from format name to values.\n "), /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf_VariantRecordSample, /*tp_traverse*/ __pyx_tp_clear_5pysam_7libcbcf_VariantRecordSample, /*tp_clear*/ __pyx_pw_5pysam_7libcbcf_19VariantRecordSample_40__richcmp__, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ __pyx_pw_5pysam_7libcbcf_19VariantRecordSample_15__iter__, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5pysam_7libcbcf_VariantRecordSample, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5pysam_7libcbcf_VariantRecordSample, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5pysam_7libcbcf_19VariantRecordSample_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf_VariantRecordSample, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf_BaseIndex(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { struct __pyx_obj_5pysam_7libcbcf_BaseIndex *p; PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else if (likely(!__Pyx_PyType_HasFeature(t, Py_TPFLAGS_IS_ABSTRACT))) { o = (*t->tp_alloc)(t, 0); } else { o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); } if (unlikely(!o)) return 0; #endif p = ((struct __pyx_obj_5pysam_7libcbcf_BaseIndex *)o); p->refs = ((PyObject*)Py_None); Py_INCREF(Py_None); p->refmap = ((PyObject*)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf_BaseIndex(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf_BaseIndex *p = (struct __pyx_obj_5pysam_7libcbcf_BaseIndex *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf_BaseIndex) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->refs); Py_CLEAR(p->refmap); #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } static int __pyx_tp_traverse_5pysam_7libcbcf_BaseIndex(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf_BaseIndex *p = (struct __pyx_obj_5pysam_7libcbcf_BaseIndex *)o; if (p->refs) { e = (*v)(p->refs, a); if (e) return e; } if (p->refmap) { e = (*v)(p->refmap, a); if (e) return e; } return 0; } static int __pyx_tp_clear_5pysam_7libcbcf_BaseIndex(PyObject *o) { PyObject* tmp; struct __pyx_obj_5pysam_7libcbcf_BaseIndex *p = (struct __pyx_obj_5pysam_7libcbcf_BaseIndex *)o; tmp = ((PyObject*)p->refs); p->refs = ((PyObject*)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); tmp = ((PyObject*)p->refmap); p->refmap = ((PyObject*)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_sq_item_5pysam_7libcbcf_BaseIndex(PyObject *o, Py_ssize_t i) { PyObject *r; PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0; r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x); Py_DECREF(x); return r; } static PyMethodDef __pyx_methods_5pysam_7libcbcf_BaseIndex[] = { {"get", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_9BaseIndex_11get, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_9BaseIndex_10get}, {"iterkeys", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_9BaseIndex_15iterkeys, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_9BaseIndex_14iterkeys}, {"itervalues", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_9BaseIndex_17itervalues, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_9BaseIndex_16itervalues}, {"iteritems", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_9BaseIndex_20iteritems, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_9BaseIndex_19iteritems}, {"keys", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_9BaseIndex_23keys, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_9BaseIndex_22keys}, {"items", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_9BaseIndex_25items, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_9BaseIndex_24items}, {"values", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_9BaseIndex_27values, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_9BaseIndex_26values}, {"update", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_9BaseIndex_29update, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_9BaseIndex_28update}, {"pop", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_9BaseIndex_31pop, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_9BaseIndex_30pop}, {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_9BaseIndex_33__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_9BaseIndex_32__reduce_cython__}, {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_9BaseIndex_35__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_9BaseIndex_34__setstate_cython__}, {0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf_BaseIndex_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf_BaseIndex}, {Py_nb_bool, (void *)__pyx_pw_5pysam_7libcbcf_9BaseIndex_5__bool__}, {Py_sq_length, (void *)__pyx_pw_5pysam_7libcbcf_9BaseIndex_3__len__}, {Py_sq_item, (void *)__pyx_sq_item_5pysam_7libcbcf_BaseIndex}, {Py_sq_contains, (void *)__pyx_pw_5pysam_7libcbcf_9BaseIndex_13__contains__}, {Py_mp_length, (void *)__pyx_pw_5pysam_7libcbcf_9BaseIndex_3__len__}, {Py_mp_subscript, (void *)__pyx_pw_5pysam_7libcbcf_9BaseIndex_7__getitem__}, {Py_tp_doc, (void *)PyDoc_STR("BaseIndex()")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf_BaseIndex}, {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_7libcbcf_BaseIndex}, {Py_tp_iter, (void *)__pyx_pw_5pysam_7libcbcf_9BaseIndex_9__iter__}, {Py_tp_methods, (void *)__pyx_methods_5pysam_7libcbcf_BaseIndex}, {Py_tp_init, (void *)__pyx_pw_5pysam_7libcbcf_9BaseIndex_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf_BaseIndex}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf_BaseIndex_spec = { "pysam.libcbcf.BaseIndex", sizeof(struct __pyx_obj_5pysam_7libcbcf_BaseIndex), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5pysam_7libcbcf_BaseIndex_slots, }; #else static PyNumberMethods __pyx_tp_as_number_BaseIndex = { 0, /*nb_add*/ 0, /*nb_subtract*/ 0, /*nb_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_divide*/ #endif 0, /*nb_remainder*/ 0, /*nb_divmod*/ 0, /*nb_power*/ 0, /*nb_negative*/ 0, /*nb_positive*/ 0, /*nb_absolute*/ __pyx_pw_5pysam_7libcbcf_9BaseIndex_5__bool__, /*nb_bool*/ 0, /*nb_invert*/ 0, /*nb_lshift*/ 0, /*nb_rshift*/ 0, /*nb_and*/ 0, /*nb_xor*/ 0, /*nb_or*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_coerce*/ #endif 0, /*nb_int*/ #if PY_MAJOR_VERSION < 3 0, /*nb_long*/ #else 0, /*reserved*/ #endif 0, /*nb_float*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_oct*/ #endif #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_hex*/ #endif 0, /*nb_inplace_add*/ 0, /*nb_inplace_subtract*/ 0, /*nb_inplace_multiply*/ #if PY_MAJOR_VERSION < 3 || (CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x03050000) 0, /*nb_inplace_divide*/ #endif 0, /*nb_inplace_remainder*/ 0, /*nb_inplace_power*/ 0, /*nb_inplace_lshift*/ 0, /*nb_inplace_rshift*/ 0, /*nb_inplace_and*/ 0, /*nb_inplace_xor*/ 0, /*nb_inplace_or*/ 0, /*nb_floor_divide*/ 0, /*nb_true_divide*/ 0, /*nb_inplace_floor_divide*/ 0, /*nb_inplace_true_divide*/ 0, /*nb_index*/ #if PY_VERSION_HEX >= 0x03050000 0, /*nb_matrix_multiply*/ #endif #if PY_VERSION_HEX >= 0x03050000 0, /*nb_inplace_matrix_multiply*/ #endif }; static PySequenceMethods __pyx_tp_as_sequence_BaseIndex = { __pyx_pw_5pysam_7libcbcf_9BaseIndex_3__len__, /*sq_length*/ 0, /*sq_concat*/ 0, /*sq_repeat*/ __pyx_sq_item_5pysam_7libcbcf_BaseIndex, /*sq_item*/ 0, /*sq_slice*/ 0, /*sq_ass_item*/ 0, /*sq_ass_slice*/ __pyx_pw_5pysam_7libcbcf_9BaseIndex_13__contains__, /*sq_contains*/ 0, /*sq_inplace_concat*/ 0, /*sq_inplace_repeat*/ }; static PyMappingMethods __pyx_tp_as_mapping_BaseIndex = { __pyx_pw_5pysam_7libcbcf_9BaseIndex_3__len__, /*mp_length*/ __pyx_pw_5pysam_7libcbcf_9BaseIndex_7__getitem__, /*mp_subscript*/ 0, /*mp_ass_subscript*/ }; static PyTypeObject __pyx_type_5pysam_7libcbcf_BaseIndex = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""BaseIndex", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf_BaseIndex), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf_BaseIndex, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ &__pyx_tp_as_number_BaseIndex, /*tp_as_number*/ &__pyx_tp_as_sequence_BaseIndex, /*tp_as_sequence*/ &__pyx_tp_as_mapping_BaseIndex, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("BaseIndex()"), /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf_BaseIndex, /*tp_traverse*/ __pyx_tp_clear_5pysam_7libcbcf_BaseIndex, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ __pyx_pw_5pysam_7libcbcf_9BaseIndex_9__iter__, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5pysam_7libcbcf_BaseIndex, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5pysam_7libcbcf_9BaseIndex_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf_BaseIndex, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf_BCFIndex(PyTypeObject *t, PyObject *a, PyObject *k) { struct __pyx_obj_5pysam_7libcbcf_BCFIndex *p; PyObject *o = __pyx_tp_new_5pysam_7libcbcf_BaseIndex(t, a, k); if (unlikely(!o)) return 0; p = ((struct __pyx_obj_5pysam_7libcbcf_BCFIndex *)o); p->header = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeader *)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf_BCFIndex(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf_BCFIndex *p = (struct __pyx_obj_5pysam_7libcbcf_BCFIndex *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf_BCFIndex) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); { PyObject *etype, *eval, *etb; PyErr_Fetch(&etype, &eval, &etb); __Pyx_SET_REFCNT(o, Py_REFCNT(o) + 1); __pyx_pw_5pysam_7libcbcf_8BCFIndex_3__dealloc__(o); __Pyx_SET_REFCNT(o, Py_REFCNT(o) - 1); PyErr_Restore(etype, eval, etb); } Py_CLEAR(p->header); PyObject_GC_Track(o); __pyx_tp_dealloc_5pysam_7libcbcf_BaseIndex(o); } static int __pyx_tp_traverse_5pysam_7libcbcf_BCFIndex(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf_BCFIndex *p = (struct __pyx_obj_5pysam_7libcbcf_BCFIndex *)o; e = __pyx_tp_traverse_5pysam_7libcbcf_BaseIndex(o, v, a); if (e) return e; if (p->header) { e = (*v)(((PyObject *)p->header), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5pysam_7libcbcf_BCFIndex(PyObject *o) { PyObject* tmp; struct __pyx_obj_5pysam_7libcbcf_BCFIndex *p = (struct __pyx_obj_5pysam_7libcbcf_BCFIndex *)o; __pyx_tp_clear_5pysam_7libcbcf_BaseIndex(o); tmp = ((PyObject*)p->header); p->header = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeader *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_getprop_5pysam_7libcbcf_8BCFIndex_header(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_8BCFIndex_6header_1__get__(o); } static PyMethodDef __pyx_methods_5pysam_7libcbcf_BCFIndex[] = { {"fetch", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_8BCFIndex_5fetch, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_8BCFIndex_4fetch}, {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_8BCFIndex_7__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_8BCFIndex_6__reduce_cython__}, {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_8BCFIndex_9__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_8BCFIndex_8__setstate_cython__}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5pysam_7libcbcf_BCFIndex[] = { {(char *)"header", __pyx_getprop_5pysam_7libcbcf_8BCFIndex_header, 0, (char *)0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf_BCFIndex_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf_BCFIndex}, {Py_tp_doc, (void *)PyDoc_STR("BCFIndex()\nCSI index data structure for BCF files")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf_BCFIndex}, {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_7libcbcf_BCFIndex}, {Py_tp_methods, (void *)__pyx_methods_5pysam_7libcbcf_BCFIndex}, {Py_tp_getset, (void *)__pyx_getsets_5pysam_7libcbcf_BCFIndex}, {Py_tp_init, (void *)__pyx_pw_5pysam_7libcbcf_8BCFIndex_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf_BCFIndex}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf_BCFIndex_spec = { "pysam.libcbcf.BCFIndex", sizeof(struct __pyx_obj_5pysam_7libcbcf_BCFIndex), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5pysam_7libcbcf_BCFIndex_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf_BCFIndex = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""BCFIndex", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf_BCFIndex), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf_BCFIndex, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("BCFIndex()\nCSI index data structure for BCF files"), /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf_BCFIndex, /*tp_traverse*/ __pyx_tp_clear_5pysam_7libcbcf_BCFIndex, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ #if CYTHON_COMPILING_IN_PYPY || 0 __pyx_pw_5pysam_7libcbcf_9BaseIndex_9__iter__, /*tp_iter*/ #else 0, /*tp_iter*/ #endif 0, /*tp_iternext*/ __pyx_methods_5pysam_7libcbcf_BCFIndex, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5pysam_7libcbcf_BCFIndex, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5pysam_7libcbcf_8BCFIndex_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf_BCFIndex, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static void __pyx_tp_dealloc_5pysam_7libcbcf_TabixIndex(PyObject *o) { #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf_TabixIndex) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); { PyObject *etype, *eval, *etb; PyErr_Fetch(&etype, &eval, &etb); __Pyx_SET_REFCNT(o, Py_REFCNT(o) + 1); __pyx_pw_5pysam_7libcbcf_10TabixIndex_3__dealloc__(o); __Pyx_SET_REFCNT(o, Py_REFCNT(o) - 1); PyErr_Restore(etype, eval, etb); } PyObject_GC_Track(o); __pyx_tp_dealloc_5pysam_7libcbcf_BaseIndex(o); } static PyMethodDef __pyx_methods_5pysam_7libcbcf_TabixIndex[] = { {"fetch", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_10TabixIndex_5fetch, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_10TabixIndex_4fetch}, {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_10TabixIndex_7__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_10TabixIndex_6__reduce_cython__}, {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_10TabixIndex_9__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_10TabixIndex_8__setstate_cython__}, {0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf_TabixIndex_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf_TabixIndex}, {Py_tp_doc, (void *)PyDoc_STR("TabixIndex()\nTabix index data structure for VCF files")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf_BaseIndex}, {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_7libcbcf_BaseIndex}, {Py_tp_methods, (void *)__pyx_methods_5pysam_7libcbcf_TabixIndex}, {Py_tp_init, (void *)__pyx_pw_5pysam_7libcbcf_10TabixIndex_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf_BaseIndex}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf_TabixIndex_spec = { "pysam.libcbcf.TabixIndex", sizeof(struct __pyx_obj_5pysam_7libcbcf_TabixIndex), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5pysam_7libcbcf_TabixIndex_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf_TabixIndex = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""TabixIndex", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf_TabixIndex), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf_TabixIndex, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("TabixIndex()\nTabix index data structure for VCF files"), /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf_BaseIndex, /*tp_traverse*/ __pyx_tp_clear_5pysam_7libcbcf_BaseIndex, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ #if CYTHON_COMPILING_IN_PYPY || 0 __pyx_pw_5pysam_7libcbcf_9BaseIndex_9__iter__, /*tp_iter*/ #else 0, /*tp_iter*/ #endif 0, /*tp_iternext*/ __pyx_methods_5pysam_7libcbcf_TabixIndex, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5pysam_7libcbcf_10TabixIndex_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf_BaseIndex, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf_BaseIterator(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { struct __pyx_obj_5pysam_7libcbcf_BaseIterator *p; PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else if (likely(!__Pyx_PyType_HasFeature(t, Py_TPFLAGS_IS_ABSTRACT))) { o = (*t->tp_alloc)(t, 0); } else { o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); } if (unlikely(!o)) return 0; #endif p = ((struct __pyx_obj_5pysam_7libcbcf_BaseIterator *)o); p->bcf = ((struct __pyx_obj_5pysam_7libcbcf_VariantFile *)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf_BaseIterator(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf_BaseIterator *p = (struct __pyx_obj_5pysam_7libcbcf_BaseIterator *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf_BaseIterator) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->bcf); #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } static int __pyx_tp_traverse_5pysam_7libcbcf_BaseIterator(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf_BaseIterator *p = (struct __pyx_obj_5pysam_7libcbcf_BaseIterator *)o; if (p->bcf) { e = (*v)(((PyObject *)p->bcf), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5pysam_7libcbcf_BaseIterator(PyObject *o) { PyObject* tmp; struct __pyx_obj_5pysam_7libcbcf_BaseIterator *p = (struct __pyx_obj_5pysam_7libcbcf_BaseIterator *)o; tmp = ((PyObject*)p->bcf); p->bcf = ((struct __pyx_obj_5pysam_7libcbcf_VariantFile *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyMethodDef __pyx_methods_5pysam_7libcbcf_BaseIterator[] = { {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_12BaseIterator_1__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_12BaseIterator___reduce_cython__}, {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_12BaseIterator_3__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_12BaseIterator_2__setstate_cython__}, {0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf_BaseIterator_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf_BaseIterator}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf_BaseIterator}, {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_7libcbcf_BaseIterator}, {Py_tp_methods, (void *)__pyx_methods_5pysam_7libcbcf_BaseIterator}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf_BaseIterator}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf_BaseIterator_spec = { "pysam.libcbcf.BaseIterator", sizeof(struct __pyx_obj_5pysam_7libcbcf_BaseIterator), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5pysam_7libcbcf_BaseIterator_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf_BaseIterator = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""BaseIterator", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf_BaseIterator), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf_BaseIterator, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf_BaseIterator, /*tp_traverse*/ __pyx_tp_clear_5pysam_7libcbcf_BaseIterator, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ __pyx_methods_5pysam_7libcbcf_BaseIterator, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf_BaseIterator, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf_BCFIterator(PyTypeObject *t, PyObject *a, PyObject *k) { struct __pyx_obj_5pysam_7libcbcf_BCFIterator *p; PyObject *o = __pyx_tp_new_5pysam_7libcbcf_BaseIterator(t, a, k); if (unlikely(!o)) return 0; p = ((struct __pyx_obj_5pysam_7libcbcf_BCFIterator *)o); p->index = ((struct __pyx_obj_5pysam_7libcbcf_BCFIndex *)Py_None); Py_INCREF(Py_None); return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf_BCFIterator(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf_BCFIterator *p = (struct __pyx_obj_5pysam_7libcbcf_BCFIterator *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf_BCFIterator) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); { PyObject *etype, *eval, *etb; PyErr_Fetch(&etype, &eval, &etb); __Pyx_SET_REFCNT(o, Py_REFCNT(o) + 1); __pyx_pw_5pysam_7libcbcf_11BCFIterator_3__dealloc__(o); __Pyx_SET_REFCNT(o, Py_REFCNT(o) - 1); PyErr_Restore(etype, eval, etb); } Py_CLEAR(p->index); PyObject_GC_Track(o); __pyx_tp_dealloc_5pysam_7libcbcf_BaseIterator(o); } static int __pyx_tp_traverse_5pysam_7libcbcf_BCFIterator(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf_BCFIterator *p = (struct __pyx_obj_5pysam_7libcbcf_BCFIterator *)o; e = __pyx_tp_traverse_5pysam_7libcbcf_BaseIterator(o, v, a); if (e) return e; if (p->index) { e = (*v)(((PyObject *)p->index), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5pysam_7libcbcf_BCFIterator(PyObject *o) { PyObject* tmp; struct __pyx_obj_5pysam_7libcbcf_BCFIterator *p = (struct __pyx_obj_5pysam_7libcbcf_BCFIterator *)o; __pyx_tp_clear_5pysam_7libcbcf_BaseIterator(o); tmp = ((PyObject*)p->index); p->index = ((struct __pyx_obj_5pysam_7libcbcf_BCFIndex *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_specialmethod___pyx_pw_5pysam_7libcbcf_11BCFIterator_7__next__(PyObject *self, CYTHON_UNUSED PyObject *arg) { PyObject *res = __pyx_pw_5pysam_7libcbcf_11BCFIterator_7__next__(self); if (!res && !PyErr_Occurred()) { PyErr_SetNone(PyExc_StopIteration); } return res; } static PyMethodDef __pyx_methods_5pysam_7libcbcf_BCFIterator[] = { {"__next__", (PyCFunction)__pyx_specialmethod___pyx_pw_5pysam_7libcbcf_11BCFIterator_7__next__, METH_NOARGS|METH_COEXIST, 0}, {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_11BCFIterator_9__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_11BCFIterator_8__reduce_cython__}, {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_11BCFIterator_11__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_11BCFIterator_10__setstate_cython__}, {0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf_BCFIterator_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf_BCFIterator}, {Py_tp_doc, (void *)PyDoc_STR("BCFIterator(VariantFile bcf, contig=None, start=None, stop=None, reopen=True)")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf_BCFIterator}, {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_7libcbcf_BCFIterator}, {Py_tp_iter, (void *)__pyx_pw_5pysam_7libcbcf_11BCFIterator_5__iter__}, {Py_tp_iternext, (void *)__pyx_pw_5pysam_7libcbcf_11BCFIterator_7__next__}, {Py_tp_methods, (void *)__pyx_methods_5pysam_7libcbcf_BCFIterator}, {Py_tp_init, (void *)__pyx_pw_5pysam_7libcbcf_11BCFIterator_1__init__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf_BCFIterator}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf_BCFIterator_spec = { "pysam.libcbcf.BCFIterator", sizeof(struct __pyx_obj_5pysam_7libcbcf_BCFIterator), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5pysam_7libcbcf_BCFIterator_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf_BCFIterator = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""BCFIterator", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf_BCFIterator), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf_BCFIterator, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("BCFIterator(VariantFile bcf, contig=None, start=None, stop=None, reopen=True)"), /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf_BCFIterator, /*tp_traverse*/ __pyx_tp_clear_5pysam_7libcbcf_BCFIterator, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ __pyx_pw_5pysam_7libcbcf_11BCFIterator_5__iter__, /*tp_iter*/ __pyx_pw_5pysam_7libcbcf_11BCFIterator_7__next__, /*tp_iternext*/ __pyx_methods_5pysam_7libcbcf_BCFIterator, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5pysam_7libcbcf_11BCFIterator_1__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf_BCFIterator, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf_TabixIterator(PyTypeObject *t, PyObject *a, PyObject *k) { struct __pyx_obj_5pysam_7libcbcf_TabixIterator *p; PyObject *o = __pyx_tp_new_5pysam_7libcbcf_BaseIterator(t, a, k); if (unlikely(!o)) return 0; p = ((struct __pyx_obj_5pysam_7libcbcf_TabixIterator *)o); p->index = ((struct __pyx_obj_5pysam_7libcbcf_TabixIndex *)Py_None); Py_INCREF(Py_None); if (unlikely(__pyx_pw_5pysam_7libcbcf_13TabixIterator_1__cinit__(o, a, k) < 0)) goto bad; return o; bad: Py_DECREF(o); o = 0; return NULL; } static void __pyx_tp_dealloc_5pysam_7libcbcf_TabixIterator(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf_TabixIterator *p = (struct __pyx_obj_5pysam_7libcbcf_TabixIterator *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf_TabixIterator) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); { PyObject *etype, *eval, *etb; PyErr_Fetch(&etype, &eval, &etb); __Pyx_SET_REFCNT(o, Py_REFCNT(o) + 1); __pyx_pw_5pysam_7libcbcf_13TabixIterator_5__dealloc__(o); __Pyx_SET_REFCNT(o, Py_REFCNT(o) - 1); PyErr_Restore(etype, eval, etb); } Py_CLEAR(p->index); PyObject_GC_Track(o); __pyx_tp_dealloc_5pysam_7libcbcf_BaseIterator(o); } static int __pyx_tp_traverse_5pysam_7libcbcf_TabixIterator(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf_TabixIterator *p = (struct __pyx_obj_5pysam_7libcbcf_TabixIterator *)o; e = __pyx_tp_traverse_5pysam_7libcbcf_BaseIterator(o, v, a); if (e) return e; if (p->index) { e = (*v)(((PyObject *)p->index), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5pysam_7libcbcf_TabixIterator(PyObject *o) { PyObject* tmp; struct __pyx_obj_5pysam_7libcbcf_TabixIterator *p = (struct __pyx_obj_5pysam_7libcbcf_TabixIterator *)o; __pyx_tp_clear_5pysam_7libcbcf_BaseIterator(o); tmp = ((PyObject*)p->index); p->index = ((struct __pyx_obj_5pysam_7libcbcf_TabixIndex *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_specialmethod___pyx_pw_5pysam_7libcbcf_13TabixIterator_9__next__(PyObject *self, CYTHON_UNUSED PyObject *arg) { PyObject *res = __pyx_pw_5pysam_7libcbcf_13TabixIterator_9__next__(self); if (!res && !PyErr_Occurred()) { PyErr_SetNone(PyExc_StopIteration); } return res; } static PyMethodDef __pyx_methods_5pysam_7libcbcf_TabixIterator[] = { {"__next__", (PyCFunction)__pyx_specialmethod___pyx_pw_5pysam_7libcbcf_13TabixIterator_9__next__, METH_NOARGS|METH_COEXIST, 0}, {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_13TabixIterator_11__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_13TabixIterator_10__reduce_cython__}, {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_13TabixIterator_13__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_13TabixIterator_12__setstate_cython__}, {0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf_TabixIterator_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf_TabixIterator}, {Py_tp_doc, (void *)PyDoc_STR("TabixIterator(VariantFile bcf, contig=None, start=None, stop=None, reopen=True)")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf_TabixIterator}, {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_7libcbcf_TabixIterator}, {Py_tp_iter, (void *)__pyx_pw_5pysam_7libcbcf_13TabixIterator_7__iter__}, {Py_tp_iternext, (void *)__pyx_pw_5pysam_7libcbcf_13TabixIterator_9__next__}, {Py_tp_methods, (void *)__pyx_methods_5pysam_7libcbcf_TabixIterator}, {Py_tp_init, (void *)__pyx_pw_5pysam_7libcbcf_13TabixIterator_3__init__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf_TabixIterator}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf_TabixIterator_spec = { "pysam.libcbcf.TabixIterator", sizeof(struct __pyx_obj_5pysam_7libcbcf_TabixIterator), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, __pyx_type_5pysam_7libcbcf_TabixIterator_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf_TabixIterator = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""TabixIterator", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf_TabixIterator), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf_TabixIterator, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ PyDoc_STR("TabixIterator(VariantFile bcf, contig=None, start=None, stop=None, reopen=True)"), /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf_TabixIterator, /*tp_traverse*/ __pyx_tp_clear_5pysam_7libcbcf_TabixIterator, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ __pyx_pw_5pysam_7libcbcf_13TabixIterator_7__iter__, /*tp_iter*/ __pyx_pw_5pysam_7libcbcf_13TabixIterator_9__next__, /*tp_iternext*/ __pyx_methods_5pysam_7libcbcf_TabixIterator, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5pysam_7libcbcf_13TabixIterator_3__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf_TabixIterator, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif static struct __pyx_vtabstruct_5pysam_7libcbcf_VariantFile __pyx_vtable_5pysam_7libcbcf_VariantFile; static PyObject *__pyx_tp_new_5pysam_7libcbcf_VariantFile(PyTypeObject *t, PyObject *a, PyObject *k) { struct __pyx_obj_5pysam_7libcbcf_VariantFile *p; PyObject *o = __Pyx_PyType_GetSlot(__pyx_ptype_5pysam_10libchtslib_HTSFile, tp_new, newfunc)(t, a, k); if (unlikely(!o)) return 0; p = ((struct __pyx_obj_5pysam_7libcbcf_VariantFile *)o); p->__pyx_base.__pyx_vtab = (struct __pyx_vtabstruct_5pysam_10libchtslib_HTSFile*)__pyx_vtabptr_5pysam_7libcbcf_VariantFile; p->header = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeader *)Py_None); Py_INCREF(Py_None); p->index = ((struct __pyx_obj_5pysam_7libcbcf_BaseIndex *)Py_None); Py_INCREF(Py_None); if (unlikely(__pyx_pw_5pysam_7libcbcf_11VariantFile_1__cinit__(o, a, k) < 0)) goto bad; return o; bad: Py_DECREF(o); o = 0; return NULL; } static void __pyx_tp_dealloc_5pysam_7libcbcf_VariantFile(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf_VariantFile *p = (struct __pyx_obj_5pysam_7libcbcf_VariantFile *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf_VariantFile) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); { PyObject *etype, *eval, *etb; PyErr_Fetch(&etype, &eval, &etb); __Pyx_SET_REFCNT(o, Py_REFCNT(o) + 1); __pyx_pw_5pysam_7libcbcf_11VariantFile_5__dealloc__(o); __Pyx_SET_REFCNT(o, Py_REFCNT(o) - 1); PyErr_Restore(etype, eval, etb); } Py_CLEAR(p->header); Py_CLEAR(p->index); #if PY_MAJOR_VERSION < 3 if (!(__pyx_ptype_5pysam_10libchtslib_HTSFile) || PyType_IS_GC(__pyx_ptype_5pysam_10libchtslib_HTSFile)) PyObject_GC_Track(o); #else if (PyType_IS_GC(__pyx_ptype_5pysam_10libchtslib_HTSFile)) PyObject_GC_Track(o); #endif if (likely(__pyx_ptype_5pysam_10libchtslib_HTSFile)) __Pyx_PyType_GetSlot(__pyx_ptype_5pysam_10libchtslib_HTSFile, tp_dealloc, destructor)(o); else __Pyx_call_next_tp_dealloc(o, __pyx_tp_dealloc_5pysam_7libcbcf_VariantFile); } static int __pyx_tp_traverse_5pysam_7libcbcf_VariantFile(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf_VariantFile *p = (struct __pyx_obj_5pysam_7libcbcf_VariantFile *)o; e = ((likely(__pyx_ptype_5pysam_10libchtslib_HTSFile)) ? ((__pyx_ptype_5pysam_10libchtslib_HTSFile->tp_traverse) ? __pyx_ptype_5pysam_10libchtslib_HTSFile->tp_traverse(o, v, a) : 0) : __Pyx_call_next_tp_traverse(o, v, a, __pyx_tp_traverse_5pysam_7libcbcf_VariantFile)); if (e) return e; if (p->header) { e = (*v)(((PyObject *)p->header), a); if (e) return e; } if (p->index) { e = (*v)(((PyObject *)p->index), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5pysam_7libcbcf_VariantFile(PyObject *o) { PyObject* tmp; struct __pyx_obj_5pysam_7libcbcf_VariantFile *p = (struct __pyx_obj_5pysam_7libcbcf_VariantFile *)o; if (likely(__pyx_ptype_5pysam_10libchtslib_HTSFile)) { if (__pyx_ptype_5pysam_10libchtslib_HTSFile->tp_clear) __pyx_ptype_5pysam_10libchtslib_HTSFile->tp_clear(o); } else __Pyx_call_next_tp_clear(o, __pyx_tp_clear_5pysam_7libcbcf_VariantFile); tmp = ((PyObject*)p->header); p->header = ((struct __pyx_obj_5pysam_7libcbcf_VariantHeader *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); tmp = ((PyObject*)p->index); p->index = ((struct __pyx_obj_5pysam_7libcbcf_BaseIndex *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } static PyObject *__pyx_getprop_5pysam_7libcbcf_11VariantFile_header(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_11VariantFile_6header_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_11VariantFile_index(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_11VariantFile_5index_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_11VariantFile_drop_samples(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_11VariantFile_12drop_samples_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_11VariantFile_is_reading(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_11VariantFile_10is_reading_1__get__(o); } static PyObject *__pyx_getprop_5pysam_7libcbcf_11VariantFile_header_written(PyObject *o, CYTHON_UNUSED void *x) { return __pyx_pw_5pysam_7libcbcf_11VariantFile_14header_written_1__get__(o); } static PyObject *__pyx_specialmethod___pyx_pw_5pysam_7libcbcf_11VariantFile_11__next__(PyObject *self, CYTHON_UNUSED PyObject *arg) { PyObject *res = __pyx_pw_5pysam_7libcbcf_11VariantFile_11__next__(self); if (!res && !PyErr_Occurred()) { PyErr_SetNone(PyExc_StopIteration); } return res; } static PyMethodDef __pyx_methods_5pysam_7libcbcf_VariantFile[] = { {"close", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_11VariantFile_7close, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_11VariantFile_6close}, {"__next__", (PyCFunction)__pyx_specialmethod___pyx_pw_5pysam_7libcbcf_11VariantFile_11__next__, METH_NOARGS|METH_COEXIST, 0}, {"copy", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_11VariantFile_13copy, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_11VariantFile_12copy}, {"open", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_11VariantFile_15open, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_11VariantFile_14open}, {"reset", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_11VariantFile_17reset, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_11VariantFile_16reset}, {"is_valid_tid", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_11VariantFile_19is_valid_tid, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_11VariantFile_18is_valid_tid}, {"get_tid", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_11VariantFile_21get_tid, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_11VariantFile_20get_tid}, {"get_reference_name", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_11VariantFile_23get_reference_name, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_11VariantFile_22get_reference_name}, {"fetch", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_11VariantFile_25fetch, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_11VariantFile_24fetch}, {"new_record", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_5pysam_7libcbcf_11VariantFile_27new_record, METH_VARARGS|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_11VariantFile_26new_record}, {"subset_samples", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_11VariantFile_31subset_samples, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_11VariantFile_30subset_samples}, {"__reduce_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_11VariantFile_33__reduce_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_11VariantFile_32__reduce_cython__}, {"__setstate_cython__", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_5pysam_7libcbcf_11VariantFile_35__setstate_cython__, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_5pysam_7libcbcf_11VariantFile_34__setstate_cython__}, {0, 0, 0, 0} }; static struct PyGetSetDef __pyx_getsets_5pysam_7libcbcf_VariantFile[] = { {(char *)"header", __pyx_getprop_5pysam_7libcbcf_11VariantFile_header, 0, (char *)0, 0}, {(char *)"index", __pyx_getprop_5pysam_7libcbcf_11VariantFile_index, 0, (char *)0, 0}, {(char *)"drop_samples", __pyx_getprop_5pysam_7libcbcf_11VariantFile_drop_samples, 0, (char *)0, 0}, {(char *)"is_reading", __pyx_getprop_5pysam_7libcbcf_11VariantFile_is_reading, 0, (char *)0, 0}, {(char *)"header_written", __pyx_getprop_5pysam_7libcbcf_11VariantFile_header_written, 0, (char *)0, 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf_VariantFile_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf_VariantFile}, {Py_tp_doc, (void *)PyDoc_STR("VariantFile(*args, **kwargs)\n*(filename, mode=None, index_filename=None, header=None, drop_samples=False,\n duplicate_filehandle=True, ignore_truncation=False, threads=1)*\n\n A :term:`VCF`/:term:`BCF` formatted file. The file is automatically\n opened.\n\n If an index for a variant file exists (.csi or .tbi), it will be\n opened automatically. Without an index random access to records\n via :meth:`fetch` is disabled.\n\n For writing, a :class:`VariantHeader` object must be provided,\n typically obtained from another :term:`VCF` file/:term:`BCF`\n file.\n\n Parameters\n ----------\n mode : string\n *mode* should be ``r`` for reading or ``w`` for writing. The default is\n text mode (:term:`VCF`). For binary (:term:`BCF`) I/O you should append\n ``b`` for compressed or ``u`` for uncompressed :term:`BCF` output.\n\n If ``b`` is present, it must immediately follow ``r`` or ``w``. Valid\n modes are ``r``, ``w``, ``wh``, ``rb``, ``wb``, ``wbu`` and ``wb0``.\n For instance, to open a :term:`BCF` formatted file for reading, type::\n\n f = pysam.VariantFile('ex1.bcf','r')\n\n If mode is not specified, we will try to auto-detect the file type. All\n of the following should work::\n\n f1 = pysam.VariantFile('ex1.bcf')\n f2 = pysam.VariantFile('ex1.vcf')\n f3 = pysam.VariantFile('ex1.vcf.gz')\n\n index_filename : string\n Explicit path to an index file.\n\n header : VariantHeader\n :class:`VariantHeader` object required for writing.\n\n drop_samples: bool\n Ignore sample information when reading.\n\n duplicate_filehandle: bool\n By default, file handles passed either directly or through\n File-like objects will be duplicated before passing them to\n htslib. The duplication prevents issues where the same stream\n will be closed by htslib and through destruction of the\n hig""h-level python object. Set to False to turn off\n duplication.\n\n ignore_truncation: bool\n Issue a warning, instead of raising an error if the current file\n appears to be truncated due to a missing EOF marker. Only applies\n to bgzipped formats. (Default=False)\n\n threads: integer\n Number of threads to use for compressing/decompressing VCF/BCF files.\n Setting threads to > 1 cannot be combined with `ignore_truncation`.\n (Default=1)\n\n ")}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf_VariantFile}, {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_7libcbcf_VariantFile}, {Py_tp_iter, (void *)__pyx_pw_5pysam_7libcbcf_11VariantFile_9__iter__}, {Py_tp_iternext, (void *)__pyx_pw_5pysam_7libcbcf_11VariantFile_11__next__}, {Py_tp_methods, (void *)__pyx_methods_5pysam_7libcbcf_VariantFile}, {Py_tp_getset, (void *)__pyx_getsets_5pysam_7libcbcf_VariantFile}, {Py_tp_init, (void *)__pyx_pw_5pysam_7libcbcf_11VariantFile_3__init__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf_VariantFile}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf_VariantFile_spec = { "pysam.libcbcf.VariantFile", sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantFile), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf_VariantFile_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf_VariantFile = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""VariantFile", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf_VariantFile), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf_VariantFile, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ PyDoc_STR("VariantFile(*args, **kwargs)\n*(filename, mode=None, index_filename=None, header=None, drop_samples=False,\n duplicate_filehandle=True, ignore_truncation=False, threads=1)*\n\n A :term:`VCF`/:term:`BCF` formatted file. The file is automatically\n opened.\n\n If an index for a variant file exists (.csi or .tbi), it will be\n opened automatically. Without an index random access to records\n via :meth:`fetch` is disabled.\n\n For writing, a :class:`VariantHeader` object must be provided,\n typically obtained from another :term:`VCF` file/:term:`BCF`\n file.\n\n Parameters\n ----------\n mode : string\n *mode* should be ``r`` for reading or ``w`` for writing. The default is\n text mode (:term:`VCF`). For binary (:term:`BCF`) I/O you should append\n ``b`` for compressed or ``u`` for uncompressed :term:`BCF` output.\n\n If ``b`` is present, it must immediately follow ``r`` or ``w``. Valid\n modes are ``r``, ``w``, ``wh``, ``rb``, ``wb``, ``wbu`` and ``wb0``.\n For instance, to open a :term:`BCF` formatted file for reading, type::\n\n f = pysam.VariantFile('ex1.bcf','r')\n\n If mode is not specified, we will try to auto-detect the file type. All\n of the following should work::\n\n f1 = pysam.VariantFile('ex1.bcf')\n f2 = pysam.VariantFile('ex1.vcf')\n f3 = pysam.VariantFile('ex1.vcf.gz')\n\n index_filename : string\n Explicit path to an index file.\n\n header : VariantHeader\n :class:`VariantHeader` object required for writing.\n\n drop_samples: bool\n Ignore sample information when reading.\n\n duplicate_filehandle: bool\n By default, file handles passed either directly or through\n File-like objects will be duplicated before passing them to\n htslib. The duplication prevents issues where the same stream\n will be closed by htslib and through destruction of the\n hig""h-level python object. Set to False to turn off\n duplication.\n\n ignore_truncation: bool\n Issue a warning, instead of raising an error if the current file\n appears to be truncated due to a missing EOF marker. Only applies\n to bgzipped formats. (Default=False)\n\n threads: integer\n Number of threads to use for compressing/decompressing VCF/BCF files.\n Setting threads to > 1 cannot be combined with `ignore_truncation`.\n (Default=1)\n\n "), /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf_VariantFile, /*tp_traverse*/ __pyx_tp_clear_5pysam_7libcbcf_VariantFile, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ __pyx_pw_5pysam_7libcbcf_11VariantFile_9__iter__, /*tp_iter*/ __pyx_pw_5pysam_7libcbcf_11VariantFile_11__next__, /*tp_iternext*/ __pyx_methods_5pysam_7libcbcf_VariantFile, /*tp_methods*/ 0, /*tp_members*/ __pyx_getsets_5pysam_7libcbcf_VariantFile, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif __pyx_pw_5pysam_7libcbcf_11VariantFile_3__init__, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf_VariantFile, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple)); (void) PyObject_INIT(o, t); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple(PyObject *o) { #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && (!PyType_IS_GC(Py_TYPE(o)) || !__Pyx_PyObject_GC_IsFinalized(o))) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple_spec = { "pysam.libcbcf.__pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ 0, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct____pyx_f_5pysam_7libcbcf_char_array_to_tuple, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_1_genexpr *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_1_genexpr[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_1_genexpr = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_1_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_1_genexpr > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_1_genexpr)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_1_genexpr[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_1_genexpr]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_1_genexpr)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_1_genexpr(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_1_genexpr *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_1_genexpr *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_1_genexpr) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_outer_scope); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_1_genexpr < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_1_genexpr)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_1_genexpr[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_1_genexpr++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_1_genexpr *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_1_genexpr(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_1_genexpr *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_1_genexpr *)o; if (p->__pyx_outer_scope) { e = (*v)(((PyObject *)p->__pyx_outer_scope), a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_1_genexpr_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_1_genexpr}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_1_genexpr}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_1_genexpr}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_1_genexpr_spec = { "pysam.libcbcf.__pyx_scope_struct_1_genexpr", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_1_genexpr), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_1_genexpr_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_1_genexpr = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_1_genexpr", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_1_genexpr), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_1_genexpr, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_1_genexpr, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_1_genexpr, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_2_genexpr *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_2_genexpr[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_2_genexpr = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_2_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_2_genexpr > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_2_genexpr)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_2_genexpr[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_2_genexpr]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_2_genexpr)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_2_genexpr(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_2_genexpr *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_2_genexpr *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_2_genexpr) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_genexpr_arg_0); Py_CLEAR(p->__pyx_v_v); Py_CLEAR(p->__pyx_t_0); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_2_genexpr < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_2_genexpr)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_2_genexpr[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_2_genexpr++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_2_genexpr *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_2_genexpr(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_2_genexpr *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_2_genexpr *)o; if (p->__pyx_v_v) { e = (*v)(p->__pyx_v_v, a); if (e) return e; } if (p->__pyx_t_0) { e = (*v)(p->__pyx_t_0, a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_2_genexpr_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_2_genexpr}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_2_genexpr}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_2_genexpr}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_2_genexpr_spec = { "pysam.libcbcf.__pyx_scope_struct_2_genexpr", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_2_genexpr), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_2_genexpr_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_2_genexpr = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_2_genexpr", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_2_genexpr), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_2_genexpr, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_2_genexpr, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_2_genexpr, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_3_genexpr *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_3_genexpr[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_3_genexpr = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_3_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_3_genexpr > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_3_genexpr)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_3_genexpr[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_3_genexpr]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_3_genexpr)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_3_genexpr(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_3_genexpr *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_3_genexpr *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_3_genexpr) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_genexpr_arg_0); Py_CLEAR(p->__pyx_v_v); Py_CLEAR(p->__pyx_t_0); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_3_genexpr < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_3_genexpr)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_3_genexpr[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_3_genexpr++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_3_genexpr *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_3_genexpr(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_3_genexpr *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_3_genexpr *)o; if (p->__pyx_genexpr_arg_0) { e = (*v)(p->__pyx_genexpr_arg_0, a); if (e) return e; } if (p->__pyx_v_v) { e = (*v)(p->__pyx_v_v, a); if (e) return e; } if (p->__pyx_t_0) { e = (*v)(p->__pyx_t_0, a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_3_genexpr_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_3_genexpr}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_3_genexpr}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_3_genexpr}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_3_genexpr_spec = { "pysam.libcbcf.__pyx_scope_struct_3_genexpr", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_3_genexpr), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_3_genexpr_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_3_genexpr = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_3_genexpr", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_3_genexpr), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_3_genexpr, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_3_genexpr, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_3_genexpr, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_4_genexpr *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_4_genexpr[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_4_genexpr = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_4_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_4_genexpr > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_4_genexpr)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_4_genexpr[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_4_genexpr]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_4_genexpr)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_4_genexpr(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_4_genexpr *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_4_genexpr *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_4_genexpr) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_genexpr_arg_0); Py_CLEAR(p->__pyx_v_v); Py_CLEAR(p->__pyx_t_0); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_4_genexpr < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_4_genexpr)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_4_genexpr[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_4_genexpr++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_4_genexpr *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_4_genexpr(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_4_genexpr *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_4_genexpr *)o; if (p->__pyx_genexpr_arg_0) { e = (*v)(p->__pyx_genexpr_arg_0, a); if (e) return e; } if (p->__pyx_v_v) { e = (*v)(p->__pyx_v_v, a); if (e) return e; } if (p->__pyx_t_0) { e = (*v)(p->__pyx_t_0, a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_4_genexpr_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_4_genexpr}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_4_genexpr}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_4_genexpr}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_4_genexpr_spec = { "pysam.libcbcf.__pyx_scope_struct_4_genexpr", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_4_genexpr), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_4_genexpr_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_4_genexpr = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_4_genexpr", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_4_genexpr), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_4_genexpr, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_4_genexpr, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_4_genexpr, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_5___get__ *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_5___get__[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_5___get__ = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_5___get__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_5___get__ > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_5___get__)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_5___get__[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_5___get__]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_5___get__)); (void) PyObject_INIT(o, t); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_5___get__(PyObject *o) { #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && (!PyType_IS_GC(Py_TYPE(o)) || !__Pyx_PyObject_GC_IsFinalized(o))) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_5___get__) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_5___get__ < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_5___get__)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_5___get__[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_5___get__++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_5___get__ *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_5___get___slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_5___get__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_5___get__}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_5___get___spec = { "pysam.libcbcf.__pyx_scope_struct_5___get__", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_5___get__), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_5___get___slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_5___get__ = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_5___get__", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_5___get__), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_5___get__, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ 0, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_5___get__, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_6_genexpr *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_6_genexpr[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_6_genexpr = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_6_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_6_genexpr > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_6_genexpr)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_6_genexpr[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_6_genexpr]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_6_genexpr)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_6_genexpr(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_6_genexpr *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_6_genexpr *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_6_genexpr) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_outer_scope); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_6_genexpr < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_6_genexpr)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_6_genexpr[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_6_genexpr++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_6_genexpr *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_6_genexpr(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_6_genexpr *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_6_genexpr *)o; if (p->__pyx_outer_scope) { e = (*v)(((PyObject *)p->__pyx_outer_scope), a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_6_genexpr_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_6_genexpr}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_6_genexpr}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_6_genexpr}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_6_genexpr_spec = { "pysam.libcbcf.__pyx_scope_struct_6_genexpr", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_6_genexpr), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_6_genexpr_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_6_genexpr = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_6_genexpr", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_6_genexpr), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_6_genexpr, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_6_genexpr, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_6_genexpr, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_7___iter__ *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_7___iter__[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_7___iter__ = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_7___iter__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_7___iter__ > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_7___iter__)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_7___iter__[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_7___iter__]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_7___iter__)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_7___iter__(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_7___iter__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_7___iter__ *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_7___iter__) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_self); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_7___iter__ < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_7___iter__)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_7___iter__[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_7___iter__++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_7___iter__ *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_7___iter__(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_7___iter__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_7___iter__ *)o; if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_7___iter___slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_7___iter__}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_7___iter__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_7___iter__}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_7___iter___spec = { "pysam.libcbcf.__pyx_scope_struct_7___iter__", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_7___iter__), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_7___iter___slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_7___iter__ = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_7___iter__", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_7___iter__), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_7___iter__, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_7___iter__, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_7___iter__, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_8_itervalues *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_8_itervalues[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_8_itervalues = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_8_itervalues(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_8_itervalues > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_8_itervalues)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_8_itervalues[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_8_itervalues]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_8_itervalues)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_8_itervalues(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_8_itervalues *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_8_itervalues *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_8_itervalues) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_self); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_8_itervalues < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_8_itervalues)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_8_itervalues[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_8_itervalues++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_8_itervalues *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_8_itervalues(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_8_itervalues *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_8_itervalues *)o; if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_8_itervalues_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_8_itervalues}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_8_itervalues}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_8_itervalues}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_8_itervalues_spec = { "pysam.libcbcf.__pyx_scope_struct_8_itervalues", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_8_itervalues), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_8_itervalues_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_8_itervalues = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_8_itervalues", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_8_itervalues), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_8_itervalues, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_8_itervalues, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_8_itervalues, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_9_iteritems *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_9_iteritems[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_9_iteritems = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_9_iteritems(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_9_iteritems > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_9_iteritems)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_9_iteritems[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_9_iteritems]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_9_iteritems)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_9_iteritems(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_9_iteritems *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_9_iteritems *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_9_iteritems) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_self); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_9_iteritems < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_9_iteritems)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_9_iteritems[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_9_iteritems++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_9_iteritems *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_9_iteritems(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_9_iteritems *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_9_iteritems *)o; if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_9_iteritems_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_9_iteritems}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_9_iteritems}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_9_iteritems}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_9_iteritems_spec = { "pysam.libcbcf.__pyx_scope_struct_9_iteritems", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_9_iteritems), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_9_iteritems_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_9_iteritems = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_9_iteritems", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_9_iteritems), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_9_iteritems, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_9_iteritems, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_9_iteritems, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_10___iter__ *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_10___iter__[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_10___iter__ = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_10___iter__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_10___iter__ > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_10___iter__)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_10___iter__[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_10___iter__]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_10___iter__)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_10___iter__(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_10___iter__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_10___iter__ *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_10___iter__) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_self); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_10___iter__ < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_10___iter__)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_10___iter__[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_10___iter__++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_10___iter__ *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_10___iter__(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_10___iter__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_10___iter__ *)o; if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_10___iter___slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_10___iter__}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_10___iter__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_10___iter__}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_10___iter___spec = { "pysam.libcbcf.__pyx_scope_struct_10___iter__", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_10___iter__), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_10___iter___slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_10___iter__ = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_10___iter__", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_10___iter__), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_10___iter__, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_10___iter__, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_10___iter__, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_11___iter__ *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_11___iter__[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_11___iter__ = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_11___iter__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_11___iter__ > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_11___iter__)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_11___iter__[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_11___iter__]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_11___iter__)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_11___iter__(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_11___iter__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_11___iter__ *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_11___iter__) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_self); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_11___iter__ < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_11___iter__)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_11___iter__[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_11___iter__++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_11___iter__ *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_11___iter__(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_11___iter__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_11___iter__ *)o; if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_11___iter___slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_11___iter__}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_11___iter__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_11___iter__}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_11___iter___spec = { "pysam.libcbcf.__pyx_scope_struct_11___iter__", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_11___iter__), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_11___iter___slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_11___iter__ = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_11___iter__", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_11___iter__), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_11___iter__, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_11___iter__, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_11___iter__, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_12_itervalues *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_12_itervalues[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_12_itervalues = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_12_itervalues(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_12_itervalues > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_12_itervalues)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_12_itervalues[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_12_itervalues]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_12_itervalues)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_12_itervalues(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_12_itervalues *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_12_itervalues *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_12_itervalues) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_key); Py_CLEAR(p->__pyx_v_self); Py_CLEAR(p->__pyx_t_0); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_12_itervalues < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_12_itervalues)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_12_itervalues[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_12_itervalues++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_12_itervalues *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_12_itervalues(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_12_itervalues *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_12_itervalues *)o; if (p->__pyx_v_key) { e = (*v)(p->__pyx_v_key, a); if (e) return e; } if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } if (p->__pyx_t_0) { e = (*v)(p->__pyx_t_0, a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_12_itervalues_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_12_itervalues}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_12_itervalues}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_12_itervalues}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_12_itervalues_spec = { "pysam.libcbcf.__pyx_scope_struct_12_itervalues", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_12_itervalues), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_12_itervalues_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_12_itervalues = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_12_itervalues", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_12_itervalues), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_12_itervalues, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_12_itervalues, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_12_itervalues, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_13_iteritems *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_13_iteritems[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_13_iteritems = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_13_iteritems(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_13_iteritems > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_13_iteritems)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_13_iteritems[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_13_iteritems]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_13_iteritems)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_13_iteritems(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_13_iteritems *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_13_iteritems *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_13_iteritems) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_key); Py_CLEAR(p->__pyx_v_self); Py_CLEAR(p->__pyx_t_0); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_13_iteritems < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_13_iteritems)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_13_iteritems[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_13_iteritems++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_13_iteritems *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_13_iteritems(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_13_iteritems *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_13_iteritems *)o; if (p->__pyx_v_key) { e = (*v)(p->__pyx_v_key, a); if (e) return e; } if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } if (p->__pyx_t_0) { e = (*v)(p->__pyx_t_0, a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_13_iteritems_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_13_iteritems}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_13_iteritems}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_13_iteritems}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_13_iteritems_spec = { "pysam.libcbcf.__pyx_scope_struct_13_iteritems", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_13_iteritems), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_13_iteritems_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_13_iteritems = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_13_iteritems", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_13_iteritems), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_13_iteritems, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_13_iteritems, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_13_iteritems, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_14___iter__ *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_14___iter__[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_14___iter__ = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_14___iter__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_14___iter__ > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_14___iter__)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_14___iter__[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_14___iter__]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_14___iter__)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_14___iter__(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_14___iter__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_14___iter__ *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_14___iter__) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_self); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_14___iter__ < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_14___iter__)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_14___iter__[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_14___iter__++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_14___iter__ *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_14___iter__(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_14___iter__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_14___iter__ *)o; if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_14___iter___slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_14___iter__}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_14___iter__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_14___iter__}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_14___iter___spec = { "pysam.libcbcf.__pyx_scope_struct_14___iter__", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_14___iter__), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_14___iter___slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_14___iter__ = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_14___iter__", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_14___iter__), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_14___iter__, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_14___iter__, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_14___iter__, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_15_itervalues *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_15_itervalues[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_15_itervalues = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_15_itervalues(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_15_itervalues > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_15_itervalues)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_15_itervalues[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_15_itervalues]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_15_itervalues)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_15_itervalues(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_15_itervalues *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_15_itervalues *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_15_itervalues) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_key); Py_CLEAR(p->__pyx_v_self); Py_CLEAR(p->__pyx_t_0); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_15_itervalues < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_15_itervalues)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_15_itervalues[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_15_itervalues++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_15_itervalues *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_15_itervalues(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_15_itervalues *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_15_itervalues *)o; if (p->__pyx_v_key) { e = (*v)(p->__pyx_v_key, a); if (e) return e; } if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } if (p->__pyx_t_0) { e = (*v)(p->__pyx_t_0, a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_15_itervalues_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_15_itervalues}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_15_itervalues}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_15_itervalues}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_15_itervalues_spec = { "pysam.libcbcf.__pyx_scope_struct_15_itervalues", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_15_itervalues), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_15_itervalues_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_15_itervalues = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_15_itervalues", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_15_itervalues), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_15_itervalues, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_15_itervalues, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_15_itervalues, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_16_iteritems *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_16_iteritems[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_16_iteritems = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_16_iteritems(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_16_iteritems > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_16_iteritems)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_16_iteritems[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_16_iteritems]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_16_iteritems)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_16_iteritems(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_16_iteritems *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_16_iteritems *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_16_iteritems) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_key); Py_CLEAR(p->__pyx_v_self); Py_CLEAR(p->__pyx_t_0); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_16_iteritems < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_16_iteritems)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_16_iteritems[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_16_iteritems++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_16_iteritems *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_16_iteritems(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_16_iteritems *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_16_iteritems *)o; if (p->__pyx_v_key) { e = (*v)(p->__pyx_v_key, a); if (e) return e; } if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } if (p->__pyx_t_0) { e = (*v)(p->__pyx_t_0, a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_16_iteritems_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_16_iteritems}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_16_iteritems}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_16_iteritems}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_16_iteritems_spec = { "pysam.libcbcf.__pyx_scope_struct_16_iteritems", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_16_iteritems), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_16_iteritems_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_16_iteritems = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_16_iteritems", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_16_iteritems), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_16_iteritems, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_16_iteritems, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_16_iteritems, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_17___iter__ *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_17___iter__[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_17___iter__ = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_17___iter__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_17___iter__ > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_17___iter__)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_17___iter__[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_17___iter__]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_17___iter__)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_17___iter__(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_17___iter__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_17___iter__ *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_17___iter__) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_self); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_17___iter__ < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_17___iter__)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_17___iter__[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_17___iter__++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_17___iter__ *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_17___iter__(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_17___iter__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_17___iter__ *)o; if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_17___iter___slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_17___iter__}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_17___iter__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_17___iter__}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_17___iter___spec = { "pysam.libcbcf.__pyx_scope_struct_17___iter__", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_17___iter__), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_17___iter___slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_17___iter__ = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_17___iter__", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_17___iter__), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_17___iter__, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_17___iter__, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_17___iter__, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_18___iter__ *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_18___iter__[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_18___iter__ = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_18___iter__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_18___iter__ > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_18___iter__)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_18___iter__[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_18___iter__]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_18___iter__)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_18___iter__(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_18___iter__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_18___iter__ *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_18___iter__) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_self); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_18___iter__ < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_18___iter__)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_18___iter__[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_18___iter__++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_18___iter__ *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_18___iter__(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_18___iter__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_18___iter__ *)o; if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_18___iter___slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_18___iter__}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_18___iter__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_18___iter__}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_18___iter___spec = { "pysam.libcbcf.__pyx_scope_struct_18___iter__", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_18___iter__), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_18___iter___slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_18___iter__ = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_18___iter__", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_18___iter__), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_18___iter__, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_18___iter__, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_18___iter__, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_19_itervalues *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_19_itervalues[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_19_itervalues = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_19_itervalues(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_19_itervalues > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_19_itervalues)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_19_itervalues[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_19_itervalues]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_19_itervalues)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_19_itervalues(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_19_itervalues *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_19_itervalues *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_19_itervalues) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_key); Py_CLEAR(p->__pyx_v_self); Py_CLEAR(p->__pyx_t_0); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_19_itervalues < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_19_itervalues)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_19_itervalues[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_19_itervalues++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_19_itervalues *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_19_itervalues(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_19_itervalues *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_19_itervalues *)o; if (p->__pyx_v_key) { e = (*v)(p->__pyx_v_key, a); if (e) return e; } if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } if (p->__pyx_t_0) { e = (*v)(p->__pyx_t_0, a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_19_itervalues_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_19_itervalues}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_19_itervalues}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_19_itervalues}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_19_itervalues_spec = { "pysam.libcbcf.__pyx_scope_struct_19_itervalues", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_19_itervalues), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_19_itervalues_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_19_itervalues = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_19_itervalues", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_19_itervalues), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_19_itervalues, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_19_itervalues, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_19_itervalues, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_20_iteritems *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_20_iteritems[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_20_iteritems = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_20_iteritems(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_20_iteritems > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_20_iteritems)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_20_iteritems[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_20_iteritems]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_20_iteritems)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_20_iteritems(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_20_iteritems *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_20_iteritems *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_20_iteritems) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_key); Py_CLEAR(p->__pyx_v_self); Py_CLEAR(p->__pyx_t_0); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_20_iteritems < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_20_iteritems)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_20_iteritems[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_20_iteritems++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_20_iteritems *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_20_iteritems(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_20_iteritems *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_20_iteritems *)o; if (p->__pyx_v_key) { e = (*v)(p->__pyx_v_key, a); if (e) return e; } if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } if (p->__pyx_t_0) { e = (*v)(p->__pyx_t_0, a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_20_iteritems_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_20_iteritems}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_20_iteritems}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_20_iteritems}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_20_iteritems_spec = { "pysam.libcbcf.__pyx_scope_struct_20_iteritems", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_20_iteritems), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_20_iteritems_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_20_iteritems = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_20_iteritems", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_20_iteritems), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_20_iteritems, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_20_iteritems, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_20_iteritems, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_21___iter__ *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_21___iter__[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_21___iter__ = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_21___iter__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_21___iter__ > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_21___iter__)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_21___iter__[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_21___iter__]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_21___iter__)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_21___iter__(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_21___iter__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_21___iter__ *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_21___iter__) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_self); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_21___iter__ < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_21___iter__)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_21___iter__[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_21___iter__++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_21___iter__ *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_21___iter__(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_21___iter__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_21___iter__ *)o; if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_21___iter___slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_21___iter__}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_21___iter__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_21___iter__}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_21___iter___spec = { "pysam.libcbcf.__pyx_scope_struct_21___iter__", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_21___iter__), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_21___iter___slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_21___iter__ = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_21___iter__", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_21___iter__), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_21___iter__, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_21___iter__, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_21___iter__, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_22_itervalues *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_22_itervalues[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_22_itervalues = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_22_itervalues(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_22_itervalues > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_22_itervalues)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_22_itervalues[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_22_itervalues]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_22_itervalues)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_22_itervalues(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_22_itervalues *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_22_itervalues *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_22_itervalues) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_key); Py_CLEAR(p->__pyx_v_self); Py_CLEAR(p->__pyx_t_0); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_22_itervalues < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_22_itervalues)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_22_itervalues[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_22_itervalues++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_22_itervalues *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_22_itervalues(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_22_itervalues *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_22_itervalues *)o; if (p->__pyx_v_key) { e = (*v)(p->__pyx_v_key, a); if (e) return e; } if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } if (p->__pyx_t_0) { e = (*v)(p->__pyx_t_0, a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_22_itervalues_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_22_itervalues}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_22_itervalues}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_22_itervalues}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_22_itervalues_spec = { "pysam.libcbcf.__pyx_scope_struct_22_itervalues", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_22_itervalues), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_22_itervalues_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_22_itervalues = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_22_itervalues", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_22_itervalues), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_22_itervalues, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_22_itervalues, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_22_itervalues, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_23_iteritems *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_23_iteritems[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_23_iteritems = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_23_iteritems(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_23_iteritems > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_23_iteritems)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_23_iteritems[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_23_iteritems]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_23_iteritems)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_23_iteritems(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_23_iteritems *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_23_iteritems *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_23_iteritems) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_key); Py_CLEAR(p->__pyx_v_self); Py_CLEAR(p->__pyx_t_0); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_23_iteritems < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_23_iteritems)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_23_iteritems[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_23_iteritems++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_23_iteritems *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_23_iteritems(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_23_iteritems *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_23_iteritems *)o; if (p->__pyx_v_key) { e = (*v)(p->__pyx_v_key, a); if (e) return e; } if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } if (p->__pyx_t_0) { e = (*v)(p->__pyx_t_0, a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_23_iteritems_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_23_iteritems}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_23_iteritems}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_23_iteritems}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_23_iteritems_spec = { "pysam.libcbcf.__pyx_scope_struct_23_iteritems", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_23_iteritems), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_23_iteritems_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_23_iteritems = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_23_iteritems", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_23_iteritems), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_23_iteritems, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_23_iteritems, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_23_iteritems, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_24___iter__ *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_24___iter__[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_24___iter__ = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_24___iter__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_24___iter__ > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_24___iter__)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_24___iter__[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_24___iter__]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_24___iter__)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_24___iter__(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_24___iter__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_24___iter__ *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_24___iter__) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_self); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_24___iter__ < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_24___iter__)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_24___iter__[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_24___iter__++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_24___iter__ *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_24___iter__(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_24___iter__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_24___iter__ *)o; if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_24___iter___slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_24___iter__}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_24___iter__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_24___iter__}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_24___iter___spec = { "pysam.libcbcf.__pyx_scope_struct_24___iter__", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_24___iter__), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_24___iter___slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_24___iter__ = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_24___iter__", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_24___iter__), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_24___iter__, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_24___iter__, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_24___iter__, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_25_itervalues *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_25_itervalues[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_25_itervalues = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_25_itervalues(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_25_itervalues > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_25_itervalues)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_25_itervalues[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_25_itervalues]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_25_itervalues)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_25_itervalues(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_25_itervalues *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_25_itervalues *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_25_itervalues) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_self); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_25_itervalues < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_25_itervalues)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_25_itervalues[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_25_itervalues++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_25_itervalues *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_25_itervalues(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_25_itervalues *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_25_itervalues *)o; if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_25_itervalues_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_25_itervalues}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_25_itervalues}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_25_itervalues}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_25_itervalues_spec = { "pysam.libcbcf.__pyx_scope_struct_25_itervalues", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_25_itervalues), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_25_itervalues_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_25_itervalues = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_25_itervalues", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_25_itervalues), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_25_itervalues, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_25_itervalues, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_25_itervalues, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_26_iteritems *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_26_iteritems[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_26_iteritems = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_26_iteritems(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_26_iteritems > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_26_iteritems)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_26_iteritems[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_26_iteritems]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_26_iteritems)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_26_iteritems(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_26_iteritems *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_26_iteritems *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_26_iteritems) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_self); Py_CLEAR(p->__pyx_v_value); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_26_iteritems < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_26_iteritems)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_26_iteritems[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_26_iteritems++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_26_iteritems *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_26_iteritems(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_26_iteritems *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_26_iteritems *)o; if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } if (p->__pyx_v_value) { e = (*v)(p->__pyx_v_value, a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_26_iteritems_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_26_iteritems}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_26_iteritems}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_26_iteritems}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_26_iteritems_spec = { "pysam.libcbcf.__pyx_scope_struct_26_iteritems", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_26_iteritems), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_26_iteritems_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_26_iteritems = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_26_iteritems", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_26_iteritems), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_26_iteritems, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_26_iteritems, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_26_iteritems, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_27___iter__ *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_27___iter__[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_27___iter__ = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_27___iter__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_27___iter__ > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_27___iter__)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_27___iter__[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_27___iter__]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_27___iter__)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_27___iter__(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_27___iter__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_27___iter__ *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_27___iter__) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_self); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_27___iter__ < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_27___iter__)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_27___iter__[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_27___iter__++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_27___iter__ *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_27___iter__(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_27___iter__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_27___iter__ *)o; if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_27___iter___slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_27___iter__}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_27___iter__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_27___iter__}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_27___iter___spec = { "pysam.libcbcf.__pyx_scope_struct_27___iter__", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_27___iter__), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_27___iter___slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_27___iter__ = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_27___iter__", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_27___iter__), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_27___iter__, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_27___iter__, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_27___iter__, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_28_itervalues *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_28_itervalues[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_28_itervalues = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_28_itervalues(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_28_itervalues > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_28_itervalues)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_28_itervalues[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_28_itervalues]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_28_itervalues)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_28_itervalues(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_28_itervalues *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_28_itervalues *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_28_itervalues) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_self); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_28_itervalues < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_28_itervalues)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_28_itervalues[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_28_itervalues++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_28_itervalues *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_28_itervalues(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_28_itervalues *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_28_itervalues *)o; if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_28_itervalues_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_28_itervalues}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_28_itervalues}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_28_itervalues}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_28_itervalues_spec = { "pysam.libcbcf.__pyx_scope_struct_28_itervalues", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_28_itervalues), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_28_itervalues_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_28_itervalues = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_28_itervalues", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_28_itervalues), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_28_itervalues, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_28_itervalues, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_28_itervalues, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_29_iteritems *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_29_iteritems[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_29_iteritems = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_29_iteritems(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_29_iteritems > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_29_iteritems)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_29_iteritems[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_29_iteritems]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_29_iteritems)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_29_iteritems(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_29_iteritems *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_29_iteritems *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_29_iteritems) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_self); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_29_iteritems < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_29_iteritems)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_29_iteritems[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_29_iteritems++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_29_iteritems *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_29_iteritems(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_29_iteritems *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_29_iteritems *)o; if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_29_iteritems_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_29_iteritems}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_29_iteritems}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_29_iteritems}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_29_iteritems_spec = { "pysam.libcbcf.__pyx_scope_struct_29_iteritems", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_29_iteritems), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_29_iteritems_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_29_iteritems = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_29_iteritems", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_29_iteritems), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_29_iteritems, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_29_iteritems, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_29_iteritems, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_30___set__ *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_30___set__[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_30___set__ = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_30___set__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_30___set__ > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_30___set__)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_30___set__[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_30___set__]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_30___set__)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_30___set__(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_30___set__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_30___set__ *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_30___set__) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_self); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_30___set__ < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_30___set__)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_30___set__[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_30___set__++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_30___set__ *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_30___set__(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_30___set__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_30___set__ *)o; if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } return 0; } static int __pyx_tp_clear_5pysam_7libcbcf___pyx_scope_struct_30___set__(PyObject *o) { PyObject* tmp; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_30___set__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_30___set__ *)o; tmp = ((PyObject*)p->__pyx_v_self); p->__pyx_v_self = ((struct __pyx_obj_5pysam_7libcbcf_VariantRecordSample *)Py_None); Py_INCREF(Py_None); Py_XDECREF(tmp); return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_30___set___slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_30___set__}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_30___set__}, {Py_tp_clear, (void *)__pyx_tp_clear_5pysam_7libcbcf___pyx_scope_struct_30___set__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_30___set__}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_30___set___spec = { "pysam.libcbcf.__pyx_scope_struct_30___set__", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_30___set__), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_30___set___slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_30___set__ = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_30___set__", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_30___set__), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_30___set__, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_30___set__, /*tp_traverse*/ __pyx_tp_clear_5pysam_7libcbcf___pyx_scope_struct_30___set__, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_30___set__, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_31_genexpr *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_31_genexpr[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_31_genexpr = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_31_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_31_genexpr > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_31_genexpr)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_31_genexpr[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_31_genexpr]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_31_genexpr)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_31_genexpr(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_31_genexpr *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_31_genexpr *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_31_genexpr) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_genexpr_arg_0); Py_CLEAR(p->__pyx_v_x); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_31_genexpr < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_31_genexpr)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_31_genexpr[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_31_genexpr++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_31_genexpr *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_31_genexpr(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_31_genexpr *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_31_genexpr *)o; if (p->__pyx_genexpr_arg_0) { e = (*v)(p->__pyx_genexpr_arg_0, a); if (e) return e; } if (p->__pyx_v_x) { e = (*v)(p->__pyx_v_x, a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_31_genexpr_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_31_genexpr}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_31_genexpr}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_31_genexpr}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_31_genexpr_spec = { "pysam.libcbcf.__pyx_scope_struct_31_genexpr", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_31_genexpr), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_31_genexpr_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_31_genexpr = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_31_genexpr", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_31_genexpr), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_31_genexpr, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_31_genexpr, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_31_genexpr, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_32_genexpr *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_32_genexpr[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_32_genexpr = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_32_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_32_genexpr > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_32_genexpr)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_32_genexpr[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_32_genexpr]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_32_genexpr)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_32_genexpr(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_32_genexpr *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_32_genexpr *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_32_genexpr) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_outer_scope); Py_CLEAR(p->__pyx_genexpr_arg_0); Py_CLEAR(p->__pyx_v_allele); Py_CLEAR(p->__pyx_t_0); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_32_genexpr < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_32_genexpr)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_32_genexpr[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_32_genexpr++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_32_genexpr *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_32_genexpr(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_32_genexpr *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_32_genexpr *)o; if (p->__pyx_outer_scope) { e = (*v)(((PyObject *)p->__pyx_outer_scope), a); if (e) return e; } if (p->__pyx_genexpr_arg_0) { e = (*v)(p->__pyx_genexpr_arg_0, a); if (e) return e; } if (p->__pyx_v_allele) { e = (*v)(p->__pyx_v_allele, a); if (e) return e; } if (p->__pyx_t_0) { e = (*v)(p->__pyx_t_0, a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_32_genexpr_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_32_genexpr}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_32_genexpr}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_32_genexpr}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_32_genexpr_spec = { "pysam.libcbcf.__pyx_scope_struct_32_genexpr", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_32_genexpr), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_32_genexpr_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_32_genexpr = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_32_genexpr", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_32_genexpr), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_32_genexpr, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_32_genexpr, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_32_genexpr, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_33___iter__ *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_33___iter__[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_33___iter__ = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_33___iter__(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_33___iter__ > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_33___iter__)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_33___iter__[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_33___iter__]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_33___iter__)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_33___iter__(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_33___iter__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_33___iter__ *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_33___iter__) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_self); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_33___iter__ < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_33___iter__)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_33___iter__[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_33___iter__++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_33___iter__ *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_33___iter__(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_33___iter__ *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_33___iter__ *)o; if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_33___iter___slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_33___iter__}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_33___iter__}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_33___iter__}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_33___iter___spec = { "pysam.libcbcf.__pyx_scope_struct_33___iter__", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_33___iter__), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_33___iter___slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_33___iter__ = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_33___iter__", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_33___iter__), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_33___iter__, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_33___iter__, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_33___iter__, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_34_itervalues *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_34_itervalues[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_34_itervalues = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_34_itervalues(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_34_itervalues > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_34_itervalues)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_34_itervalues[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_34_itervalues]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_34_itervalues)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_34_itervalues(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_34_itervalues *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_34_itervalues *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_34_itervalues) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_key); Py_CLEAR(p->__pyx_v_self); Py_CLEAR(p->__pyx_t_0); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_34_itervalues < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_34_itervalues)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_34_itervalues[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_34_itervalues++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_34_itervalues *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_34_itervalues(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_34_itervalues *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_34_itervalues *)o; if (p->__pyx_v_key) { e = (*v)(p->__pyx_v_key, a); if (e) return e; } if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } if (p->__pyx_t_0) { e = (*v)(p->__pyx_t_0, a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_34_itervalues_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_34_itervalues}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_34_itervalues}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_34_itervalues}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_34_itervalues_spec = { "pysam.libcbcf.__pyx_scope_struct_34_itervalues", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_34_itervalues), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_34_itervalues_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_34_itervalues = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_34_itervalues", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_34_itervalues), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_34_itervalues, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_34_itervalues, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_34_itervalues, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_35_iteritems *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_35_iteritems[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_35_iteritems = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_35_iteritems(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_35_iteritems > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_35_iteritems)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_35_iteritems[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_35_iteritems]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_35_iteritems)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_35_iteritems(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_35_iteritems *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_35_iteritems *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_35_iteritems) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_key); Py_CLEAR(p->__pyx_v_self); Py_CLEAR(p->__pyx_t_0); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_35_iteritems < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_35_iteritems)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_35_iteritems[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_35_iteritems++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_35_iteritems *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY (*Py_TYPE(o)->tp_free)(o); #else { freefunc tp_free = (freefunc)PyType_GetSlot(Py_TYPE(o), Py_tp_free); if (tp_free) tp_free(o); } #endif } } static int __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_35_iteritems(PyObject *o, visitproc v, void *a) { int e; struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_35_iteritems *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_35_iteritems *)o; if (p->__pyx_v_key) { e = (*v)(p->__pyx_v_key, a); if (e) return e; } if (p->__pyx_v_self) { e = (*v)(((PyObject *)p->__pyx_v_self), a); if (e) return e; } if (p->__pyx_t_0) { e = (*v)(p->__pyx_t_0, a); if (e) return e; } return 0; } #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_type_5pysam_7libcbcf___pyx_scope_struct_35_iteritems_slots[] = { {Py_tp_dealloc, (void *)__pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_35_iteritems}, {Py_tp_traverse, (void *)__pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_35_iteritems}, {Py_tp_new, (void *)__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_35_iteritems}, {0, 0}, }; static PyType_Spec __pyx_type_5pysam_7libcbcf___pyx_scope_struct_35_iteritems_spec = { "pysam.libcbcf.__pyx_scope_struct_35_iteritems", sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_35_iteritems), 0, Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, __pyx_type_5pysam_7libcbcf___pyx_scope_struct_35_iteritems_slots, }; #else static PyTypeObject __pyx_type_5pysam_7libcbcf___pyx_scope_struct_35_iteritems = { PyVarObject_HEAD_INIT(0, 0) "pysam.libcbcf.""__pyx_scope_struct_35_iteritems", /*tp_name*/ sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_35_iteritems), /*tp_basicsize*/ 0, /*tp_itemsize*/ __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_35_iteritems, /*tp_dealloc*/ #if PY_VERSION_HEX < 0x030800b4 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030800b4 0, /*tp_vectorcall_offset*/ #endif 0, /*tp_getattr*/ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ #endif #if PY_MAJOR_VERSION >= 3 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ 0, /*tp_as_sequence*/ 0, /*tp_as_mapping*/ 0, /*tp_hash*/ 0, /*tp_call*/ 0, /*tp_str*/ 0, /*tp_getattro*/ 0, /*tp_setattro*/ 0, /*tp_as_buffer*/ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC|Py_TPFLAGS_HAVE_FINALIZE, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_5pysam_7libcbcf___pyx_scope_struct_35_iteritems, /*tp_traverse*/ 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ 0, /*tp_iternext*/ 0, /*tp_methods*/ 0, /*tp_members*/ 0, /*tp_getset*/ 0, /*tp_base*/ 0, /*tp_dict*/ 0, /*tp_descr_get*/ 0, /*tp_descr_set*/ #if !CYTHON_USE_TYPE_SPECS 0, /*tp_dictoffset*/ #endif 0, /*tp_init*/ 0, /*tp_alloc*/ __pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_35_iteritems, /*tp_new*/ 0, /*tp_free*/ 0, /*tp_is_gc*/ 0, /*tp_bases*/ 0, /*tp_mro*/ 0, /*tp_cache*/ 0, /*tp_subclasses*/ 0, /*tp_weaklist*/ 0, /*tp_del*/ 0, /*tp_version_tag*/ #if PY_VERSION_HEX >= 0x030400a1 #if CYTHON_USE_TP_FINALIZE 0, /*tp_finalize*/ #else NULL, /*tp_finalize*/ #endif #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, /*tp_vectorcall*/ #endif #if __PYX_NEED_TP_PRINT_SLOT == 1 0, /*tp_print*/ #endif #if PY_VERSION_HEX >= 0x030C0000 0, /*tp_watched*/ #endif #if PY_VERSION_HEX >= 0x030d00A4 0, /*tp_versions_used*/ #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, /*tp_pypy_flags*/ #endif }; #endif #if CYTHON_USE_FREELISTS static struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_36_itervalues *__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_36_itervalues[8]; static int __pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_36_itervalues = 0; #endif static PyObject *__pyx_tp_new_5pysam_7libcbcf___pyx_scope_struct_36_itervalues(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { PyObject *o; #if CYTHON_COMPILING_IN_LIMITED_API allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc); o = alloc_func(t, 0); #else #if CYTHON_USE_FREELISTS if (likely((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_36_itervalues > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_36_itervalues)))) { o = (PyObject*)__pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_36_itervalues[--__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_36_itervalues]; memset(o, 0, sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_36_itervalues)); (void) PyObject_INIT(o, t); PyObject_GC_Track(o); } else #endif { o = (*t->tp_alloc)(t, 0); if (unlikely(!o)) return 0; } #endif return o; } static void __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_36_itervalues(PyObject *o) { struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_36_itervalues *p = (struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_36_itervalues *)o; #if CYTHON_USE_TP_FINALIZE if (unlikely((PY_VERSION_HEX >= 0x03080000 || __Pyx_PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE)) && __Pyx_PyObject_GetSlot(o, tp_finalize, destructor)) && !__Pyx_PyObject_GC_IsFinalized(o)) { if (__Pyx_PyObject_GetSlot(o, tp_dealloc, destructor) == __pyx_tp_dealloc_5pysam_7libcbcf___pyx_scope_struct_36_itervalues) { if (PyObject_CallFinalizerFromDealloc(o)) return; } } #endif PyObject_GC_UnTrack(o); Py_CLEAR(p->__pyx_v_key); Py_CLEAR(p->__pyx_v_self); Py_CLEAR(p->__pyx_t_0); #if CYTHON_USE_FREELISTS if (((int)(__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_36_itervalues < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_36_itervalues)))) { __pyx_freelist_5pysam_7libcbcf___pyx_scope_struct_36_itervalues[__pyx_freecount_5pysam_7libcbcf___pyx_scope_struct_36_itervalues++] = ((struct __pyx_obj_5pysam_7libcbcf___pyx_scope_struct_36_itervalues *)o); } else #endif { #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY 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Not clear what to do. */ __pyx_tuple__3 = PyTuple_Pack(1, __pyx_kp_u_unsupported_info_type_code); if (unlikely(!__pyx_tuple__3)) __PYX_ERR(0, 330, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__3); __Pyx_GIVEREF(__pyx_tuple__3); /* "pysam/libcbcf.pyx":339 * value = () * else: * value = (None,)*count # <<<<<<<<<<<<<< * elif scalar and len(value) == 1: * value = value[0] */ __pyx_tuple__4 = PyTuple_New(1); if (unlikely(!__pyx_tuple__4)) __PYX_ERR(0, 339, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__4); __Pyx_INCREF(Py_None); __Pyx_GIVEREF(Py_None); if (__Pyx_PyTuple_SET_ITEM(__pyx_tuple__4, 0, Py_None)) __PYX_ERR(0, 339, __pyx_L1_error); __Pyx_GIVEREF(__pyx_tuple__4); /* "pysam/libcbcf.pyx":399 * bcf_float_set(dataf + i, bcf_float_vector_end) * else: * raise TypeError('unsupported type') # <<<<<<<<<<<<<< * * */ __pyx_tuple__5 = PyTuple_Pack(1, __pyx_kp_u_unsupported_type); if (unlikely(!__pyx_tuple__5)) __PYX_ERR(0, 399, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__5); __Pyx_GIVEREF(__pyx_tuple__5); 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__Pyx_GIVEREF(__pyx_tuple__14); /* "pysam/libcbcf.pyx":612 * for v in values: * if not(v is None or bcf_int32_missing < v <= INT32_MAX): * raise ValueError('Integer value too small/large to store in VCF/BCF') # <<<<<<<<<<<<<< * elif ht_type == BCF_HT_STR: * values = b','.join(force_bytes(v) if v is not None else b'' for v in values) */ __pyx_tuple__15 = PyTuple_Pack(1, __pyx_kp_u_Integer_value_too_small_large_to); if (unlikely(!__pyx_tuple__15)) __PYX_ERR(0, 612, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__15); __Pyx_GIVEREF(__pyx_tuple__15); /* "pysam/libcbcf.pyx":617 * elif ht_type == BCF_HT_FLAG: * if values[0] not in (True, False, None, 1, 0): * raise ValueError('Flag values must be: True, False, None, 1, 0') # <<<<<<<<<<<<<< * else: * raise TypeError('unsupported type') */ __pyx_tuple__16 = PyTuple_Pack(1, __pyx_kp_u_Flag_values_must_be_True_False_N); if (unlikely(!__pyx_tuple__16)) __PYX_ERR(0, 617, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__16); __Pyx_GIVEREF(__pyx_tuple__16); /* "pysam/libcbcf.pyx":667 * break * else: * raise ValueError('Unknown allele') # <<<<<<<<<<<<<< * else: * i = value */ __pyx_tuple__17 = PyTuple_Pack(1, __pyx_kp_u_Unknown_allele); 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if (unlikely(!__pyx_tuple__169)) __PYX_ERR(0, 3130, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__169); __Pyx_GIVEREF(__pyx_tuple__169); /* "pysam/libcbcf.pyx":3175 * # return bcf_str_cache_get_charptr(r.d.id) if r.d.id != b'.' else None * if (r.d.m_id == 0): * raise ValueError('Error extracting ID') # <<<<<<<<<<<<<< * return charptr_to_str(r.d.id) if r.d.id != b'.' else None * */ __pyx_tuple__170 = PyTuple_Pack(1, __pyx_kp_u_Error_extracting_ID); if (unlikely(!__pyx_tuple__170)) __PYX_ERR(0, 3175, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__170); __Pyx_GIVEREF(__pyx_tuple__170); /* "pysam/libcbcf.pyx":3188 * idstr = bid * if bcf_update_id(self.header.ptr, self.ptr, idstr) < 0: * raise ValueError('Error updating id') # <<<<<<<<<<<<<< * * @property */ __pyx_tuple__171 = PyTuple_Pack(1, __pyx_kp_u_Error_updating_id); if (unlikely(!__pyx_tuple__171)) __PYX_ERR(0, 3188, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__171); __Pyx_GIVEREF(__pyx_tuple__171); /* "pysam/libcbcf.pyx":3205 * #FIXME: Set alleles directly -- this is stupid * if not value: * raise ValueError('ref allele must not be null') # <<<<<<<<<<<<<< * value = force_bytes(value) * if r.d.allele and r.n_allele: */ __pyx_tuple__172 = PyTuple_Pack(1, __pyx_kp_u_ref_allele_must_not_be_null); if (unlikely(!__pyx_tuple__172)) __PYX_ERR(0, 3205, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__172); __Pyx_GIVEREF(__pyx_tuple__172); /* "pysam/libcbcf.pyx":3243 * * if len(values) < 2: * raise ValueError('must set at least 2 alleles') # <<<<<<<<<<<<<< * * if b'' in values: */ __pyx_tuple__173 = PyTuple_Pack(1, __pyx_kp_u_must_set_at_least_2_alleles); if (unlikely(!__pyx_tuple__173)) __PYX_ERR(0, 3243, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__173); __Pyx_GIVEREF(__pyx_tuple__173); /* "pysam/libcbcf.pyx":3246 * * if b'' in values: * raise ValueError('cannot set null allele') # <<<<<<<<<<<<<< * * value = b','.join(values) */ __pyx_tuple__174 = PyTuple_Pack(1, __pyx_kp_u_cannot_set_null_allele); if (unlikely(!__pyx_tuple__174)) __PYX_ERR(0, 3246, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__174); __Pyx_GIVEREF(__pyx_tuple__174); /* "pysam/libcbcf.pyx":3251 * * if bcf_update_alleles_str(self.header.ptr, r, value) < 0: * raise ValueError('Error updating alleles') # <<<<<<<<<<<<<< * * # Reset rlen if alternate allele isn't symbolic, otherwise used cached */ __pyx_tuple__175 = PyTuple_Pack(1, __pyx_kp_u_Error_updating_alleles); if (unlikely(!__pyx_tuple__175)) __PYX_ERR(0, 3251, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__175); __Pyx_GIVEREF(__pyx_tuple__175); /* "pysam/libcbcf.pyx":3284 * value = [force_bytes(v) for v in value] * if b'' in value: * raise ValueError('cannot set null alt allele') # <<<<<<<<<<<<<< * ref = [r.d.allele[0] if r.d.allele and r.n_allele else b'.'] * self.alleles = ref + value */ __pyx_tuple__176 = PyTuple_Pack(1, __pyx_kp_u_cannot_set_null_alt_allele); if (unlikely(!__pyx_tuple__176)) __PYX_ERR(0, 3284, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__176); __Pyx_GIVEREF(__pyx_tuple__176); /* "pysam/libcbcf.pyx":3381 * if line.m: * free(line.s) * raise ValueError('vcf_format failed') # <<<<<<<<<<<<<< * * # Strip CR/LF? */ __pyx_tuple__177 = PyTuple_Pack(1, __pyx_kp_u_vcf_format_failed); if (unlikely(!__pyx_tuple__177)) __PYX_ERR(0, 3381, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__177); __Pyx_GIVEREF(__pyx_tuple__177); /* "pysam/libcbcf.pyx":3403 * * if not r: * raise ValueError('cannot create VariantRecord') # <<<<<<<<<<<<<< * * if r.errcode: */ __pyx_tuple__180 = PyTuple_Pack(1, __pyx_kp_u_cannot_create_VariantRecord); if (unlikely(!__pyx_tuple__180)) __PYX_ERR(0, 3403, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__180); __Pyx_GIVEREF(__pyx_tuple__180); /* "pysam/libcbcf.pyx":3488 * * if any((type(x) == int for x in value)): * raise ValueError('Use .allele_indices to set integer allele indices') # <<<<<<<<<<<<<< * * # determine and set allele indices: */ __pyx_tuple__182 = PyTuple_Pack(1, __pyx_kp_u_Use_allele_indices_to_set_intege); if (unlikely(!__pyx_tuple__182)) __PYX_ERR(0, 3488, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__182); __Pyx_GIVEREF(__pyx_tuple__182); /* "pysam/libcbcf.pyx":3494 * self['GT'] = tuple( (self.record.alleles.index(allele) for allele in value) ) * except ValueError: * raise ValueError("One or more of the supplied sample alleles are not defined as alleles of the corresponding pysam.libcbcf.VariantRecord." # <<<<<<<<<<<<<< * "First set the .alleles of this record to define the alleles") * */ __pyx_tuple__183 = PyTuple_Pack(1, __pyx_kp_u_One_or_more_of_the_supplied_samp); if (unlikely(!__pyx_tuple__183)) __PYX_ERR(0, 3494, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__183); 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This approach is */ __pyx_tuple__236 = PyTuple_Pack(1, __pyx_kp_u_Cannot_re_open_htsfile); if (unlikely(!__pyx_tuple__236)) __PYX_ERR(0, 4208, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__236); __Pyx_GIVEREF(__pyx_tuple__236); /* "pysam/libcbcf.pyx":4261 * # to bgzf_read (https://github.com/samtools/htslib/blob/1.7/bgzf.c#L888) * # Better to avoid this (for now) than to produce seemingly correct results. * raise ValueError('Cannot add extra threads when "ignore_truncation" is True') # <<<<<<<<<<<<<< * self.threads = threads * */ __pyx_tuple__238 = PyTuple_Pack(1, __pyx_kp_u_Cannot_add_extra_threads_when_ig); if (unlikely(!__pyx_tuple__238)) __PYX_ERR(0, 4261, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__238); __Pyx_GIVEREF(__pyx_tuple__238); /* "pysam/libcbcf.pyx":4269 * * if not mode or mode[0] not in 'rwa': * raise ValueError('mode must begin with r, w or a') # <<<<<<<<<<<<<< * * self.duplicate_filehandle = duplicate_filehandle */ __pyx_tuple__239 = PyTuple_Pack(1, __pyx_kp_u_mode_must_begin_with_r_w_or_a); 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if (unlikely(!__pyx_codeobj__149)) __PYX_ERR(4, 16, __pyx_L1_error) /* "pysam/libcbcf.pyx":2907 * yield charptr_to_str(hdr.samples[i]) * * def get(self, key, default=None): # <<<<<<<<<<<<<< * """D.get(k[,d]) -> D[k] if k in D, else d. d defaults to None.""" * try: */ __pyx_codeobj__150 = (PyObject*)__Pyx_PyCode_New(3, 0, 0, 3, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__282, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libcbcf_pyx, __pyx_n_s_get, 2907, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__150)) __PYX_ERR(0, 2907, __pyx_L1_error) /* "pysam/libcbcf.pyx":2932 * return 0 <= sample_index < n * * def iterkeys(self): # <<<<<<<<<<<<<< * """D.iterkeys() -> an iterator over the keys of D""" * return iter(self) */ __pyx_codeobj__151 = (PyObject*)__Pyx_PyCode_New(1, 0, 0, 1, 0, CO_OPTIMIZED|CO_NEWLOCALS, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__283, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_pysam_libcbcf_pyx, __pyx_n_s_iterkeys, 2932, __pyx_empty_bytes); 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#else exc_type = tstate->curexc_type; if (exc_type == err) return 1; if (unlikely(!exc_type)) return 0; #endif #if CYTHON_AVOID_BORROWED_REFS Py_INCREF(exc_type); #endif if (unlikely(PyTuple_Check(err))) { result = __Pyx_PyErr_ExceptionMatchesTuple(exc_type, err); } else { result = __Pyx_PyErr_GivenExceptionMatches(exc_type, err); } #if CYTHON_AVOID_BORROWED_REFS Py_DECREF(exc_type); #endif return result; } #endif /* PyErrFetchRestore */ #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { #if PY_VERSION_HEX >= 0x030C00A6 PyObject *tmp_value; assert(type == NULL || (value != NULL && type == (PyObject*) Py_TYPE(value))); if (value) { #if CYTHON_COMPILING_IN_CPYTHON if (unlikely(((PyBaseExceptionObject*) value)->traceback != tb)) #endif PyException_SetTraceback(value, tb); } tmp_value = tstate->current_exception; tstate->current_exception = value; Py_XDECREF(tmp_value); Py_XDECREF(type); Py_XDECREF(tb); #else PyObject *tmp_type, *tmp_value, *tmp_tb; tmp_type = tstate->curexc_type; tmp_value = tstate->curexc_value; tmp_tb = tstate->curexc_traceback; tstate->curexc_type = type; tstate->curexc_value = value; tstate->curexc_traceback = tb; Py_XDECREF(tmp_type); Py_XDECREF(tmp_value); Py_XDECREF(tmp_tb); #endif } static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { #if PY_VERSION_HEX >= 0x030C00A6 PyObject* exc_value; exc_value = tstate->current_exception; tstate->current_exception = 0; *value = exc_value; *type = NULL; *tb = NULL; if (exc_value) { *type = (PyObject*) Py_TYPE(exc_value); Py_INCREF(*type); #if CYTHON_COMPILING_IN_CPYTHON *tb = ((PyBaseExceptionObject*) exc_value)->traceback; Py_XINCREF(*tb); #else *tb = PyException_GetTraceback(exc_value); #endif } #else *type = tstate->curexc_type; *value = tstate->curexc_value; *tb = tstate->curexc_traceback; tstate->curexc_type = 0; tstate->curexc_value = 0; tstate->curexc_traceback = 0; #endif } #endif /* PyObjectGetAttrStr */ #if CYTHON_USE_TYPE_SLOTS static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) { PyTypeObject* tp = Py_TYPE(obj); if (likely(tp->tp_getattro)) return tp->tp_getattro(obj, attr_name); #if PY_MAJOR_VERSION < 3 if (likely(tp->tp_getattr)) return tp->tp_getattr(obj, PyString_AS_STRING(attr_name)); #endif return PyObject_GetAttr(obj, attr_name); } #endif /* PyObjectGetAttrStrNoError */ #if __PYX_LIMITED_VERSION_HEX < 0x030d00A1 static void __Pyx_PyObject_GetAttrStr_ClearAttributeError(void) { __Pyx_PyThreadState_declare __Pyx_PyThreadState_assign if (likely(__Pyx_PyErr_ExceptionMatches(PyExc_AttributeError))) __Pyx_PyErr_Clear(); } #endif static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name) { PyObject *result; #if __PYX_LIMITED_VERSION_HEX >= 0x030d00A1 (void) PyObject_GetOptionalAttr(obj, attr_name, &result); return result; #else #if CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_TYPE_SLOTS && PY_VERSION_HEX >= 0x030700B1 PyTypeObject* tp = Py_TYPE(obj); if (likely(tp->tp_getattro == PyObject_GenericGetAttr)) { return _PyObject_GenericGetAttrWithDict(obj, attr_name, NULL, 1); } #endif result = __Pyx_PyObject_GetAttrStr(obj, attr_name); if (unlikely(!result)) { __Pyx_PyObject_GetAttrStr_ClearAttributeError(); } return result; #endif } /* GetBuiltinName */ static PyObject *__Pyx_GetBuiltinName(PyObject *name) { PyObject* result = __Pyx_PyObject_GetAttrStrNoError(__pyx_b, name); if (unlikely(!result) && !PyErr_Occurred()) { PyErr_Format(PyExc_NameError, #if PY_MAJOR_VERSION >= 3 "name '%U' is not defined", name); #else "name '%.200s' is not defined", PyString_AS_STRING(name)); #endif } return result; } /* TupleAndListFromArray */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE void __Pyx_copy_object_array(PyObject *const *CYTHON_RESTRICT src, PyObject** CYTHON_RESTRICT dest, Py_ssize_t length) { PyObject *v; Py_ssize_t i; for (i = 0; i < length; i++) { v = dest[i] = src[i]; Py_INCREF(v); } } static CYTHON_INLINE PyObject * __Pyx_PyTuple_FromArray(PyObject *const *src, Py_ssize_t n) { PyObject *res; if (n <= 0) { Py_INCREF(__pyx_empty_tuple); return __pyx_empty_tuple; } res = PyTuple_New(n); if (unlikely(res == NULL)) return NULL; __Pyx_copy_object_array(src, ((PyTupleObject*)res)->ob_item, n); return res; } static CYTHON_INLINE PyObject * __Pyx_PyList_FromArray(PyObject *const *src, Py_ssize_t n) { PyObject *res; if (n <= 0) { return PyList_New(0); } res = PyList_New(n); if (unlikely(res == NULL)) return NULL; __Pyx_copy_object_array(src, ((PyListObject*)res)->ob_item, n); return res; } #endif /* BytesEquals */ static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) { #if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API return PyObject_RichCompareBool(s1, s2, equals); #else if (s1 == s2) { return (equals == Py_EQ); } else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) { const char *ps1, *ps2; Py_ssize_t length = PyBytes_GET_SIZE(s1); if (length != PyBytes_GET_SIZE(s2)) return (equals == Py_NE); ps1 = PyBytes_AS_STRING(s1); ps2 = PyBytes_AS_STRING(s2); if (ps1[0] != ps2[0]) { return (equals == Py_NE); } else if (length == 1) { return (equals == Py_EQ); } else { int result; #if CYTHON_USE_UNICODE_INTERNALS && (PY_VERSION_HEX < 0x030B0000) Py_hash_t hash1, hash2; hash1 = ((PyBytesObject*)s1)->ob_shash; hash2 = ((PyBytesObject*)s2)->ob_shash; if (hash1 != hash2 && hash1 != -1 && hash2 != -1) { return (equals == Py_NE); } #endif result = memcmp(ps1, ps2, (size_t)length); return (equals == Py_EQ) ? (result == 0) : (result != 0); } } else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) { return (equals == Py_NE); } else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) { return (equals == Py_NE); } else { int result; PyObject* py_result = PyObject_RichCompare(s1, s2, equals); if (!py_result) return -1; result = __Pyx_PyObject_IsTrue(py_result); Py_DECREF(py_result); return result; } #endif } /* UnicodeEquals */ static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) { #if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API return PyObject_RichCompareBool(s1, s2, equals); #else #if PY_MAJOR_VERSION < 3 PyObject* owned_ref = NULL; #endif int s1_is_unicode, s2_is_unicode; if (s1 == s2) { goto return_eq; } s1_is_unicode = PyUnicode_CheckExact(s1); s2_is_unicode = PyUnicode_CheckExact(s2); #if PY_MAJOR_VERSION < 3 if ((s1_is_unicode & (!s2_is_unicode)) && PyString_CheckExact(s2)) { owned_ref = PyUnicode_FromObject(s2); if (unlikely(!owned_ref)) return -1; s2 = owned_ref; s2_is_unicode = 1; } else if ((s2_is_unicode & (!s1_is_unicode)) && PyString_CheckExact(s1)) { owned_ref = PyUnicode_FromObject(s1); if (unlikely(!owned_ref)) return -1; s1 = owned_ref; s1_is_unicode = 1; } else if (((!s2_is_unicode) & (!s1_is_unicode))) { return __Pyx_PyBytes_Equals(s1, s2, equals); } #endif if (s1_is_unicode & s2_is_unicode) { Py_ssize_t length; int kind; void *data1, *data2; if (unlikely(__Pyx_PyUnicode_READY(s1) < 0) || unlikely(__Pyx_PyUnicode_READY(s2) < 0)) return -1; length = __Pyx_PyUnicode_GET_LENGTH(s1); if (length != __Pyx_PyUnicode_GET_LENGTH(s2)) { goto return_ne; } #if CYTHON_USE_UNICODE_INTERNALS { Py_hash_t hash1, hash2; #if CYTHON_PEP393_ENABLED hash1 = ((PyASCIIObject*)s1)->hash; hash2 = ((PyASCIIObject*)s2)->hash; #else hash1 = ((PyUnicodeObject*)s1)->hash; hash2 = ((PyUnicodeObject*)s2)->hash; #endif if (hash1 != hash2 && hash1 != -1 && hash2 != -1) { goto return_ne; } } #endif kind = __Pyx_PyUnicode_KIND(s1); if (kind != __Pyx_PyUnicode_KIND(s2)) { goto return_ne; } data1 = __Pyx_PyUnicode_DATA(s1); data2 = __Pyx_PyUnicode_DATA(s2); if (__Pyx_PyUnicode_READ(kind, data1, 0) != __Pyx_PyUnicode_READ(kind, data2, 0)) { goto return_ne; } else if (length == 1) { goto return_eq; } else { int result = memcmp(data1, data2, (size_t)(length * kind)); #if PY_MAJOR_VERSION < 3 Py_XDECREF(owned_ref); #endif return (equals == Py_EQ) ? (result == 0) : (result != 0); } } else if ((s1 == Py_None) & s2_is_unicode) { goto return_ne; } else if ((s2 == Py_None) & s1_is_unicode) { goto return_ne; } else { int result; PyObject* py_result = PyObject_RichCompare(s1, s2, equals); #if PY_MAJOR_VERSION < 3 Py_XDECREF(owned_ref); #endif if (!py_result) return -1; result = __Pyx_PyObject_IsTrue(py_result); Py_DECREF(py_result); return result; } return_eq: #if PY_MAJOR_VERSION < 3 Py_XDECREF(owned_ref); #endif return (equals == Py_EQ); return_ne: #if PY_MAJOR_VERSION < 3 Py_XDECREF(owned_ref); #endif return (equals == Py_NE); #endif } /* fastcall */ #if CYTHON_METH_FASTCALL static CYTHON_INLINE PyObject * __Pyx_GetKwValue_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues, PyObject *s) { Py_ssize_t i, n = PyTuple_GET_SIZE(kwnames); for (i = 0; i < n; i++) { if (s == PyTuple_GET_ITEM(kwnames, i)) return kwvalues[i]; } for (i = 0; i < n; i++) { int eq = __Pyx_PyUnicode_Equals(s, PyTuple_GET_ITEM(kwnames, i), Py_EQ); if (unlikely(eq != 0)) { if (unlikely(eq < 0)) return NULL; return kwvalues[i]; } } return NULL; } #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000 CYTHON_UNUSED static PyObject *__Pyx_KwargsAsDict_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues) { Py_ssize_t i, nkwargs = PyTuple_GET_SIZE(kwnames); PyObject *dict; dict = PyDict_New(); if (unlikely(!dict)) return NULL; for (i=0; i<nkwargs; i++) { PyObject *key = PyTuple_GET_ITEM(kwnames, i); if (unlikely(PyDict_SetItem(dict, key, kwvalues[i]) < 0)) goto bad; } return dict; bad: Py_DECREF(dict); return NULL; } #endif #endif /* Profile */ #if CYTHON_PROFILE static int __Pyx_TraceSetupAndCall(PyCodeObject** code, PyFrameObject** frame, PyThreadState* tstate, const char *funcname, const char *srcfile, int firstlineno) { PyObject *type, *value, *traceback; int retval; if (*frame == NULL || !CYTHON_PROFILE_REUSE_FRAME) { if (*code == NULL) { *code = __Pyx_createFrameCodeObject(funcname, srcfile, firstlineno); if (*code == NULL) return 0; } *frame = PyFrame_New( tstate, /*PyThreadState *tstate*/ *code, /*PyCodeObject *code*/ __pyx_d, /*PyObject *globals*/ 0 /*PyObject *locals*/ ); if (*frame == NULL) return 0; if (CYTHON_TRACE && (*frame)->f_trace == NULL) { Py_INCREF(Py_None); (*frame)->f_trace = Py_None; } #if PY_VERSION_HEX < 0x030400B1 } else { (*frame)->f_tstate = tstate; #endif } __Pyx_PyFrame_SetLineNumber(*frame, firstlineno); retval = 1; __Pyx_EnterTracing(tstate); __Pyx_ErrFetchInState(tstate, &type, &value, &traceback); #if CYTHON_TRACE if (tstate->c_tracefunc) retval = tstate->c_tracefunc(tstate->c_traceobj, *frame, PyTrace_CALL, NULL) == 0; if (retval && tstate->c_profilefunc) #endif retval = tstate->c_profilefunc(tstate->c_profileobj, *frame, PyTrace_CALL, NULL) == 0; __Pyx_LeaveTracing(tstate); if (retval) { __Pyx_ErrRestoreInState(tstate, type, value, traceback); return __Pyx_IsTracing(tstate, 0, 0) && retval; } else { Py_XDECREF(type); Py_XDECREF(value); Py_XDECREF(traceback); return -1; } } static PyCodeObject *__Pyx_createFrameCodeObject(const char *funcname, const char *srcfile, int firstlineno) { PyCodeObject *py_code = 0; #if PY_MAJOR_VERSION >= 3 py_code = PyCode_NewEmpty(srcfile, funcname, firstlineno); if (likely(py_code)) { py_code->co_flags |= CO_OPTIMIZED | CO_NEWLOCALS; } #else PyObject *py_srcfile = 0; PyObject *py_funcname = 0; py_funcname = PyString_FromString(funcname); if (unlikely(!py_funcname)) goto bad; py_srcfile = PyString_FromString(srcfile); if (unlikely(!py_srcfile)) goto bad; py_code = PyCode_New( 0, 0, 0, CO_OPTIMIZED | CO_NEWLOCALS, __pyx_empty_bytes, /*PyObject *code,*/ __pyx_empty_tuple, /*PyObject *consts,*/ __pyx_empty_tuple, /*PyObject *names,*/ __pyx_empty_tuple, /*PyObject *varnames,*/ __pyx_empty_tuple, /*PyObject *freevars,*/ __pyx_empty_tuple, /*PyObject *cellvars,*/ py_srcfile, /*PyObject *filename,*/ py_funcname, /*PyObject *name,*/ firstlineno, __pyx_empty_bytes /*PyObject *lnotab*/ ); bad: Py_XDECREF(py_srcfile); Py_XDECREF(py_funcname); #endif return py_code; } #endif /* DivInt[long] */ static CYTHON_INLINE long __Pyx_div_long(long a, long b) { long q = a / b; long r = a - q*b; q -= ((r != 0) & ((r ^ b) < 0)); return q; } /* PyObjectCall */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) { PyObject *result; ternaryfunc call = Py_TYPE(func)->tp_call; if (unlikely(!call)) return PyObject_Call(func, arg, kw); #if PY_MAJOR_VERSION < 3 if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) return NULL; #else if (unlikely(Py_EnterRecursiveCall(" while calling a Python object"))) return NULL; #endif result = (*call)(func, arg, kw); Py_LeaveRecursiveCall(); if (unlikely(!result) && unlikely(!PyErr_Occurred())) { PyErr_SetString( PyExc_SystemError, "NULL result without error in PyObject_Call"); } return result; } #endif /* PyIntBinop */ #if !CYTHON_COMPILING_IN_PYPY static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check) { CYTHON_MAYBE_UNUSED_VAR(intval); CYTHON_MAYBE_UNUSED_VAR(inplace); CYTHON_UNUSED_VAR(zerodivision_check); #if PY_MAJOR_VERSION < 3 if (likely(PyInt_CheckExact(op1))) { const long b = intval; long x; long a = PyInt_AS_LONG(op1); x = (long)((unsigned long)a + (unsigned long)b); if (likely((x^a) >= 0 || (x^b) >= 0)) return PyInt_FromLong(x); return PyLong_Type.tp_as_number->nb_add(op1, op2); } #endif #if CYTHON_USE_PYLONG_INTERNALS if (likely(PyLong_CheckExact(op1))) { const long b = intval; long a, x; #ifdef HAVE_LONG_LONG const PY_LONG_LONG llb = intval; PY_LONG_LONG lla, llx; #endif if (unlikely(__Pyx_PyLong_IsZero(op1))) { return __Pyx_NewRef(op2); } if (likely(__Pyx_PyLong_IsCompact(op1))) { a = __Pyx_PyLong_CompactValue(op1); } else { const digit* digits = __Pyx_PyLong_Digits(op1); const Py_ssize_t size = __Pyx_PyLong_SignedDigitCount(op1); switch (size) { case -2: if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); break; #ifdef HAVE_LONG_LONG } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); goto long_long; #endif } CYTHON_FALLTHROUGH; case 2: if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); break; #ifdef HAVE_LONG_LONG } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); goto long_long; #endif } CYTHON_FALLTHROUGH; case -3: if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); break; #ifdef HAVE_LONG_LONG } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); goto long_long; #endif } CYTHON_FALLTHROUGH; case 3: if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); break; #ifdef HAVE_LONG_LONG } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); goto long_long; #endif } CYTHON_FALLTHROUGH; case -4: if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); break; #ifdef HAVE_LONG_LONG } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); goto long_long; #endif } CYTHON_FALLTHROUGH; case 4: if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); break; #ifdef HAVE_LONG_LONG } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); goto long_long; #endif } CYTHON_FALLTHROUGH; default: return PyLong_Type.tp_as_number->nb_add(op1, op2); } } x = a + b; return PyLong_FromLong(x); #ifdef HAVE_LONG_LONG long_long: llx = lla + llb; return PyLong_FromLongLong(llx); #endif } #endif if (PyFloat_CheckExact(op1)) { const long b = intval; #if CYTHON_COMPILING_IN_LIMITED_API double a = __pyx_PyFloat_AsDouble(op1); #else double a = PyFloat_AS_DOUBLE(op1); #endif double result; PyFPE_START_PROTECT("add", return NULL) result = ((double)a) + (double)b; PyFPE_END_PROTECT(result) return PyFloat_FromDouble(result); } return (inplace ? PyNumber_InPlaceAdd : PyNumber_Add)(op1, op2); } #endif /* RaiseException */ #if PY_MAJOR_VERSION < 3 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { __Pyx_PyThreadState_declare CYTHON_UNUSED_VAR(cause); Py_XINCREF(type); if (!value || value == Py_None) value = NULL; else Py_INCREF(value); if (!tb || tb == Py_None) tb = NULL; else { Py_INCREF(tb); if (!PyTraceBack_Check(tb)) { PyErr_SetString(PyExc_TypeError, "raise: arg 3 must be a traceback or None"); goto raise_error; } } if (PyType_Check(type)) { #if CYTHON_COMPILING_IN_PYPY if (!value) { Py_INCREF(Py_None); value = Py_None; } #endif PyErr_NormalizeException(&type, &value, &tb); } else { if (value) { PyErr_SetString(PyExc_TypeError, "instance exception may not have a separate value"); goto raise_error; } value = type; type = (PyObject*) Py_TYPE(type); Py_INCREF(type); if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) { PyErr_SetString(PyExc_TypeError, "raise: exception class must be a subclass of BaseException"); goto raise_error; } } __Pyx_PyThreadState_assign __Pyx_ErrRestore(type, value, tb); return; raise_error: Py_XDECREF(value); Py_XDECREF(type); Py_XDECREF(tb); return; } #else static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) { PyObject* owned_instance = NULL; if (tb == Py_None) { tb = 0; } else if (tb && !PyTraceBack_Check(tb)) { PyErr_SetString(PyExc_TypeError, "raise: arg 3 must be a traceback or None"); goto bad; } if (value == Py_None) value = 0; if (PyExceptionInstance_Check(type)) { if (value) { PyErr_SetString(PyExc_TypeError, "instance exception may not have a separate value"); goto bad; } value = type; type = (PyObject*) Py_TYPE(value); } else if (PyExceptionClass_Check(type)) { PyObject *instance_class = NULL; if (value && PyExceptionInstance_Check(value)) { instance_class = (PyObject*) Py_TYPE(value); if (instance_class != type) { int is_subclass = PyObject_IsSubclass(instance_class, type); if (!is_subclass) { instance_class = NULL; } else if (unlikely(is_subclass == -1)) { goto bad; } else { type = instance_class; } } } if (!instance_class) { PyObject *args; if (!value) args = PyTuple_New(0); else if (PyTuple_Check(value)) { Py_INCREF(value); args = value; } else args = PyTuple_Pack(1, value); if (!args) goto bad; owned_instance = PyObject_Call(type, args, NULL); Py_DECREF(args); if (!owned_instance) goto bad; value = owned_instance; if (!PyExceptionInstance_Check(value)) { PyErr_Format(PyExc_TypeError, "calling %R should have returned an instance of " "BaseException, not %R", type, Py_TYPE(value)); goto bad; } } } else { PyErr_SetString(PyExc_TypeError, "raise: exception class must be a subclass of BaseException"); goto bad; } if (cause) { PyObject *fixed_cause; if (cause == Py_None) { fixed_cause = NULL; } else if (PyExceptionClass_Check(cause)) { fixed_cause = PyObject_CallObject(cause, NULL); if (fixed_cause == NULL) goto bad; } else if (PyExceptionInstance_Check(cause)) { fixed_cause = cause; Py_INCREF(fixed_cause); } else { PyErr_SetString(PyExc_TypeError, "exception causes must derive from " "BaseException"); goto bad; } PyException_SetCause(value, fixed_cause); } PyErr_SetObject(type, value); if (tb) { #if PY_VERSION_HEX >= 0x030C00A6 PyException_SetTraceback(value, tb); #elif CYTHON_FAST_THREAD_STATE PyThreadState *tstate = __Pyx_PyThreadState_Current; PyObject* tmp_tb = tstate->curexc_traceback; if (tb != tmp_tb) { Py_INCREF(tb); tstate->curexc_traceback = tb; Py_XDECREF(tmp_tb); } #else PyObject *tmp_type, *tmp_value, *tmp_tb; PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb); Py_INCREF(tb); PyErr_Restore(tmp_type, tmp_value, tb); Py_XDECREF(tmp_tb); #endif } bad: Py_XDECREF(owned_instance); return; } #endif /* GetException */ #if CYTHON_FAST_THREAD_STATE static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) #else static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) #endif { PyObject *local_type = NULL, *local_value, *local_tb = NULL; #if CYTHON_FAST_THREAD_STATE PyObject *tmp_type, *tmp_value, *tmp_tb; #if PY_VERSION_HEX >= 0x030C00A6 local_value = tstate->current_exception; tstate->current_exception = 0; if (likely(local_value)) { local_type = (PyObject*) Py_TYPE(local_value); Py_INCREF(local_type); local_tb = PyException_GetTraceback(local_value); } #else local_type = tstate->curexc_type; local_value = tstate->curexc_value; local_tb = tstate->curexc_traceback; tstate->curexc_type = 0; tstate->curexc_value = 0; tstate->curexc_traceback = 0; #endif #else PyErr_Fetch(&local_type, &local_value, &local_tb); #endif PyErr_NormalizeException(&local_type, &local_value, &local_tb); #if CYTHON_FAST_THREAD_STATE && PY_VERSION_HEX >= 0x030C00A6 if (unlikely(tstate->current_exception)) #elif CYTHON_FAST_THREAD_STATE if (unlikely(tstate->curexc_type)) #else if (unlikely(PyErr_Occurred())) #endif goto bad; #if PY_MAJOR_VERSION >= 3 if (local_tb) { if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0)) goto bad; } #endif Py_XINCREF(local_tb); Py_XINCREF(local_type); Py_XINCREF(local_value); *type = local_type; *value = local_value; *tb = local_tb; #if CYTHON_FAST_THREAD_STATE #if CYTHON_USE_EXC_INFO_STACK { _PyErr_StackItem *exc_info = tstate->exc_info; #if PY_VERSION_HEX >= 0x030B00a4 tmp_value = exc_info->exc_value; exc_info->exc_value = local_value; tmp_type = NULL; tmp_tb = NULL; Py_XDECREF(local_type); Py_XDECREF(local_tb); #else tmp_type = exc_info->exc_type; tmp_value = exc_info->exc_value; tmp_tb = exc_info->exc_traceback; exc_info->exc_type = local_type; exc_info->exc_value = local_value; exc_info->exc_traceback = local_tb; #endif } #else tmp_type = tstate->exc_type; tmp_value = tstate->exc_value; tmp_tb = tstate->exc_traceback; tstate->exc_type = local_type; tstate->exc_value = local_value; tstate->exc_traceback = local_tb; #endif Py_XDECREF(tmp_type); Py_XDECREF(tmp_value); Py_XDECREF(tmp_tb); #else PyErr_SetExcInfo(local_type, local_value, local_tb); #endif return 0; bad: *type = 0; *value = 0; *tb = 0; Py_XDECREF(local_type); Py_XDECREF(local_value); Py_XDECREF(local_tb); return -1; } /* pep479 */ static void __Pyx_Generator_Replace_StopIteration(int in_async_gen) { PyObject *exc, *val, *tb, *cur_exc; __Pyx_PyThreadState_declare #ifdef __Pyx_StopAsyncIteration_USED int is_async_stopiteration = 0; #endif CYTHON_MAYBE_UNUSED_VAR(in_async_gen); cur_exc = PyErr_Occurred(); if (likely(!__Pyx_PyErr_GivenExceptionMatches(cur_exc, PyExc_StopIteration))) { #ifdef __Pyx_StopAsyncIteration_USED if (in_async_gen && unlikely(__Pyx_PyErr_GivenExceptionMatches(cur_exc, __Pyx_PyExc_StopAsyncIteration))) { is_async_stopiteration = 1; } else #endif return; } __Pyx_PyThreadState_assign __Pyx_GetException(&exc, &val, &tb); Py_XDECREF(exc); Py_XDECREF(val); Py_XDECREF(tb); PyErr_SetString(PyExc_RuntimeError, #ifdef __Pyx_StopAsyncIteration_USED is_async_stopiteration ? "async generator raised StopAsyncIteration" : in_async_gen ? "async generator raised StopIteration" : #endif "generator raised StopIteration"); } /* SwapException */ #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx__ExceptionSwap(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { PyObject *tmp_type, *tmp_value, *tmp_tb; #if CYTHON_USE_EXC_INFO_STACK && PY_VERSION_HEX >= 0x030B00a4 _PyErr_StackItem *exc_info = tstate->exc_info; tmp_value = exc_info->exc_value; exc_info->exc_value = *value; if (tmp_value == NULL || tmp_value == Py_None) { Py_XDECREF(tmp_value); tmp_value = NULL; tmp_type = NULL; tmp_tb = NULL; } else { tmp_type = (PyObject*) Py_TYPE(tmp_value); Py_INCREF(tmp_type); #if CYTHON_COMPILING_IN_CPYTHON tmp_tb = ((PyBaseExceptionObject*) tmp_value)->traceback; Py_XINCREF(tmp_tb); #else tmp_tb = PyException_GetTraceback(tmp_value); #endif } #elif CYTHON_USE_EXC_INFO_STACK _PyErr_StackItem *exc_info = tstate->exc_info; tmp_type = exc_info->exc_type; tmp_value = exc_info->exc_value; tmp_tb = exc_info->exc_traceback; exc_info->exc_type = *type; exc_info->exc_value = *value; exc_info->exc_traceback = *tb; #else tmp_type = tstate->exc_type; tmp_value = tstate->exc_value; tmp_tb = tstate->exc_traceback; tstate->exc_type = *type; tstate->exc_value = *value; tstate->exc_traceback = *tb; #endif *type = tmp_type; *value = tmp_value; *tb = tmp_tb; } #else static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb) { PyObject *tmp_type, *tmp_value, *tmp_tb; PyErr_GetExcInfo(&tmp_type, &tmp_value, &tmp_tb); PyErr_SetExcInfo(*type, *value, *tb); *type = tmp_type; *value = tmp_value; *tb = tmp_tb; } #endif /* GetTopmostException */ #if CYTHON_USE_EXC_INFO_STACK && CYTHON_FAST_THREAD_STATE static _PyErr_StackItem * __Pyx_PyErr_GetTopmostException(PyThreadState *tstate) { _PyErr_StackItem *exc_info = tstate->exc_info; while ((exc_info->exc_value == NULL || exc_info->exc_value == Py_None) && exc_info->previous_item != NULL) { exc_info = exc_info->previous_item; } return exc_info; } #endif /* SaveResetException */ #if CYTHON_FAST_THREAD_STATE static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { #if CYTHON_USE_EXC_INFO_STACK && PY_VERSION_HEX >= 0x030B00a4 _PyErr_StackItem *exc_info = __Pyx_PyErr_GetTopmostException(tstate); PyObject *exc_value = exc_info->exc_value; if (exc_value == NULL || exc_value == Py_None) { *value = NULL; *type = NULL; *tb = NULL; } else { *value = exc_value; Py_INCREF(*value); *type = (PyObject*) Py_TYPE(exc_value); Py_INCREF(*type); *tb = PyException_GetTraceback(exc_value); } #elif CYTHON_USE_EXC_INFO_STACK _PyErr_StackItem *exc_info = __Pyx_PyErr_GetTopmostException(tstate); *type = exc_info->exc_type; *value = exc_info->exc_value; *tb = exc_info->exc_traceback; Py_XINCREF(*type); Py_XINCREF(*value); Py_XINCREF(*tb); #else *type = tstate->exc_type; *value = tstate->exc_value; *tb = tstate->exc_traceback; Py_XINCREF(*type); Py_XINCREF(*value); Py_XINCREF(*tb); #endif } static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { #if CYTHON_USE_EXC_INFO_STACK && PY_VERSION_HEX >= 0x030B00a4 _PyErr_StackItem *exc_info = tstate->exc_info; PyObject *tmp_value = exc_info->exc_value; exc_info->exc_value = value; Py_XDECREF(tmp_value); Py_XDECREF(type); Py_XDECREF(tb); #else PyObject *tmp_type, *tmp_value, *tmp_tb; #if CYTHON_USE_EXC_INFO_STACK _PyErr_StackItem *exc_info = tstate->exc_info; tmp_type = exc_info->exc_type; tmp_value = exc_info->exc_value; tmp_tb = exc_info->exc_traceback; exc_info->exc_type = type; exc_info->exc_value = value; exc_info->exc_traceback = tb; #else tmp_type = tstate->exc_type; tmp_value = tstate->exc_value; tmp_tb = tstate->exc_traceback; tstate->exc_type = type; tstate->exc_value = value; tstate->exc_traceback = tb; #endif Py_XDECREF(tmp_type); Py_XDECREF(tmp_value); Py_XDECREF(tmp_tb); #endif } #endif /* RaiseUnboundLocalError */ static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname) { PyErr_Format(PyExc_UnboundLocalError, "local variable '%s' referenced before assignment", varname); } /* UnpackUnboundCMethod */ static PyObject *__Pyx_SelflessCall(PyObject *method, PyObject *args, PyObject *kwargs) { PyObject *result; PyObject *selfless_args = PyTuple_GetSlice(args, 1, PyTuple_Size(args)); if (unlikely(!selfless_args)) return NULL; result = PyObject_Call(method, selfless_args, kwargs); Py_DECREF(selfless_args); return result; } static PyMethodDef __Pyx_UnboundCMethod_Def = { "CythonUnboundCMethod", __PYX_REINTERPRET_FUNCION(PyCFunction, __Pyx_SelflessCall), METH_VARARGS | METH_KEYWORDS, NULL }; static int __Pyx_TryUnpackUnboundCMethod(__Pyx_CachedCFunction* target) { PyObject *method; method = __Pyx_PyObject_GetAttrStr(target->type, *target->method_name); if (unlikely(!method)) return -1; target->method = method; #if CYTHON_COMPILING_IN_CPYTHON #if PY_MAJOR_VERSION >= 3 if (likely(__Pyx_TypeCheck(method, &PyMethodDescr_Type))) #else if (likely(!__Pyx_CyOrPyCFunction_Check(method))) #endif { PyMethodDescrObject *descr = (PyMethodDescrObject*) method; target->func = descr->d_method->ml_meth; target->flag = descr->d_method->ml_flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_STACKLESS); } else #endif #if CYTHON_COMPILING_IN_PYPY #else if (PyCFunction_Check(method)) #endif { PyObject *self; int self_found; #if CYTHON_COMPILING_IN_LIMITED_API || CYTHON_COMPILING_IN_PYPY self = PyObject_GetAttrString(method, "__self__"); if (!self) { PyErr_Clear(); } #else self = PyCFunction_GET_SELF(method); #endif self_found = (self && self != Py_None); #if CYTHON_COMPILING_IN_LIMITED_API || CYTHON_COMPILING_IN_PYPY Py_XDECREF(self); #endif if (self_found) { PyObject *unbound_method = PyCFunction_New(&__Pyx_UnboundCMethod_Def, method); if (unlikely(!unbound_method)) return -1; Py_DECREF(method); target->method = unbound_method; } } return 0; } /* CallUnboundCMethod1 */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_CallUnboundCMethod1(__Pyx_CachedCFunction* cfunc, PyObject* self, PyObject* arg) { if (likely(cfunc->func)) { int flag = cfunc->flag; if (flag == METH_O) { return (*(cfunc->func))(self, arg); } else if ((PY_VERSION_HEX >= 0x030600B1) && flag == METH_FASTCALL) { #if PY_VERSION_HEX >= 0x030700A0 return (*(__Pyx_PyCFunctionFast)(void*)(PyCFunction)cfunc->func)(self, &arg, 1); #else return (*(__Pyx_PyCFunctionFastWithKeywords)(void*)(PyCFunction)cfunc->func)(self, &arg, 1, NULL); #endif } else if ((PY_VERSION_HEX >= 0x030700A0) && flag == (METH_FASTCALL | METH_KEYWORDS)) { return (*(__Pyx_PyCFunctionFastWithKeywords)(void*)(PyCFunction)cfunc->func)(self, &arg, 1, NULL); } } return __Pyx__CallUnboundCMethod1(cfunc, self, arg); } #endif static PyObject* __Pyx__CallUnboundCMethod1(__Pyx_CachedCFunction* cfunc, PyObject* self, PyObject* arg){ PyObject *args, *result = NULL; if (unlikely(!cfunc->func && !cfunc->method) && unlikely(__Pyx_TryUnpackUnboundCMethod(cfunc) < 0)) return NULL; #if CYTHON_COMPILING_IN_CPYTHON if (cfunc->func && (cfunc->flag & METH_VARARGS)) { args = PyTuple_New(1); if (unlikely(!args)) goto bad; Py_INCREF(arg); PyTuple_SET_ITEM(args, 0, arg); if (cfunc->flag & METH_KEYWORDS) result = (*(PyCFunctionWithKeywords)(void*)(PyCFunction)cfunc->func)(self, args, NULL); else result = (*cfunc->func)(self, args); } else { args = PyTuple_New(2); if (unlikely(!args)) goto bad; Py_INCREF(self); PyTuple_SET_ITEM(args, 0, self); Py_INCREF(arg); PyTuple_SET_ITEM(args, 1, arg); result = __Pyx_PyObject_Call(cfunc->method, args, NULL); } #else args = PyTuple_Pack(2, self, arg); if (unlikely(!args)) goto bad; result = __Pyx_PyObject_Call(cfunc->method, args, NULL); #endif bad: Py_XDECREF(args); return result; } /* RaiseUnexpectedTypeError */ static int __Pyx_RaiseUnexpectedTypeError(const char *expected, PyObject *obj) { __Pyx_TypeName obj_type_name = __Pyx_PyType_GetName(Py_TYPE(obj)); PyErr_Format(PyExc_TypeError, "Expected %s, got " __Pyx_FMT_TYPENAME, expected, obj_type_name); __Pyx_DECREF_TypeName(obj_type_name); return 0; } /* PyFunctionFastCall */ #if CYTHON_FAST_PYCALL && !CYTHON_VECTORCALL static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args, Py_ssize_t na, PyObject *globals) { PyFrameObject *f; PyThreadState *tstate = __Pyx_PyThreadState_Current; PyObject **fastlocals; Py_ssize_t i; PyObject *result; assert(globals != NULL); /* XXX Perhaps we should create a specialized PyFrame_New() that doesn't take locals, but does take builtins without sanity checking them. */ assert(tstate != NULL); f = PyFrame_New(tstate, co, globals, NULL); if (f == NULL) { return NULL; } fastlocals = __Pyx_PyFrame_GetLocalsplus(f); for (i = 0; i < na; i++) { Py_INCREF(*args); fastlocals[i] = *args++; } result = PyEval_EvalFrameEx(f,0); ++tstate->recursion_depth; Py_DECREF(f); --tstate->recursion_depth; return result; } static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, Py_ssize_t nargs, PyObject *kwargs) { PyCodeObject *co = (PyCodeObject *)PyFunction_GET_CODE(func); PyObject *globals = PyFunction_GET_GLOBALS(func); PyObject *argdefs = PyFunction_GET_DEFAULTS(func); PyObject *closure; #if PY_MAJOR_VERSION >= 3 PyObject *kwdefs; #endif PyObject *kwtuple, **k; PyObject **d; Py_ssize_t nd; Py_ssize_t nk; PyObject *result; assert(kwargs == NULL || PyDict_Check(kwargs)); nk = kwargs ? PyDict_Size(kwargs) : 0; #if PY_MAJOR_VERSION < 3 if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) { return NULL; } #else if (unlikely(Py_EnterRecursiveCall(" while calling a Python object"))) { return NULL; } #endif if ( #if PY_MAJOR_VERSION >= 3 co->co_kwonlyargcount == 0 && #endif likely(kwargs == NULL || nk == 0) && co->co_flags == (CO_OPTIMIZED | CO_NEWLOCALS | CO_NOFREE)) { if (argdefs == NULL && co->co_argcount == nargs) { result = __Pyx_PyFunction_FastCallNoKw(co, args, nargs, globals); goto done; } else if (nargs == 0 && argdefs != NULL && co->co_argcount == Py_SIZE(argdefs)) { /* function called with no arguments, but all parameters have a default value: use default values as arguments .*/ args = &PyTuple_GET_ITEM(argdefs, 0); result =__Pyx_PyFunction_FastCallNoKw(co, args, Py_SIZE(argdefs), globals); goto done; } } if (kwargs != NULL) { Py_ssize_t pos, i; kwtuple = PyTuple_New(2 * nk); if (kwtuple == NULL) { result = NULL; goto done; } k = &PyTuple_GET_ITEM(kwtuple, 0); pos = i = 0; while (PyDict_Next(kwargs, &pos, &k[i], &k[i+1])) { Py_INCREF(k[i]); Py_INCREF(k[i+1]); i += 2; } nk = i / 2; } else { kwtuple = NULL; k = NULL; } closure = PyFunction_GET_CLOSURE(func); #if PY_MAJOR_VERSION >= 3 kwdefs = PyFunction_GET_KW_DEFAULTS(func); #endif if (argdefs != NULL) { d = &PyTuple_GET_ITEM(argdefs, 0); nd = Py_SIZE(argdefs); } else { d = NULL; nd = 0; } #if PY_MAJOR_VERSION >= 3 result = PyEval_EvalCodeEx((PyObject*)co, globals, (PyObject *)NULL, args, (int)nargs, k, (int)nk, d, (int)nd, kwdefs, closure); #else result = PyEval_EvalCodeEx(co, globals, (PyObject *)NULL, args, (int)nargs, k, (int)nk, d, (int)nd, closure); #endif Py_XDECREF(kwtuple); done: Py_LeaveRecursiveCall(); return result; } #endif /* PyObjectCallMethO */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) { PyObject *self, *result; PyCFunction cfunc; cfunc = __Pyx_CyOrPyCFunction_GET_FUNCTION(func); self = __Pyx_CyOrPyCFunction_GET_SELF(func); #if PY_MAJOR_VERSION < 3 if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) return NULL; #else if (unlikely(Py_EnterRecursiveCall(" while calling a Python object"))) return NULL; #endif result = cfunc(self, arg); Py_LeaveRecursiveCall(); if (unlikely(!result) && unlikely(!PyErr_Occurred())) { PyErr_SetString( PyExc_SystemError, "NULL result without error in PyObject_Call"); } return result; } #endif /* PyObjectFastCall */ #if PY_VERSION_HEX < 0x03090000 || CYTHON_COMPILING_IN_LIMITED_API static PyObject* __Pyx_PyObject_FastCall_fallback(PyObject *func, PyObject **args, size_t nargs, PyObject *kwargs) { PyObject *argstuple; PyObject *result = 0; size_t i; argstuple = PyTuple_New((Py_ssize_t)nargs); if (unlikely(!argstuple)) return NULL; for (i = 0; i < nargs; i++) { Py_INCREF(args[i]); if (__Pyx_PyTuple_SET_ITEM(argstuple, (Py_ssize_t)i, args[i]) < 0) goto bad; } result = __Pyx_PyObject_Call(func, argstuple, kwargs); bad: Py_DECREF(argstuple); return result; } #endif static CYTHON_INLINE PyObject* __Pyx_PyObject_FastCallDict(PyObject *func, PyObject **args, size_t _nargs, PyObject *kwargs) { Py_ssize_t nargs = __Pyx_PyVectorcall_NARGS(_nargs); #if CYTHON_COMPILING_IN_CPYTHON if (nargs == 0 && kwargs == NULL) { if (__Pyx_CyOrPyCFunction_Check(func) && likely( __Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_NOARGS)) return __Pyx_PyObject_CallMethO(func, NULL); } else if (nargs == 1 && kwargs == NULL) { if (__Pyx_CyOrPyCFunction_Check(func) && likely( __Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_O)) return __Pyx_PyObject_CallMethO(func, args[0]); } #endif #if PY_VERSION_HEX < 0x030800B1 #if CYTHON_FAST_PYCCALL if (PyCFunction_Check(func)) { if (kwargs) { return _PyCFunction_FastCallDict(func, args, nargs, kwargs); } else { return _PyCFunction_FastCallKeywords(func, args, nargs, NULL); } } #if PY_VERSION_HEX >= 0x030700A1 if (!kwargs && __Pyx_IS_TYPE(func, &PyMethodDescr_Type)) { return _PyMethodDescr_FastCallKeywords(func, args, nargs, NULL); } #endif #endif #if CYTHON_FAST_PYCALL if (PyFunction_Check(func)) { return __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs); } #endif #endif if (kwargs == NULL) { #if CYTHON_VECTORCALL #if PY_VERSION_HEX < 0x03090000 vectorcallfunc f = _PyVectorcall_Function(func); #else vectorcallfunc f = PyVectorcall_Function(func); #endif if (f) { return f(func, args, (size_t)nargs, NULL); } #elif defined(__Pyx_CyFunction_USED) && CYTHON_BACKPORT_VECTORCALL if (__Pyx_CyFunction_CheckExact(func)) { __pyx_vectorcallfunc f = __Pyx_CyFunction_func_vectorcall(func); if (f) return f(func, args, (size_t)nargs, NULL); } #endif } if (nargs == 0) { return __Pyx_PyObject_Call(func, __pyx_empty_tuple, kwargs); } #if PY_VERSION_HEX >= 0x03090000 && !CYTHON_COMPILING_IN_LIMITED_API return PyObject_VectorcallDict(func, args, (size_t)nargs, kwargs); #else return __Pyx_PyObject_FastCall_fallback(func, args, (size_t)nargs, kwargs); #endif } /* PyObjectCall2Args */ static CYTHON_INLINE PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2) { PyObject *args[3] = {NULL, arg1, arg2}; return __Pyx_PyObject_FastCall(function, args+1, 2 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET); } /* PyObjectCallOneArg */ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { PyObject *args[2] = {NULL, arg}; return __Pyx_PyObject_FastCall(func, args+1, 1 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET); } /* PyObjectGetMethod */ static int __Pyx_PyObject_GetMethod(PyObject *obj, PyObject *name, PyObject **method) { PyObject *attr; #if CYTHON_UNPACK_METHODS && CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_PYTYPE_LOOKUP __Pyx_TypeName type_name; PyTypeObject *tp = Py_TYPE(obj); PyObject *descr; descrgetfunc f = NULL; PyObject **dictptr, *dict; int meth_found = 0; assert (*method == NULL); if (unlikely(tp->tp_getattro != PyObject_GenericGetAttr)) { attr = __Pyx_PyObject_GetAttrStr(obj, name); goto try_unpack; } if (unlikely(tp->tp_dict == NULL) && unlikely(PyType_Ready(tp) < 0)) { return 0; } descr = _PyType_Lookup(tp, name); if (likely(descr != NULL)) { Py_INCREF(descr); #if defined(Py_TPFLAGS_METHOD_DESCRIPTOR) && Py_TPFLAGS_METHOD_DESCRIPTOR if (__Pyx_PyType_HasFeature(Py_TYPE(descr), Py_TPFLAGS_METHOD_DESCRIPTOR)) #elif PY_MAJOR_VERSION >= 3 #ifdef __Pyx_CyFunction_USED if (likely(PyFunction_Check(descr) || __Pyx_IS_TYPE(descr, &PyMethodDescr_Type) || __Pyx_CyFunction_Check(descr))) #else if (likely(PyFunction_Check(descr) || __Pyx_IS_TYPE(descr, &PyMethodDescr_Type))) #endif #else #ifdef __Pyx_CyFunction_USED if (likely(PyFunction_Check(descr) || __Pyx_CyFunction_Check(descr))) #else if (likely(PyFunction_Check(descr))) #endif #endif { meth_found = 1; } else { f = Py_TYPE(descr)->tp_descr_get; if (f != NULL && PyDescr_IsData(descr)) { attr = f(descr, obj, (PyObject *)Py_TYPE(obj)); Py_DECREF(descr); goto try_unpack; } } } dictptr = _PyObject_GetDictPtr(obj); if (dictptr != NULL && (dict = *dictptr) != NULL) { Py_INCREF(dict); attr = __Pyx_PyDict_GetItemStr(dict, name); if (attr != NULL) { Py_INCREF(attr); Py_DECREF(dict); Py_XDECREF(descr); goto try_unpack; } Py_DECREF(dict); } if (meth_found) { *method = descr; return 1; } if (f != NULL) { attr = f(descr, obj, (PyObject *)Py_TYPE(obj)); Py_DECREF(descr); goto try_unpack; } if (likely(descr != NULL)) { *method = descr; return 0; } type_name = __Pyx_PyType_GetName(tp); PyErr_Format(PyExc_AttributeError, #if PY_MAJOR_VERSION >= 3 "'" __Pyx_FMT_TYPENAME "' object has no attribute '%U'", type_name, name); #else "'" __Pyx_FMT_TYPENAME "' object has no attribute '%.400s'", type_name, PyString_AS_STRING(name)); #endif __Pyx_DECREF_TypeName(type_name); return 0; #else attr = __Pyx_PyObject_GetAttrStr(obj, name); goto try_unpack; #endif try_unpack: #if CYTHON_UNPACK_METHODS if (likely(attr) && PyMethod_Check(attr) && likely(PyMethod_GET_SELF(attr) == obj)) { PyObject *function = PyMethod_GET_FUNCTION(attr); Py_INCREF(function); Py_DECREF(attr); *method = function; return 1; } #endif *method = attr; return 0; } /* PyObjectCallMethod1 */ #if !(CYTHON_VECTORCALL && __PYX_LIMITED_VERSION_HEX >= 0x030C00A2) static PyObject* __Pyx__PyObject_CallMethod1(PyObject* method, PyObject* arg) { PyObject *result = __Pyx_PyObject_CallOneArg(method, arg); Py_DECREF(method); return result; } #endif static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg) { #if CYTHON_VECTORCALL && __PYX_LIMITED_VERSION_HEX >= 0x030C00A2 PyObject *args[2] = {obj, arg}; (void) __Pyx_PyObject_GetMethod; (void) __Pyx_PyObject_CallOneArg; (void) __Pyx_PyObject_Call2Args; return PyObject_VectorcallMethod(method_name, args, 2 | PY_VECTORCALL_ARGUMENTS_OFFSET, NULL); #else PyObject *method = NULL, *result; int is_method = __Pyx_PyObject_GetMethod(obj, method_name, &method); if (likely(is_method)) { result = __Pyx_PyObject_Call2Args(method, obj, arg); Py_DECREF(method); return result; } if (unlikely(!method)) return NULL; return __Pyx__PyObject_CallMethod1(method, arg); #endif } /* append */ static CYTHON_INLINE int __Pyx_PyObject_Append(PyObject* L, PyObject* x) { if (likely(PyList_CheckExact(L))) { if (unlikely(__Pyx_PyList_Append(L, x) < 0)) return -1; } else { PyObject* retval = __Pyx_PyObject_CallMethod1(L, __pyx_n_s_append, x); if (unlikely(!retval)) return -1; Py_DECREF(retval); } return 0; } /* PySequenceMultiply */ static PyObject* __Pyx_PySequence_Multiply_Generic(PyObject *seq, Py_ssize_t mul) { PyObject *result, *pymul = PyInt_FromSsize_t(mul); if (unlikely(!pymul)) return NULL; result = PyNumber_Multiply(seq, pymul); Py_DECREF(pymul); return result; } static CYTHON_INLINE PyObject* __Pyx_PySequence_Multiply(PyObject *seq, Py_ssize_t mul) { #if CYTHON_USE_TYPE_SLOTS PyTypeObject *type = Py_TYPE(seq); if (likely(type->tp_as_sequence && type->tp_as_sequence->sq_repeat)) { return type->tp_as_sequence->sq_repeat(seq, mul); } else #endif { return __Pyx_PySequence_Multiply_Generic(seq, mul); } } /* GetItemInt */ static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { PyObject *r; if (unlikely(!j)) return NULL; r = PyObject_GetItem(o, j); Py_DECREF(j); return r; } static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, CYTHON_NCP_UNUSED int wraparound, CYTHON_NCP_UNUSED int boundscheck) { #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS Py_ssize_t wrapped_i = i; if (wraparound & unlikely(i < 0)) { wrapped_i += PyList_GET_SIZE(o); } if ((!boundscheck) || likely(__Pyx_is_valid_index(wrapped_i, PyList_GET_SIZE(o)))) { PyObject *r = PyList_GET_ITEM(o, wrapped_i); Py_INCREF(r); return r; } return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); #else return PySequence_GetItem(o, i); #endif } static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, CYTHON_NCP_UNUSED int wraparound, CYTHON_NCP_UNUSED int boundscheck) { #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS Py_ssize_t wrapped_i = i; if (wraparound & unlikely(i < 0)) { wrapped_i += PyTuple_GET_SIZE(o); } if ((!boundscheck) || likely(__Pyx_is_valid_index(wrapped_i, PyTuple_GET_SIZE(o)))) { PyObject *r = PyTuple_GET_ITEM(o, wrapped_i); Py_INCREF(r); return r; } return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); #else return PySequence_GetItem(o, i); #endif } static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list, CYTHON_NCP_UNUSED int wraparound, CYTHON_NCP_UNUSED int boundscheck) { #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS if (is_list || PyList_CheckExact(o)) { Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o); if ((!boundscheck) || (likely(__Pyx_is_valid_index(n, PyList_GET_SIZE(o))))) { PyObject *r = PyList_GET_ITEM(o, n); Py_INCREF(r); return r; } } else if (PyTuple_CheckExact(o)) { Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o); if ((!boundscheck) || likely(__Pyx_is_valid_index(n, PyTuple_GET_SIZE(o)))) { PyObject *r = PyTuple_GET_ITEM(o, n); Py_INCREF(r); return r; } } else { PyMappingMethods *mm = Py_TYPE(o)->tp_as_mapping; PySequenceMethods *sm = Py_TYPE(o)->tp_as_sequence; if (mm && mm->mp_subscript) { PyObject *r, *key = PyInt_FromSsize_t(i); if (unlikely(!key)) return NULL; r = mm->mp_subscript(o, key); Py_DECREF(key); return r; } if (likely(sm && sm->sq_item)) { if (wraparound && unlikely(i < 0) && likely(sm->sq_length)) { Py_ssize_t l = sm->sq_length(o); if (likely(l >= 0)) { i += l; } else { if (!PyErr_ExceptionMatches(PyExc_OverflowError)) return NULL; PyErr_Clear(); } } return sm->sq_item(o, i); } } #else if (is_list || !PyMapping_Check(o)) { return PySequence_GetItem(o, i); } #endif return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); } /* StringJoin */ static CYTHON_INLINE PyObject* __Pyx_PyBytes_Join(PyObject* sep, PyObject* values) { (void) __Pyx_PyObject_CallMethod1; #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION < 3 return _PyString_Join(sep, values); #elif CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030d0000 return _PyBytes_Join(sep, values); #else return __Pyx_PyObject_CallMethod1(sep, __pyx_n_s_join, values); #endif } /* PyIntCompare */ static CYTHON_INLINE int __Pyx_PyInt_BoolNeObjC(PyObject *op1, PyObject *op2, long intval, long inplace) { CYTHON_MAYBE_UNUSED_VAR(intval); CYTHON_UNUSED_VAR(inplace); if (op1 == op2) { return 0; } #if PY_MAJOR_VERSION < 3 if (likely(PyInt_CheckExact(op1))) { const long b = intval; long a = PyInt_AS_LONG(op1); return (a != b); } #endif #if CYTHON_USE_PYLONG_INTERNALS if (likely(PyLong_CheckExact(op1))) { int unequal; unsigned long uintval; Py_ssize_t size = __Pyx_PyLong_DigitCount(op1); const digit* digits = __Pyx_PyLong_Digits(op1); if (intval == 0) { return (__Pyx_PyLong_IsZero(op1) != 1); } else if (intval < 0) { if (__Pyx_PyLong_IsNonNeg(op1)) return 1; intval = -intval; } else { if (__Pyx_PyLong_IsNeg(op1)) return 1; } uintval = (unsigned long) intval; #if PyLong_SHIFT * 4 < SIZEOF_LONG*8 if (uintval >> (PyLong_SHIFT * 4)) { unequal = (size != 5) || (digits[0] != (uintval & (unsigned long) PyLong_MASK)) | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[4] != ((uintval >> (4 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)); } else #endif #if PyLong_SHIFT * 3 < SIZEOF_LONG*8 if (uintval >> (PyLong_SHIFT * 3)) { unequal = (size != 4) || (digits[0] != (uintval & (unsigned long) PyLong_MASK)) | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)); } else #endif #if PyLong_SHIFT * 2 < SIZEOF_LONG*8 if (uintval >> (PyLong_SHIFT * 2)) { unequal = (size != 3) || (digits[0] != (uintval & (unsigned long) PyLong_MASK)) | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)); } else #endif #if PyLong_SHIFT * 1 < SIZEOF_LONG*8 if (uintval >> (PyLong_SHIFT * 1)) { unequal = (size != 2) || (digits[0] != (uintval & (unsigned long) PyLong_MASK)) | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)); } else #endif unequal = (size != 1) || (((unsigned long) digits[0]) != (uintval & (unsigned long) PyLong_MASK)); return (unequal != 0); } #endif if (PyFloat_CheckExact(op1)) { const long b = intval; #if CYTHON_COMPILING_IN_LIMITED_API double a = __pyx_PyFloat_AsDouble(op1); #else double a = PyFloat_AS_DOUBLE(op1); #endif return ((double)a != (double)b); } return __Pyx_PyObject_IsTrueAndDecref( PyObject_RichCompare(op1, op2, Py_NE)); } /* PyObjectSetAttrStr */ #if CYTHON_USE_TYPE_SLOTS static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value) { PyTypeObject* tp = Py_TYPE(obj); if (likely(tp->tp_setattro)) return tp->tp_setattro(obj, attr_name, value); #if PY_MAJOR_VERSION < 3 if (likely(tp->tp_setattr)) return tp->tp_setattr(obj, PyString_AS_STRING(attr_name), value); #endif return PyObject_SetAttr(obj, attr_name, value); } #endif /* KeywordStringCheck */ static int __Pyx_CheckKeywordStrings( PyObject *kw, const char* function_name, int kw_allowed) { PyObject* key = 0; Py_ssize_t pos = 0; #if CYTHON_COMPILING_IN_PYPY if (!kw_allowed && PyDict_Next(kw, &pos, &key, 0)) goto invalid_keyword; return 1; #else if (CYTHON_METH_FASTCALL && likely(PyTuple_Check(kw))) { Py_ssize_t kwsize; #if CYTHON_ASSUME_SAFE_MACROS kwsize = PyTuple_GET_SIZE(kw); #else kwsize = PyTuple_Size(kw); if (kwsize < 0) return 0; #endif if (unlikely(kwsize == 0)) return 1; if (!kw_allowed) { #if CYTHON_ASSUME_SAFE_MACROS key = PyTuple_GET_ITEM(kw, 0); #else key = PyTuple_GetItem(kw, pos); if (!key) return 0; #endif goto invalid_keyword; } #if PY_VERSION_HEX < 0x03090000 for (pos = 0; pos < kwsize; pos++) { #if CYTHON_ASSUME_SAFE_MACROS key = PyTuple_GET_ITEM(kw, pos); #else key = PyTuple_GetItem(kw, pos); if (!key) return 0; #endif if (unlikely(!PyUnicode_Check(key))) goto invalid_keyword_type; } #endif return 1; } while (PyDict_Next(kw, &pos, &key, 0)) { #if PY_MAJOR_VERSION < 3 if (unlikely(!PyString_Check(key))) #endif if (unlikely(!PyUnicode_Check(key))) goto invalid_keyword_type; } if (!kw_allowed && unlikely(key)) goto invalid_keyword; return 1; invalid_keyword_type: PyErr_Format(PyExc_TypeError, "%.200s() keywords must be strings", function_name); return 0; #endif invalid_keyword: #if PY_MAJOR_VERSION < 3 PyErr_Format(PyExc_TypeError, "%.200s() got an unexpected keyword argument '%.200s'", function_name, PyString_AsString(key)); #else PyErr_Format(PyExc_TypeError, "%s() got an unexpected keyword argument '%U'", function_name, key); #endif return 0; } /* RaiseDoubleKeywords */ static void __Pyx_RaiseDoubleKeywordsError( const char* func_name, PyObject* kw_name) { PyErr_Format(PyExc_TypeError, #if PY_MAJOR_VERSION >= 3 "%s() got multiple values for keyword argument '%U'", func_name, kw_name); #else "%s() got multiple values for keyword argument '%s'", func_name, PyString_AsString(kw_name)); #endif } /* ParseKeywords */ static int __Pyx_ParseOptionalKeywords( PyObject *kwds, PyObject *const *kwvalues, PyObject **argnames[], PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, const char* function_name) { PyObject *key = 0, *value = 0; Py_ssize_t pos = 0; PyObject*** name; PyObject*** first_kw_arg = argnames + num_pos_args; int kwds_is_tuple = CYTHON_METH_FASTCALL && likely(PyTuple_Check(kwds)); while (1) { Py_XDECREF(key); key = NULL; Py_XDECREF(value); value = NULL; if (kwds_is_tuple) { Py_ssize_t size; #if CYTHON_ASSUME_SAFE_MACROS size = PyTuple_GET_SIZE(kwds); #else size = PyTuple_Size(kwds); if (size < 0) goto bad; #endif if (pos >= size) break; #if CYTHON_AVOID_BORROWED_REFS key = __Pyx_PySequence_ITEM(kwds, pos); if (!key) goto bad; #elif CYTHON_ASSUME_SAFE_MACROS key = PyTuple_GET_ITEM(kwds, pos); #else key = PyTuple_GetItem(kwds, pos); if (!key) goto bad; #endif value = kwvalues[pos]; pos++; } else { if (!PyDict_Next(kwds, &pos, &key, &value)) break; #if CYTHON_AVOID_BORROWED_REFS Py_INCREF(key); #endif } name = first_kw_arg; while (*name && (**name != key)) name++; if (*name) { values[name-argnames] = value; #if CYTHON_AVOID_BORROWED_REFS Py_INCREF(value); Py_DECREF(key); #endif key = NULL; value = NULL; continue; } #if !CYTHON_AVOID_BORROWED_REFS Py_INCREF(key); #endif Py_INCREF(value); name = first_kw_arg; #if PY_MAJOR_VERSION < 3 if (likely(PyString_Check(key))) { while (*name) { if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key)) && _PyString_Eq(**name, key)) { values[name-argnames] = value; #if CYTHON_AVOID_BORROWED_REFS value = NULL; #endif break; } name++; } if (*name) continue; else { PyObject*** argname = argnames; while (argname != first_kw_arg) { if ((**argname == key) || ( (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key)) && _PyString_Eq(**argname, key))) { goto arg_passed_twice; } argname++; } } } else #endif if (likely(PyUnicode_Check(key))) { while (*name) { int cmp = ( #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 (__Pyx_PyUnicode_GET_LENGTH(**name) != __Pyx_PyUnicode_GET_LENGTH(key)) ? 1 : #endif PyUnicode_Compare(**name, key) ); if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; if (cmp == 0) { values[name-argnames] = value; #if CYTHON_AVOID_BORROWED_REFS value = NULL; #endif break; } name++; } if (*name) continue; else { PyObject*** argname = argnames; while (argname != first_kw_arg) { int cmp = (**argname == key) ? 0 : #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 (__Pyx_PyUnicode_GET_LENGTH(**argname) != __Pyx_PyUnicode_GET_LENGTH(key)) ? 1 : #endif PyUnicode_Compare(**argname, key); if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad; if (cmp == 0) goto arg_passed_twice; argname++; } } } else goto invalid_keyword_type; if (kwds2) { if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad; } else { goto invalid_keyword; } } Py_XDECREF(key); Py_XDECREF(value); return 0; arg_passed_twice: __Pyx_RaiseDoubleKeywordsError(function_name, key); goto bad; invalid_keyword_type: PyErr_Format(PyExc_TypeError, "%.200s() keywords must be strings", function_name); goto bad; invalid_keyword: #if PY_MAJOR_VERSION < 3 PyErr_Format(PyExc_TypeError, "%.200s() got an unexpected keyword argument '%.200s'", function_name, PyString_AsString(key)); #else PyErr_Format(PyExc_TypeError, "%s() got an unexpected keyword argument '%U'", function_name, key); #endif bad: Py_XDECREF(key); Py_XDECREF(value); return -1; } /* RaiseArgTupleInvalid */ static void __Pyx_RaiseArgtupleInvalid( const char* func_name, int exact, Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found) { Py_ssize_t num_expected; const char *more_or_less; if (num_found < num_min) { num_expected = num_min; more_or_less = "at least"; } else { num_expected = num_max; more_or_less = "at most"; } if (exact) { more_or_less = "exactly"; } PyErr_Format(PyExc_TypeError, "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)", func_name, more_or_less, num_expected, (num_expected == 1) ? "" : "s", num_found); } /* ObjectGetItem */ #if CYTHON_USE_TYPE_SLOTS static PyObject *__Pyx_PyObject_GetIndex(PyObject *obj, PyObject *index) { PyObject *runerr = NULL; Py_ssize_t key_value; key_value = __Pyx_PyIndex_AsSsize_t(index); if (likely(key_value != -1 || !(runerr = PyErr_Occurred()))) { return __Pyx_GetItemInt_Fast(obj, key_value, 0, 1, 1); } if (PyErr_GivenExceptionMatches(runerr, PyExc_OverflowError)) { __Pyx_TypeName index_type_name = __Pyx_PyType_GetName(Py_TYPE(index)); PyErr_Clear(); PyErr_Format(PyExc_IndexError, "cannot fit '" __Pyx_FMT_TYPENAME "' into an index-sized integer", index_type_name); __Pyx_DECREF_TypeName(index_type_name); } return NULL; } static PyObject *__Pyx_PyObject_GetItem_Slow(PyObject *obj, PyObject *key) { __Pyx_TypeName obj_type_name; if (likely(PyType_Check(obj))) { PyObject *meth = __Pyx_PyObject_GetAttrStrNoError(obj, __pyx_n_s_class_getitem); if (!meth) { PyErr_Clear(); } else { PyObject *result = __Pyx_PyObject_CallOneArg(meth, key); Py_DECREF(meth); return result; } } obj_type_name = __Pyx_PyType_GetName(Py_TYPE(obj)); PyErr_Format(PyExc_TypeError, "'" __Pyx_FMT_TYPENAME "' object is not subscriptable", obj_type_name); __Pyx_DECREF_TypeName(obj_type_name); return NULL; } static PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject *key) { PyTypeObject *tp = Py_TYPE(obj); PyMappingMethods *mm = tp->tp_as_mapping; PySequenceMethods *sm = tp->tp_as_sequence; if (likely(mm && mm->mp_subscript)) { return mm->mp_subscript(obj, key); } if (likely(sm && sm->sq_item)) { return __Pyx_PyObject_GetIndex(obj, key); } return __Pyx_PyObject_GetItem_Slow(obj, key); } #endif /* IterFinish */ static CYTHON_INLINE int __Pyx_IterFinish(void) { PyObject* exc_type; __Pyx_PyThreadState_declare __Pyx_PyThreadState_assign exc_type = __Pyx_PyErr_CurrentExceptionType(); if (unlikely(exc_type)) { if (unlikely(!__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) return -1; __Pyx_PyErr_Clear(); return 0; } return 0; } /* PyObjectCallNoArg */ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func) { PyObject *arg[2] = {NULL, NULL}; return __Pyx_PyObject_FastCall(func, arg + 1, 0 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET); } /* PyObjectCallMethod0 */ static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name) { PyObject *method = NULL, *result = NULL; int is_method = __Pyx_PyObject_GetMethod(obj, method_name, &method); if (likely(is_method)) { result = __Pyx_PyObject_CallOneArg(method, obj); Py_DECREF(method); return result; } if (unlikely(!method)) goto bad; result = __Pyx_PyObject_CallNoArg(method); Py_DECREF(method); bad: return result; } /* RaiseNeedMoreValuesToUnpack */ static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { PyErr_Format(PyExc_ValueError, "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", index, (index == 1) ? "" : "s"); } /* RaiseTooManyValuesToUnpack */ static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { PyErr_Format(PyExc_ValueError, "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); } /* UnpackItemEndCheck */ static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { if (unlikely(retval)) { Py_DECREF(retval); __Pyx_RaiseTooManyValuesError(expected); return -1; } return __Pyx_IterFinish(); } /* RaiseNoneIterError */ static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); } /* UnpackTupleError */ static void __Pyx_UnpackTupleError(PyObject *t, Py_ssize_t index) { if (t == Py_None) { __Pyx_RaiseNoneNotIterableError(); } else if (PyTuple_GET_SIZE(t) < index) { __Pyx_RaiseNeedMoreValuesError(PyTuple_GET_SIZE(t)); } else { __Pyx_RaiseTooManyValuesError(index); } } /* UnpackTuple2 */ static CYTHON_INLINE int __Pyx_unpack_tuple2_exact( PyObject* tuple, PyObject** pvalue1, PyObject** pvalue2, int decref_tuple) { PyObject *value1 = NULL, *value2 = NULL; #if CYTHON_COMPILING_IN_PYPY value1 = PySequence_ITEM(tuple, 0); if (unlikely(!value1)) goto bad; value2 = PySequence_ITEM(tuple, 1); if (unlikely(!value2)) goto bad; #else value1 = PyTuple_GET_ITEM(tuple, 0); Py_INCREF(value1); value2 = PyTuple_GET_ITEM(tuple, 1); Py_INCREF(value2); #endif if (decref_tuple) { Py_DECREF(tuple); } *pvalue1 = value1; *pvalue2 = value2; return 0; #if CYTHON_COMPILING_IN_PYPY bad: Py_XDECREF(value1); Py_XDECREF(value2); if (decref_tuple) { Py_XDECREF(tuple); } return -1; #endif } static int __Pyx_unpack_tuple2_generic(PyObject* tuple, PyObject** pvalue1, PyObject** pvalue2, int has_known_size, int decref_tuple) { Py_ssize_t index; PyObject *value1 = NULL, *value2 = NULL, *iter = NULL; iternextfunc iternext; iter = PyObject_GetIter(tuple); if (unlikely(!iter)) goto bad; if (decref_tuple) { Py_DECREF(tuple); tuple = NULL; } iternext = __Pyx_PyObject_GetIterNextFunc(iter); value1 = iternext(iter); if (unlikely(!value1)) { index = 0; goto unpacking_failed; } value2 = iternext(iter); if (unlikely(!value2)) { index = 1; goto unpacking_failed; } if (!has_known_size && unlikely(__Pyx_IternextUnpackEndCheck(iternext(iter), 2))) goto bad; Py_DECREF(iter); *pvalue1 = value1; *pvalue2 = value2; return 0; unpacking_failed: if (!has_known_size && __Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index); bad: Py_XDECREF(iter); Py_XDECREF(value1); Py_XDECREF(value2); if (decref_tuple) { Py_XDECREF(tuple); } return -1; } /* dict_iter */ #if CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3 #include <string.h> #endif static CYTHON_INLINE PyObject* __Pyx_dict_iterator(PyObject* iterable, int is_dict, PyObject* method_name, Py_ssize_t* p_orig_length, int* p_source_is_dict) { is_dict = is_dict || likely(PyDict_CheckExact(iterable)); *p_source_is_dict = is_dict; if (is_dict) { #if !CYTHON_COMPILING_IN_PYPY *p_orig_length = PyDict_Size(iterable); Py_INCREF(iterable); return iterable; #elif PY_MAJOR_VERSION >= 3 static PyObject *py_items = NULL, *py_keys = NULL, *py_values = NULL; PyObject **pp = NULL; if (method_name) { const char *name = PyUnicode_AsUTF8(method_name); if (strcmp(name, "iteritems") == 0) pp = &py_items; else if (strcmp(name, "iterkeys") == 0) pp = &py_keys; else if (strcmp(name, "itervalues") == 0) pp = &py_values; if (pp) { if (!*pp) { *pp = PyUnicode_FromString(name + 4); if (!*pp) return NULL; } method_name = *pp; } } #endif } *p_orig_length = 0; if (method_name) { PyObject* iter; iterable = __Pyx_PyObject_CallMethod0(iterable, method_name); if (!iterable) return NULL; #if !CYTHON_COMPILING_IN_PYPY if (PyTuple_CheckExact(iterable) || PyList_CheckExact(iterable)) return iterable; #endif iter = PyObject_GetIter(iterable); Py_DECREF(iterable); return iter; } return PyObject_GetIter(iterable); } static CYTHON_INLINE int __Pyx_dict_iter_next( PyObject* iter_obj, CYTHON_NCP_UNUSED Py_ssize_t orig_length, CYTHON_NCP_UNUSED Py_ssize_t* ppos, PyObject** pkey, PyObject** pvalue, PyObject** pitem, int source_is_dict) { PyObject* next_item; #if !CYTHON_COMPILING_IN_PYPY if (source_is_dict) { PyObject *key, *value; if (unlikely(orig_length != PyDict_Size(iter_obj))) { PyErr_SetString(PyExc_RuntimeError, "dictionary changed size during iteration"); return -1; } if (unlikely(!PyDict_Next(iter_obj, ppos, &key, &value))) { return 0; } if (pitem) { PyObject* tuple = PyTuple_New(2); if (unlikely(!tuple)) { return -1; } Py_INCREF(key); Py_INCREF(value); PyTuple_SET_ITEM(tuple, 0, key); PyTuple_SET_ITEM(tuple, 1, value); *pitem = tuple; } else { if (pkey) { Py_INCREF(key); *pkey = key; } if (pvalue) { Py_INCREF(value); *pvalue = value; } } return 1; } else if (PyTuple_CheckExact(iter_obj)) { Py_ssize_t pos = *ppos; if (unlikely(pos >= PyTuple_GET_SIZE(iter_obj))) return 0; *ppos = pos + 1; next_item = PyTuple_GET_ITEM(iter_obj, pos); Py_INCREF(next_item); } else if (PyList_CheckExact(iter_obj)) { Py_ssize_t pos = *ppos; if (unlikely(pos >= PyList_GET_SIZE(iter_obj))) return 0; *ppos = pos + 1; next_item = PyList_GET_ITEM(iter_obj, pos); Py_INCREF(next_item); } else #endif { next_item = PyIter_Next(iter_obj); if (unlikely(!next_item)) { return __Pyx_IterFinish(); } } if (pitem) { *pitem = next_item; } else if (pkey && pvalue) { if (__Pyx_unpack_tuple2(next_item, pkey, pvalue, source_is_dict, source_is_dict, 1)) return -1; } else if (pkey) { *pkey = next_item; } else { *pvalue = next_item; } return 1; } /* GetAttr3 */ #if __PYX_LIMITED_VERSION_HEX < 0x030d00A1 static PyObject *__Pyx_GetAttr3Default(PyObject *d) { __Pyx_PyThreadState_declare __Pyx_PyThreadState_assign if (unlikely(!__Pyx_PyErr_ExceptionMatches(PyExc_AttributeError))) return NULL; __Pyx_PyErr_Clear(); Py_INCREF(d); return d; } #endif static CYTHON_INLINE PyObject *__Pyx_GetAttr3(PyObject *o, PyObject *n, PyObject *d) { PyObject *r; #if __PYX_LIMITED_VERSION_HEX >= 0x030d00A1 int res = PyObject_GetOptionalAttr(o, n, &r); return (res != 0) ? r : __Pyx_NewRef(d); #else #if CYTHON_USE_TYPE_SLOTS if (likely(PyString_Check(n))) { r = __Pyx_PyObject_GetAttrStrNoError(o, n); if (unlikely(!r) && likely(!PyErr_Occurred())) { r = __Pyx_NewRef(d); } return r; } #endif r = PyObject_GetAttr(o, n); return (likely(r)) ? r : __Pyx_GetAttr3Default(d); #endif } /* PyDictVersioning */ #if CYTHON_USE_DICT_VERSIONS && CYTHON_USE_TYPE_SLOTS static CYTHON_INLINE PY_UINT64_T __Pyx_get_tp_dict_version(PyObject *obj) { PyObject *dict = Py_TYPE(obj)->tp_dict; return likely(dict) ? __PYX_GET_DICT_VERSION(dict) : 0; } static CYTHON_INLINE PY_UINT64_T __Pyx_get_object_dict_version(PyObject *obj) { PyObject **dictptr = NULL; Py_ssize_t offset = Py_TYPE(obj)->tp_dictoffset; if (offset) { #if CYTHON_COMPILING_IN_CPYTHON dictptr = (likely(offset > 0)) ? (PyObject **) ((char *)obj + offset) : _PyObject_GetDictPtr(obj); #else dictptr = _PyObject_GetDictPtr(obj); #endif } return (dictptr && *dictptr) ? __PYX_GET_DICT_VERSION(*dictptr) : 0; } static CYTHON_INLINE int __Pyx_object_dict_version_matches(PyObject* obj, PY_UINT64_T tp_dict_version, PY_UINT64_T obj_dict_version) { PyObject *dict = Py_TYPE(obj)->tp_dict; if (unlikely(!dict) || unlikely(tp_dict_version != __PYX_GET_DICT_VERSION(dict))) return 0; return obj_dict_version == __Pyx_get_object_dict_version(obj); } #endif /* GetModuleGlobalName */ #if CYTHON_USE_DICT_VERSIONS static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value) #else static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name) #endif { PyObject *result; #if !CYTHON_AVOID_BORROWED_REFS #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 && PY_VERSION_HEX < 0x030d0000 result = _PyDict_GetItem_KnownHash(__pyx_d, name, ((PyASCIIObject *) name)->hash); __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version) if (likely(result)) { return __Pyx_NewRef(result); } else if (unlikely(PyErr_Occurred())) { return NULL; } #elif CYTHON_COMPILING_IN_LIMITED_API if (unlikely(!__pyx_m)) { return NULL; } result = PyObject_GetAttr(__pyx_m, name); if (likely(result)) { return result; } #else result = PyDict_GetItem(__pyx_d, name); __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version) if (likely(result)) { return __Pyx_NewRef(result); } #endif #else result = PyObject_GetItem(__pyx_d, name); __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version) if (likely(result)) { return __Pyx_NewRef(result); } PyErr_Clear(); #endif return __Pyx_GetBuiltinName(name); } /* CallUnboundCMethod0 */ static PyObject* __Pyx__CallUnboundCMethod0(__Pyx_CachedCFunction* cfunc, PyObject* self) { PyObject *args, *result = NULL; if (unlikely(!cfunc->method) && unlikely(__Pyx_TryUnpackUnboundCMethod(cfunc) < 0)) return NULL; #if CYTHON_ASSUME_SAFE_MACROS args = PyTuple_New(1); if (unlikely(!args)) goto bad; Py_INCREF(self); PyTuple_SET_ITEM(args, 0, self); #else args = PyTuple_Pack(1, self); if (unlikely(!args)) goto bad; #endif result = __Pyx_PyObject_Call(cfunc->method, args, NULL); Py_DECREF(args); bad: return result; } /* py_dict_items */ static CYTHON_INLINE PyObject* __Pyx_PyDict_Items(PyObject* d) { if (PY_MAJOR_VERSION >= 3) return __Pyx_CallUnboundCMethod0(&__pyx_umethod_PyDict_Type_items, d); else return PyDict_Items(d); } /* WriteUnraisableException */ static void __Pyx_WriteUnraisable(const char *name, int clineno, int lineno, const char *filename, int full_traceback, int nogil) { PyObject *old_exc, *old_val, *old_tb; PyObject *ctx; __Pyx_PyThreadState_declare #ifdef WITH_THREAD PyGILState_STATE state; if (nogil) state = PyGILState_Ensure(); else state = (PyGILState_STATE)0; #endif CYTHON_UNUSED_VAR(clineno); CYTHON_UNUSED_VAR(lineno); CYTHON_UNUSED_VAR(filename); CYTHON_MAYBE_UNUSED_VAR(nogil); __Pyx_PyThreadState_assign __Pyx_ErrFetch(&old_exc, &old_val, &old_tb); if (full_traceback) { Py_XINCREF(old_exc); Py_XINCREF(old_val); Py_XINCREF(old_tb); __Pyx_ErrRestore(old_exc, old_val, old_tb); PyErr_PrintEx(0); } #if PY_MAJOR_VERSION < 3 ctx = PyString_FromString(name); #else ctx = PyUnicode_FromString(name); #endif __Pyx_ErrRestore(old_exc, old_val, old_tb); if (!ctx) { PyErr_WriteUnraisable(Py_None); } else { PyErr_WriteUnraisable(ctx); Py_DECREF(ctx); } #ifdef WITH_THREAD if (nogil) PyGILState_Release(state); #endif } /* ArgTypeTest */ static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact) { __Pyx_TypeName type_name; __Pyx_TypeName obj_type_name; if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; } else if (exact) { #if PY_MAJOR_VERSION == 2 if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1; #endif } else { if (likely(__Pyx_TypeCheck(obj, type))) return 1; } type_name = __Pyx_PyType_GetName(type); obj_type_name = __Pyx_PyType_GetName(Py_TYPE(obj)); PyErr_Format(PyExc_TypeError, "Argument '%.200s' has incorrect type (expected " __Pyx_FMT_TYPENAME ", got " __Pyx_FMT_TYPENAME ")", name, type_name, obj_type_name); __Pyx_DECREF_TypeName(type_name); __Pyx_DECREF_TypeName(obj_type_name); return 0; } /* DictGetItem */ #if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) { PyObject *value; value = PyDict_GetItemWithError(d, key); if (unlikely(!value)) { if (!PyErr_Occurred()) { if (unlikely(PyTuple_Check(key))) { PyObject* args = PyTuple_Pack(1, key); if (likely(args)) { PyErr_SetObject(PyExc_KeyError, args); Py_DECREF(args); } } else { PyErr_SetObject(PyExc_KeyError, key); } } return NULL; } Py_INCREF(value); return value; } #endif /* CallUnboundCMethod2 */ #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030600B1 static CYTHON_INLINE PyObject *__Pyx_CallUnboundCMethod2(__Pyx_CachedCFunction *cfunc, PyObject *self, PyObject *arg1, PyObject *arg2) { if (likely(cfunc->func)) { PyObject *args[2] = {arg1, arg2}; if (cfunc->flag == METH_FASTCALL) { #if PY_VERSION_HEX >= 0x030700A0 return (*(__Pyx_PyCFunctionFast)(void*)(PyCFunction)cfunc->func)(self, args, 2); #else return (*(__Pyx_PyCFunctionFastWithKeywords)(void*)(PyCFunction)cfunc->func)(self, args, 2, NULL); #endif } #if PY_VERSION_HEX >= 0x030700A0 if (cfunc->flag == (METH_FASTCALL | METH_KEYWORDS)) return (*(__Pyx_PyCFunctionFastWithKeywords)(void*)(PyCFunction)cfunc->func)(self, args, 2, NULL); #endif } return __Pyx__CallUnboundCMethod2(cfunc, self, arg1, arg2); } #endif static PyObject* __Pyx__CallUnboundCMethod2(__Pyx_CachedCFunction* cfunc, PyObject* self, PyObject* arg1, PyObject* arg2){ PyObject *args, *result = NULL; if (unlikely(!cfunc->func && !cfunc->method) && unlikely(__Pyx_TryUnpackUnboundCMethod(cfunc) < 0)) return NULL; #if CYTHON_COMPILING_IN_CPYTHON if (cfunc->func && (cfunc->flag & METH_VARARGS)) { args = PyTuple_New(2); if (unlikely(!args)) goto bad; Py_INCREF(arg1); PyTuple_SET_ITEM(args, 0, arg1); Py_INCREF(arg2); PyTuple_SET_ITEM(args, 1, arg2); if (cfunc->flag & METH_KEYWORDS) result = (*(PyCFunctionWithKeywords)(void*)(PyCFunction)cfunc->func)(self, args, NULL); else result = (*cfunc->func)(self, args); } else { args = PyTuple_New(3); if (unlikely(!args)) goto bad; Py_INCREF(self); PyTuple_SET_ITEM(args, 0, self); Py_INCREF(arg1); PyTuple_SET_ITEM(args, 1, arg1); Py_INCREF(arg2); PyTuple_SET_ITEM(args, 2, arg2); result = __Pyx_PyObject_Call(cfunc->method, args, NULL); } #else args = PyTuple_Pack(3, self, arg1, arg2); if (unlikely(!args)) goto bad; result = __Pyx_PyObject_Call(cfunc->method, args, NULL); #endif bad: Py_XDECREF(args); return result; } /* py_dict_pop */ static CYTHON_INLINE PyObject *__Pyx_PyDict_Pop(PyObject *d, PyObject *key, PyObject *default_value) { #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX > 0x030600B3 & PY_VERSION_HEX < 0x030d0000 if ((1)) { return _PyDict_Pop(d, key, default_value); } else #endif if (default_value) { return __Pyx_CallUnboundCMethod2(&__pyx_umethod_PyDict_Type_pop, d, key, default_value); } else { return __Pyx_CallUnboundCMethod1(&__pyx_umethod_PyDict_Type_pop, d, key); } } /* SetItemInt */ static int __Pyx_SetItemInt_Generic(PyObject *o, PyObject *j, PyObject *v) { int r; if (unlikely(!j)) return -1; r = PyObject_SetItem(o, j, v); Py_DECREF(j); return r; } static CYTHON_INLINE int __Pyx_SetItemInt_Fast(PyObject *o, Py_ssize_t i, PyObject *v, int is_list, CYTHON_NCP_UNUSED int wraparound, CYTHON_NCP_UNUSED int boundscheck) { #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS if (is_list || PyList_CheckExact(o)) { Py_ssize_t n = (!wraparound) ? i : ((likely(i >= 0)) ? i : i + PyList_GET_SIZE(o)); if ((!boundscheck) || likely(__Pyx_is_valid_index(n, PyList_GET_SIZE(o)))) { PyObject* old = PyList_GET_ITEM(o, n); Py_INCREF(v); PyList_SET_ITEM(o, n, v); Py_DECREF(old); return 1; } } else { PyMappingMethods *mm = Py_TYPE(o)->tp_as_mapping; PySequenceMethods *sm = Py_TYPE(o)->tp_as_sequence; if (mm && mm->mp_ass_subscript) { int r; PyObject *key = PyInt_FromSsize_t(i); if (unlikely(!key)) return -1; r = mm->mp_ass_subscript(o, key, v); Py_DECREF(key); return r; } if (likely(sm && sm->sq_ass_item)) { if (wraparound && unlikely(i < 0) && likely(sm->sq_length)) { Py_ssize_t l = sm->sq_length(o); if (likely(l >= 0)) { i += l; } else { if (!PyErr_ExceptionMatches(PyExc_OverflowError)) return -1; PyErr_Clear(); } } return sm->sq_ass_item(o, i, v); } } #else if (is_list || !PyMapping_Check(o)) { return PySequence_SetItem(o, i, v); } #endif return __Pyx_SetItemInt_Generic(o, PyInt_FromSsize_t(i), v); } /* PyIntBinop */ #if !CYTHON_COMPILING_IN_PYPY static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, long intval, int inplace, int zerodivision_check) { CYTHON_MAYBE_UNUSED_VAR(intval); CYTHON_MAYBE_UNUSED_VAR(inplace); CYTHON_UNUSED_VAR(zerodivision_check); #if PY_MAJOR_VERSION < 3 if (likely(PyInt_CheckExact(op1))) { const long b = intval; long x; long a = PyInt_AS_LONG(op1); x = (long)((unsigned long)a - (unsigned long)b); if (likely((x^a) >= 0 || (x^~b) >= 0)) return PyInt_FromLong(x); return PyLong_Type.tp_as_number->nb_subtract(op1, op2); } #endif #if CYTHON_USE_PYLONG_INTERNALS if (likely(PyLong_CheckExact(op1))) { const long b = intval; long a, x; #ifdef HAVE_LONG_LONG const PY_LONG_LONG llb = intval; PY_LONG_LONG lla, llx; #endif if (unlikely(__Pyx_PyLong_IsZero(op1))) { return PyLong_FromLong(-intval); } if (likely(__Pyx_PyLong_IsCompact(op1))) { a = __Pyx_PyLong_CompactValue(op1); } else { const digit* digits = __Pyx_PyLong_Digits(op1); const Py_ssize_t size = __Pyx_PyLong_SignedDigitCount(op1); switch (size) { case -2: if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); break; #ifdef HAVE_LONG_LONG } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); goto long_long; #endif } CYTHON_FALLTHROUGH; case 2: if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); break; #ifdef HAVE_LONG_LONG } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); goto long_long; #endif } CYTHON_FALLTHROUGH; case -3: if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); break; #ifdef HAVE_LONG_LONG } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); goto long_long; #endif } CYTHON_FALLTHROUGH; case 3: if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); break; #ifdef HAVE_LONG_LONG } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); goto long_long; #endif } CYTHON_FALLTHROUGH; case -4: if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); break; #ifdef HAVE_LONG_LONG } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); goto long_long; #endif } CYTHON_FALLTHROUGH; case 4: if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); break; #ifdef HAVE_LONG_LONG } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); goto long_long; #endif } CYTHON_FALLTHROUGH; default: return PyLong_Type.tp_as_number->nb_subtract(op1, op2); } } x = a - b; return PyLong_FromLong(x); #ifdef HAVE_LONG_LONG long_long: llx = lla - llb; return PyLong_FromLongLong(llx); #endif } #endif if (PyFloat_CheckExact(op1)) { const long b = intval; #if CYTHON_COMPILING_IN_LIMITED_API double a = __pyx_PyFloat_AsDouble(op1); #else double a = PyFloat_AS_DOUBLE(op1); #endif double result; PyFPE_START_PROTECT("subtract", return NULL) result = ((double)a) - (double)b; PyFPE_END_PROTECT(result) return PyFloat_FromDouble(result); } return (inplace ? PyNumber_InPlaceSubtract : PyNumber_Subtract)(op1, op2); } #endif /* RaiseClosureNameError */ static CYTHON_INLINE void __Pyx_RaiseClosureNameError(const char *varname) { PyErr_Format(PyExc_NameError, "free variable '%s' referenced before assignment in enclosing scope", varname); } /* ExtTypeTest */ static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { __Pyx_TypeName obj_type_name; __Pyx_TypeName type_name; if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; } if (likely(__Pyx_TypeCheck(obj, type))) return 1; obj_type_name = __Pyx_PyType_GetName(Py_TYPE(obj)); type_name = __Pyx_PyType_GetName(type); PyErr_Format(PyExc_TypeError, "Cannot convert " __Pyx_FMT_TYPENAME " to " __Pyx_FMT_TYPENAME, obj_type_name, type_name); __Pyx_DECREF_TypeName(obj_type_name); __Pyx_DECREF_TypeName(type_name); return 0; } /* SliceObject */ static CYTHON_INLINE PyObject* __Pyx_PyObject_GetSlice(PyObject* obj, Py_ssize_t cstart, Py_ssize_t cstop, PyObject** _py_start, PyObject** _py_stop, PyObject** _py_slice, int has_cstart, int has_cstop, int wraparound) { __Pyx_TypeName obj_type_name; #if CYTHON_USE_TYPE_SLOTS PyMappingMethods* mp; #if PY_MAJOR_VERSION < 3 PySequenceMethods* ms = Py_TYPE(obj)->tp_as_sequence; if (likely(ms && ms->sq_slice)) { if (!has_cstart) { if (_py_start && (*_py_start != Py_None)) { cstart = __Pyx_PyIndex_AsSsize_t(*_py_start); if ((cstart == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad; } else cstart = 0; } if (!has_cstop) { if (_py_stop && (*_py_stop != Py_None)) { cstop = __Pyx_PyIndex_AsSsize_t(*_py_stop); if ((cstop == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad; } else cstop = PY_SSIZE_T_MAX; } if (wraparound && unlikely((cstart < 0) | (cstop < 0)) && likely(ms->sq_length)) { Py_ssize_t l = ms->sq_length(obj); if (likely(l >= 0)) { if (cstop < 0) { cstop += l; if (cstop < 0) cstop = 0; } if (cstart < 0) { cstart += l; if (cstart < 0) cstart = 0; } } else { if (!PyErr_ExceptionMatches(PyExc_OverflowError)) goto bad; PyErr_Clear(); } } return ms->sq_slice(obj, cstart, cstop); } #else CYTHON_UNUSED_VAR(wraparound); #endif mp = Py_TYPE(obj)->tp_as_mapping; if (likely(mp && mp->mp_subscript)) #else CYTHON_UNUSED_VAR(wraparound); #endif { PyObject* result; PyObject *py_slice, *py_start, *py_stop; if (_py_slice) { py_slice = *_py_slice; } else { PyObject* owned_start = NULL; PyObject* owned_stop = NULL; if (_py_start) { py_start = *_py_start; } else { if (has_cstart) { owned_start = py_start = PyInt_FromSsize_t(cstart); if (unlikely(!py_start)) goto bad; } else py_start = Py_None; } if (_py_stop) { py_stop = *_py_stop; } else { if (has_cstop) { owned_stop = py_stop = PyInt_FromSsize_t(cstop); if (unlikely(!py_stop)) { Py_XDECREF(owned_start); goto bad; } } else py_stop = Py_None; } py_slice = PySlice_New(py_start, py_stop, Py_None); Py_XDECREF(owned_start); Py_XDECREF(owned_stop); if (unlikely(!py_slice)) goto bad; } #if CYTHON_USE_TYPE_SLOTS result = mp->mp_subscript(obj, py_slice); #else result = PyObject_GetItem(obj, py_slice); #endif if (!_py_slice) { Py_DECREF(py_slice); } return result; } obj_type_name = __Pyx_PyType_GetName(Py_TYPE(obj)); PyErr_Format(PyExc_TypeError, "'" __Pyx_FMT_TYPENAME "' object is unsliceable", obj_type_name); __Pyx_DECREF_TypeName(obj_type_name); bad: return NULL; } /* Import */ static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { PyObject *module = 0; PyObject *empty_dict = 0; PyObject *empty_list = 0; #if PY_MAJOR_VERSION < 3 PyObject *py_import; py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); if (unlikely(!py_import)) goto bad; if (!from_list) { empty_list = PyList_New(0); if (unlikely(!empty_list)) goto bad; from_list = empty_list; } #endif empty_dict = PyDict_New(); if (unlikely(!empty_dict)) goto bad; { #if PY_MAJOR_VERSION >= 3 if (level == -1) { if (strchr(__Pyx_MODULE_NAME, '.') != NULL) { module = PyImport_ImportModuleLevelObject( name, __pyx_d, empty_dict, from_list, 1); if (unlikely(!module)) { if (unlikely(!PyErr_ExceptionMatches(PyExc_ImportError))) goto bad; PyErr_Clear(); } } level = 0; } #endif if (!module) { #if PY_MAJOR_VERSION < 3 PyObject *py_level = PyInt_FromLong(level); if (unlikely(!py_level)) goto bad; module = PyObject_CallFunctionObjArgs(py_import, name, __pyx_d, empty_dict, from_list, py_level, (PyObject *)NULL); Py_DECREF(py_level); #else module = PyImport_ImportModuleLevelObject( name, __pyx_d, empty_dict, from_list, level); #endif } } bad: Py_XDECREF(empty_dict); Py_XDECREF(empty_list); #if PY_MAJOR_VERSION < 3 Py_XDECREF(py_import); #endif return module; } /* ImportFrom */ static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { PyObject* value = __Pyx_PyObject_GetAttrStr(module, name); if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) { const char* module_name_str = 0; PyObject* module_name = 0; PyObject* module_dot = 0; PyObject* full_name = 0; PyErr_Clear(); module_name_str = PyModule_GetName(module); if (unlikely(!module_name_str)) { goto modbad; } module_name = PyUnicode_FromString(module_name_str); if (unlikely(!module_name)) { goto modbad; } module_dot = PyUnicode_Concat(module_name, __pyx_kp_u__52); if (unlikely(!module_dot)) { goto modbad; } full_name = PyUnicode_Concat(module_dot, name); if (unlikely(!full_name)) { goto modbad; } #if PY_VERSION_HEX < 0x030700A1 || (CYTHON_COMPILING_IN_PYPY && PYPY_VERSION_NUM < 0x07030400) { PyObject *modules = PyImport_GetModuleDict(); if (unlikely(!modules)) goto modbad; value = PyObject_GetItem(modules, full_name); } #else value = PyImport_GetModule(full_name); #endif modbad: Py_XDECREF(full_name); Py_XDECREF(module_dot); Py_XDECREF(module_name); } if (unlikely(!value)) { PyErr_Format(PyExc_ImportError, #if PY_MAJOR_VERSION < 3 "cannot import name %.230s", PyString_AS_STRING(name)); #else "cannot import name %S", name); #endif } return value; } /* GetAttr */ static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *o, PyObject *n) { #if CYTHON_USE_TYPE_SLOTS #if PY_MAJOR_VERSION >= 3 if (likely(PyUnicode_Check(n))) #else if (likely(PyString_Check(n))) #endif return __Pyx_PyObject_GetAttrStr(o, n); #endif return PyObject_GetAttr(o, n); } /* HasAttr */ static CYTHON_INLINE int __Pyx_HasAttr(PyObject *o, PyObject *n) { PyObject *r; if (unlikely(!__Pyx_PyBaseString_Check(n))) { PyErr_SetString(PyExc_TypeError, "hasattr(): attribute name must be string"); return -1; } r = __Pyx_GetAttr(o, n); if (!r) { PyErr_Clear(); return 0; } else { Py_DECREF(r); return 1; } } /* CallNextTpDealloc */ static void __Pyx_call_next_tp_dealloc(PyObject* obj, destructor current_tp_dealloc) { PyTypeObject* type = Py_TYPE(obj); destructor tp_dealloc = NULL; while (type && __Pyx_PyType_GetSlot(type, tp_dealloc, destructor) != current_tp_dealloc) type = __Pyx_PyType_GetSlot(type, tp_base, PyTypeObject*); while (type && (tp_dealloc = __Pyx_PyType_GetSlot(type, tp_dealloc, destructor)) == current_tp_dealloc) type = __Pyx_PyType_GetSlot(type, tp_base, PyTypeObject*); if (type) tp_dealloc(obj); } /* CallNextTpTraverse */ static int __Pyx_call_next_tp_traverse(PyObject* obj, visitproc v, void *a, traverseproc current_tp_traverse) { PyTypeObject* type = Py_TYPE(obj); traverseproc tp_traverse = NULL; while (type && __Pyx_PyType_GetSlot(type, tp_traverse, traverseproc) != current_tp_traverse) type = __Pyx_PyType_GetSlot(type, tp_base, PyTypeObject*); while (type && (tp_traverse = __Pyx_PyType_GetSlot(type, tp_traverse, traverseproc)) == current_tp_traverse) type = __Pyx_PyType_GetSlot(type, tp_base, PyTypeObject*); if (type && tp_traverse) return tp_traverse(obj, v, a); return 0; } /* CallNextTpClear */ static void __Pyx_call_next_tp_clear(PyObject* obj, inquiry current_tp_clear) { PyTypeObject* type = Py_TYPE(obj); inquiry tp_clear = NULL; while (type && __Pyx_PyType_GetSlot(type, tp_clear, inquiry) != current_tp_clear) type = __Pyx_PyType_GetSlot(type, tp_base, PyTypeObject*); while (type && (tp_clear = __Pyx_PyType_GetSlot(type, tp_clear, inquiry)) == current_tp_clear) type = __Pyx_PyType_GetSlot(type, tp_base, PyTypeObject*); if (type && tp_clear) tp_clear(obj); } /* FixUpExtensionType */ #if CYTHON_USE_TYPE_SPECS static int __Pyx_fix_up_extension_type_from_spec(PyType_Spec *spec, PyTypeObject *type) { #if PY_VERSION_HEX > 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API CYTHON_UNUSED_VAR(spec); CYTHON_UNUSED_VAR(type); #else const PyType_Slot *slot = spec->slots; while (slot && slot->slot && slot->slot != Py_tp_members) slot++; if (slot && slot->slot == Py_tp_members) { int changed = 0; #if !(PY_VERSION_HEX <= 0x030900b1 && CYTHON_COMPILING_IN_CPYTHON) const #endif PyMemberDef *memb = (PyMemberDef*) slot->pfunc; while (memb && memb->name) { if (memb->name[0] == '_' && memb->name[1] == '_') { #if PY_VERSION_HEX < 0x030900b1 if (strcmp(memb->name, "__weaklistoffset__") == 0) { assert(memb->type == T_PYSSIZET); assert(memb->flags == READONLY); type->tp_weaklistoffset = memb->offset; changed = 1; } else if (strcmp(memb->name, "__dictoffset__") == 0) { assert(memb->type == T_PYSSIZET); assert(memb->flags == READONLY); type->tp_dictoffset = memb->offset; changed = 1; } #if CYTHON_METH_FASTCALL else if (strcmp(memb->name, "__vectorcalloffset__") == 0) { assert(memb->type == T_PYSSIZET); assert(memb->flags == READONLY); #if PY_VERSION_HEX >= 0x030800b4 type->tp_vectorcall_offset = memb->offset; #else type->tp_print = (printfunc) memb->offset; #endif changed = 1; } #endif #else if ((0)); #endif #if PY_VERSION_HEX <= 0x030900b1 && CYTHON_COMPILING_IN_CPYTHON else if (strcmp(memb->name, "__module__") == 0) { PyObject *descr; assert(memb->type == T_OBJECT); assert(memb->flags == 0 || memb->flags == READONLY); descr = PyDescr_NewMember(type, memb); if (unlikely(!descr)) return -1; if (unlikely(PyDict_SetItem(type->tp_dict, PyDescr_NAME(descr), descr) < 0)) { Py_DECREF(descr); return -1; } Py_DECREF(descr); changed = 1; } #endif } memb++; } if (changed) PyType_Modified(type); } #endif return 0; } #endif /* ValidateBasesTuple */ #if CYTHON_COMPILING_IN_CPYTHON || CYTHON_COMPILING_IN_LIMITED_API || CYTHON_USE_TYPE_SPECS static int __Pyx_validate_bases_tuple(const char *type_name, Py_ssize_t dictoffset, PyObject *bases) { Py_ssize_t i, n; #if CYTHON_ASSUME_SAFE_MACROS n = PyTuple_GET_SIZE(bases); #else n = PyTuple_Size(bases); if (n < 0) return -1; #endif for (i = 1; i < n; i++) { #if CYTHON_AVOID_BORROWED_REFS PyObject *b0 = PySequence_GetItem(bases, i); if (!b0) return -1; #elif CYTHON_ASSUME_SAFE_MACROS PyObject *b0 = PyTuple_GET_ITEM(bases, i); #else PyObject *b0 = PyTuple_GetItem(bases, i); if (!b0) return -1; #endif PyTypeObject *b; #if PY_MAJOR_VERSION < 3 if (PyClass_Check(b0)) { PyErr_Format(PyExc_TypeError, "base class '%.200s' is an old-style class", PyString_AS_STRING(((PyClassObject*)b0)->cl_name)); #if CYTHON_AVOID_BORROWED_REFS Py_DECREF(b0); #endif return -1; } #endif b = (PyTypeObject*) b0; if (!__Pyx_PyType_HasFeature(b, Py_TPFLAGS_HEAPTYPE)) { __Pyx_TypeName b_name = __Pyx_PyType_GetName(b); PyErr_Format(PyExc_TypeError, "base class '" __Pyx_FMT_TYPENAME "' is not a heap type", b_name); __Pyx_DECREF_TypeName(b_name); #if CYTHON_AVOID_BORROWED_REFS Py_DECREF(b0); #endif return -1; } if (dictoffset == 0) { Py_ssize_t b_dictoffset = 0; #if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY b_dictoffset = b->tp_dictoffset; #else PyObject *py_b_dictoffset = PyObject_GetAttrString((PyObject*)b, "__dictoffset__"); if (!py_b_dictoffset) goto dictoffset_return; b_dictoffset = PyLong_AsSsize_t(py_b_dictoffset); Py_DECREF(py_b_dictoffset); if (b_dictoffset == -1 && PyErr_Occurred()) goto dictoffset_return; #endif if (b_dictoffset) { { __Pyx_TypeName b_name = __Pyx_PyType_GetName(b); PyErr_Format(PyExc_TypeError, "extension type '%.200s' has no __dict__ slot, " "but base type '" __Pyx_FMT_TYPENAME "' has: " "either add 'cdef dict __dict__' to the extension type " "or add '__slots__ = [...]' to the base type", type_name, b_name); __Pyx_DECREF_TypeName(b_name); } #if !(CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY) dictoffset_return: #endif #if CYTHON_AVOID_BORROWED_REFS Py_DECREF(b0); #endif return -1; } } #if CYTHON_AVOID_BORROWED_REFS Py_DECREF(b0); #endif } return 0; } #endif /* PyType_Ready */ static int __Pyx_PyType_Ready(PyTypeObject *t) { #if CYTHON_USE_TYPE_SPECS || !(CYTHON_COMPILING_IN_CPYTHON || CYTHON_COMPILING_IN_LIMITED_API) || defined(PYSTON_MAJOR_VERSION) (void)__Pyx_PyObject_CallMethod0; #if CYTHON_USE_TYPE_SPECS (void)__Pyx_validate_bases_tuple; #endif return PyType_Ready(t); #else int r; PyObject *bases = __Pyx_PyType_GetSlot(t, tp_bases, PyObject*); if (bases && unlikely(__Pyx_validate_bases_tuple(t->tp_name, t->tp_dictoffset, bases) == -1)) return -1; #if PY_VERSION_HEX >= 0x03050000 && !defined(PYSTON_MAJOR_VERSION) { int gc_was_enabled; #if PY_VERSION_HEX >= 0x030A00b1 gc_was_enabled = PyGC_Disable(); (void)__Pyx_PyObject_CallMethod0; #else PyObject *ret, *py_status; PyObject *gc = NULL; #if PY_VERSION_HEX >= 0x030700a1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM+0 >= 0x07030400) gc = PyImport_GetModule(__pyx_kp_u_gc); #endif if (unlikely(!gc)) gc = PyImport_Import(__pyx_kp_u_gc); if (unlikely(!gc)) return -1; py_status = __Pyx_PyObject_CallMethod0(gc, __pyx_kp_u_isenabled); if (unlikely(!py_status)) { Py_DECREF(gc); return -1; } gc_was_enabled = __Pyx_PyObject_IsTrue(py_status); Py_DECREF(py_status); if (gc_was_enabled > 0) { ret = __Pyx_PyObject_CallMethod0(gc, __pyx_kp_u_disable); if (unlikely(!ret)) { Py_DECREF(gc); return -1; } Py_DECREF(ret); } else if (unlikely(gc_was_enabled == -1)) { Py_DECREF(gc); return -1; } #endif t->tp_flags |= Py_TPFLAGS_HEAPTYPE; #if PY_VERSION_HEX >= 0x030A0000 t->tp_flags |= Py_TPFLAGS_IMMUTABLETYPE; #endif #else (void)__Pyx_PyObject_CallMethod0; #endif r = PyType_Ready(t); #if PY_VERSION_HEX >= 0x03050000 && !defined(PYSTON_MAJOR_VERSION) t->tp_flags &= ~Py_TPFLAGS_HEAPTYPE; #if PY_VERSION_HEX >= 0x030A00b1 if (gc_was_enabled) PyGC_Enable(); #else if (gc_was_enabled) { PyObject *tp, *v, *tb; PyErr_Fetch(&tp, &v, &tb); ret = __Pyx_PyObject_CallMethod0(gc, __pyx_kp_u_enable); if (likely(ret || r == -1)) { Py_XDECREF(ret); PyErr_Restore(tp, v, tb); } else { Py_XDECREF(tp); Py_XDECREF(v); Py_XDECREF(tb); r = -1; } } Py_DECREF(gc); #endif } #endif return r; #endif } /* PyObject_GenericGetAttrNoDict */ #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 static PyObject *__Pyx_RaiseGenericGetAttributeError(PyTypeObject *tp, PyObject *attr_name) { __Pyx_TypeName type_name = __Pyx_PyType_GetName(tp); PyErr_Format(PyExc_AttributeError, #if PY_MAJOR_VERSION >= 3 "'" __Pyx_FMT_TYPENAME "' object has no attribute '%U'", type_name, attr_name); #else "'" __Pyx_FMT_TYPENAME "' object has no attribute '%.400s'", type_name, PyString_AS_STRING(attr_name)); #endif __Pyx_DECREF_TypeName(type_name); return NULL; } static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name) { PyObject *descr; PyTypeObject *tp = Py_TYPE(obj); if (unlikely(!PyString_Check(attr_name))) { return PyObject_GenericGetAttr(obj, attr_name); } assert(!tp->tp_dictoffset); descr = _PyType_Lookup(tp, attr_name); if (unlikely(!descr)) { return __Pyx_RaiseGenericGetAttributeError(tp, attr_name); } Py_INCREF(descr); #if PY_MAJOR_VERSION < 3 if (likely(PyType_HasFeature(Py_TYPE(descr), Py_TPFLAGS_HAVE_CLASS))) #endif { descrgetfunc f = Py_TYPE(descr)->tp_descr_get; if (unlikely(f)) { PyObject *res = f(descr, obj, (PyObject *)tp); Py_DECREF(descr); return res; } } return descr; } #endif /* PyObject_GenericGetAttr */ #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name) { if (unlikely(Py_TYPE(obj)->tp_dictoffset)) { return PyObject_GenericGetAttr(obj, attr_name); } return __Pyx_PyObject_GenericGetAttrNoDict(obj, attr_name); } #endif /* SetVTable */ static int __Pyx_SetVtable(PyTypeObject *type, void *vtable) { PyObject *ob = PyCapsule_New(vtable, 0, 0); if (unlikely(!ob)) goto bad; #if CYTHON_COMPILING_IN_LIMITED_API if (unlikely(PyObject_SetAttr((PyObject *) type, __pyx_n_s_pyx_vtable, ob) < 0)) #else if (unlikely(PyDict_SetItem(type->tp_dict, __pyx_n_s_pyx_vtable, ob) < 0)) #endif goto bad; Py_DECREF(ob); return 0; bad: Py_XDECREF(ob); return -1; } /* GetVTable */ static void* __Pyx_GetVtable(PyTypeObject *type) { void* ptr; #if CYTHON_COMPILING_IN_LIMITED_API PyObject *ob = PyObject_GetAttr((PyObject *)type, __pyx_n_s_pyx_vtable); #else PyObject *ob = PyObject_GetItem(type->tp_dict, __pyx_n_s_pyx_vtable); #endif if (!ob) goto bad; ptr = PyCapsule_GetPointer(ob, 0); if (!ptr && !PyErr_Occurred()) PyErr_SetString(PyExc_RuntimeError, "invalid vtable found for imported type"); Py_DECREF(ob); return ptr; bad: Py_XDECREF(ob); return NULL; } /* MergeVTables */ #if !CYTHON_COMPILING_IN_LIMITED_API static int __Pyx_MergeVtables(PyTypeObject *type) { int i; void** base_vtables; __Pyx_TypeName tp_base_name; __Pyx_TypeName base_name; void* unknown = (void*)-1; PyObject* bases = type->tp_bases; int base_depth = 0; { PyTypeObject* base = type->tp_base; while (base) { base_depth += 1; base = base->tp_base; } } base_vtables = (void**) malloc(sizeof(void*) * (size_t)(base_depth + 1)); base_vtables[0] = unknown; for (i = 1; i < PyTuple_GET_SIZE(bases); i++) { void* base_vtable = __Pyx_GetVtable(((PyTypeObject*)PyTuple_GET_ITEM(bases, i))); if (base_vtable != NULL) { int j; PyTypeObject* base = type->tp_base; for (j = 0; j < base_depth; j++) { if (base_vtables[j] == unknown) { base_vtables[j] = __Pyx_GetVtable(base); base_vtables[j + 1] = unknown; } if (base_vtables[j] == base_vtable) { break; } else if (base_vtables[j] == NULL) { goto bad; } base = base->tp_base; } } } PyErr_Clear(); free(base_vtables); return 0; bad: tp_base_name = __Pyx_PyType_GetName(type->tp_base); base_name = __Pyx_PyType_GetName((PyTypeObject*)PyTuple_GET_ITEM(bases, i)); PyErr_Format(PyExc_TypeError, "multiple bases have vtable conflict: '" __Pyx_FMT_TYPENAME "' and '" __Pyx_FMT_TYPENAME "'", tp_base_name, base_name); __Pyx_DECREF_TypeName(tp_base_name); __Pyx_DECREF_TypeName(base_name); free(base_vtables); return -1; } #endif /* SetupReduce */ #if !CYTHON_COMPILING_IN_LIMITED_API static int __Pyx_setup_reduce_is_named(PyObject* meth, PyObject* name) { int ret; PyObject *name_attr; name_attr = __Pyx_PyObject_GetAttrStrNoError(meth, __pyx_n_s_name_2); if (likely(name_attr)) { ret = PyObject_RichCompareBool(name_attr, name, Py_EQ); } else { ret = -1; } if (unlikely(ret < 0)) { PyErr_Clear(); ret = 0; } Py_XDECREF(name_attr); return ret; } static int __Pyx_setup_reduce(PyObject* type_obj) { int ret = 0; PyObject *object_reduce = NULL; PyObject *object_getstate = NULL; PyObject *object_reduce_ex = NULL; PyObject *reduce = NULL; PyObject *reduce_ex = NULL; PyObject *reduce_cython = NULL; PyObject *setstate = NULL; PyObject *setstate_cython = NULL; PyObject *getstate = NULL; #if CYTHON_USE_PYTYPE_LOOKUP getstate = _PyType_Lookup((PyTypeObject*)type_obj, __pyx_n_s_getstate); #else getstate = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_getstate); if (!getstate && PyErr_Occurred()) { goto __PYX_BAD; } #endif if (getstate) { #if CYTHON_USE_PYTYPE_LOOKUP object_getstate = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_getstate); #else object_getstate = __Pyx_PyObject_GetAttrStrNoError((PyObject*)&PyBaseObject_Type, __pyx_n_s_getstate); if (!object_getstate && PyErr_Occurred()) { goto __PYX_BAD; } #endif if (object_getstate != getstate) { goto __PYX_GOOD; } } #if CYTHON_USE_PYTYPE_LOOKUP object_reduce_ex = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto __PYX_BAD; #else object_reduce_ex = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto __PYX_BAD; #endif reduce_ex = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce_ex); if (unlikely(!reduce_ex)) goto __PYX_BAD; if (reduce_ex == object_reduce_ex) { #if CYTHON_USE_PYTYPE_LOOKUP object_reduce = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto __PYX_BAD; #else object_reduce = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto __PYX_BAD; #endif reduce = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce); if (unlikely(!reduce)) goto __PYX_BAD; if (reduce == object_reduce || __Pyx_setup_reduce_is_named(reduce, __pyx_n_s_reduce_cython)) { reduce_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_reduce_cython); if (likely(reduce_cython)) { ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce, reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD; ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce_cython); if (unlikely(ret < 0)) goto __PYX_BAD; } else if (reduce == object_reduce || PyErr_Occurred()) { goto __PYX_BAD; } setstate = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_setstate); if (!setstate) PyErr_Clear(); if (!setstate || __Pyx_setup_reduce_is_named(setstate, __pyx_n_s_setstate_cython)) { setstate_cython = __Pyx_PyObject_GetAttrStrNoError(type_obj, __pyx_n_s_setstate_cython); if (likely(setstate_cython)) { ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate, setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD; ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate_cython); if (unlikely(ret < 0)) goto __PYX_BAD; } else if (!setstate || PyErr_Occurred()) { goto __PYX_BAD; } } PyType_Modified((PyTypeObject*)type_obj); } } goto __PYX_GOOD; __PYX_BAD: if (!PyErr_Occurred()) { __Pyx_TypeName type_obj_name = __Pyx_PyType_GetName((PyTypeObject*)type_obj); PyErr_Format(PyExc_RuntimeError, "Unable to initialize pickling for " __Pyx_FMT_TYPENAME, type_obj_name); __Pyx_DECREF_TypeName(type_obj_name); } ret = -1; __PYX_GOOD: #if !CYTHON_USE_PYTYPE_LOOKUP Py_XDECREF(object_reduce); Py_XDECREF(object_reduce_ex); Py_XDECREF(object_getstate); Py_XDECREF(getstate); #endif Py_XDECREF(reduce); Py_XDECREF(reduce_ex); Py_XDECREF(reduce_cython); Py_XDECREF(setstate); Py_XDECREF(setstate_cython); return ret; } #endif /* TypeImport */ #ifndef __PYX_HAVE_RT_ImportType_3_0_11 #define __PYX_HAVE_RT_ImportType_3_0_11 static PyTypeObject *__Pyx_ImportType_3_0_11(PyObject *module, const char *module_name, const char *class_name, size_t size, size_t alignment, enum __Pyx_ImportType_CheckSize_3_0_11 check_size) { PyObject *result = 0; char warning[200]; Py_ssize_t basicsize; Py_ssize_t itemsize; #if CYTHON_COMPILING_IN_LIMITED_API PyObject *py_basicsize; PyObject *py_itemsize; #endif result = PyObject_GetAttrString(module, class_name); if (!result) goto bad; if (!PyType_Check(result)) { PyErr_Format(PyExc_TypeError, "%.200s.%.200s is not a type object", module_name, class_name); goto bad; } #if !CYTHON_COMPILING_IN_LIMITED_API basicsize = ((PyTypeObject *)result)->tp_basicsize; itemsize = ((PyTypeObject *)result)->tp_itemsize; #else py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); if (!py_basicsize) goto bad; basicsize = PyLong_AsSsize_t(py_basicsize); Py_DECREF(py_basicsize); py_basicsize = 0; if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) goto bad; py_itemsize = PyObject_GetAttrString(result, "__itemsize__"); if (!py_itemsize) goto bad; itemsize = PyLong_AsSsize_t(py_itemsize); Py_DECREF(py_itemsize); py_itemsize = 0; if (itemsize == (Py_ssize_t)-1 && PyErr_Occurred()) goto bad; #endif if (itemsize) { if (size % alignment) { alignment = size % alignment; } if (itemsize < (Py_ssize_t)alignment) itemsize = (Py_ssize_t)alignment; } if ((size_t)(basicsize + itemsize) < size) { PyErr_Format(PyExc_ValueError, "%.200s.%.200s size changed, may indicate binary incompatibility. " "Expected %zd from C header, got %zd from PyObject", module_name, class_name, size, basicsize+itemsize); goto bad; } if (check_size == __Pyx_ImportType_CheckSize_Error_3_0_11 && ((size_t)basicsize > size || (size_t)(basicsize + itemsize) < size)) { PyErr_Format(PyExc_ValueError, "%.200s.%.200s size changed, may indicate binary incompatibility. " "Expected %zd from C header, got %zd-%zd from PyObject", module_name, class_name, size, basicsize, basicsize+itemsize); goto bad; } else if (check_size == __Pyx_ImportType_CheckSize_Warn_3_0_11 && (size_t)basicsize > size) { PyOS_snprintf(warning, sizeof(warning), "%s.%s size changed, may indicate binary incompatibility. " "Expected %zd from C header, got %zd from PyObject", module_name, class_name, size, basicsize); if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; } return (PyTypeObject *)result; bad: Py_XDECREF(result); return NULL; } #endif /* ImportDottedModule */ #if PY_MAJOR_VERSION >= 3 static PyObject *__Pyx__ImportDottedModule_Error(PyObject *name, PyObject *parts_tuple, Py_ssize_t count) { PyObject *partial_name = NULL, *slice = NULL, *sep = NULL; if (unlikely(PyErr_Occurred())) { PyErr_Clear(); } if (likely(PyTuple_GET_SIZE(parts_tuple) == count)) { partial_name = name; } else { slice = PySequence_GetSlice(parts_tuple, 0, count); if (unlikely(!slice)) goto bad; sep = PyUnicode_FromStringAndSize(".", 1); if (unlikely(!sep)) goto bad; partial_name = PyUnicode_Join(sep, slice); } PyErr_Format( #if PY_MAJOR_VERSION < 3 PyExc_ImportError, "No module named '%s'", PyString_AS_STRING(partial_name)); #else #if PY_VERSION_HEX >= 0x030600B1 PyExc_ModuleNotFoundError, #else PyExc_ImportError, #endif "No module named '%U'", partial_name); #endif bad: Py_XDECREF(sep); Py_XDECREF(slice); Py_XDECREF(partial_name); return NULL; } #endif #if PY_MAJOR_VERSION >= 3 static PyObject *__Pyx__ImportDottedModule_Lookup(PyObject *name) { PyObject *imported_module; #if PY_VERSION_HEX < 0x030700A1 || (CYTHON_COMPILING_IN_PYPY && PYPY_VERSION_NUM < 0x07030400) PyObject *modules = PyImport_GetModuleDict(); if (unlikely(!modules)) return NULL; imported_module = __Pyx_PyDict_GetItemStr(modules, name); Py_XINCREF(imported_module); #else imported_module = PyImport_GetModule(name); #endif return imported_module; } #endif #if PY_MAJOR_VERSION >= 3 static PyObject *__Pyx_ImportDottedModule_WalkParts(PyObject *module, PyObject *name, PyObject *parts_tuple) { Py_ssize_t i, nparts; nparts = PyTuple_GET_SIZE(parts_tuple); for (i=1; i < nparts && module; i++) { PyObject *part, *submodule; #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS part = PyTuple_GET_ITEM(parts_tuple, i); #else part = PySequence_ITEM(parts_tuple, i); #endif submodule = __Pyx_PyObject_GetAttrStrNoError(module, part); #if !(CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS) Py_DECREF(part); #endif Py_DECREF(module); module = submodule; } if (unlikely(!module)) { return __Pyx__ImportDottedModule_Error(name, parts_tuple, i); } return module; } #endif static PyObject *__Pyx__ImportDottedModule(PyObject *name, PyObject *parts_tuple) { #if PY_MAJOR_VERSION < 3 PyObject *module, *from_list, *star = __pyx_n_s__278; CYTHON_UNUSED_VAR(parts_tuple); from_list = PyList_New(1); if (unlikely(!from_list)) return NULL; Py_INCREF(star); PyList_SET_ITEM(from_list, 0, star); module = __Pyx_Import(name, from_list, 0); Py_DECREF(from_list); return module; #else PyObject *imported_module; PyObject *module = __Pyx_Import(name, NULL, 0); if (!parts_tuple || unlikely(!module)) return module; imported_module = __Pyx__ImportDottedModule_Lookup(name); if (likely(imported_module)) { Py_DECREF(module); return imported_module; } PyErr_Clear(); return __Pyx_ImportDottedModule_WalkParts(module, name, parts_tuple); #endif } static PyObject *__Pyx_ImportDottedModule(PyObject *name, PyObject *parts_tuple) { #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030400B1 PyObject *module = __Pyx__ImportDottedModule_Lookup(name); if (likely(module)) { PyObject *spec = __Pyx_PyObject_GetAttrStrNoError(module, __pyx_n_s_spec); if (likely(spec)) { PyObject *unsafe = __Pyx_PyObject_GetAttrStrNoError(spec, __pyx_n_s_initializing); if (likely(!unsafe || !__Pyx_PyObject_IsTrue(unsafe))) { Py_DECREF(spec); spec = NULL; } Py_XDECREF(unsafe); } if (likely(!spec)) { PyErr_Clear(); return module; } Py_DECREF(spec); Py_DECREF(module); } else if (PyErr_Occurred()) { PyErr_Clear(); } #endif return __Pyx__ImportDottedModule(name, parts_tuple); } /* FetchSharedCythonModule */ static PyObject *__Pyx_FetchSharedCythonABIModule(void) { return __Pyx_PyImport_AddModuleRef((char*) __PYX_ABI_MODULE_NAME); } /* FetchCommonType */ static int __Pyx_VerifyCachedType(PyObject *cached_type, const char *name, Py_ssize_t basicsize, Py_ssize_t expected_basicsize) { if (!PyType_Check(cached_type)) { PyErr_Format(PyExc_TypeError, "Shared Cython type %.200s is not a type object", name); return -1; } if (basicsize != expected_basicsize) { PyErr_Format(PyExc_TypeError, "Shared Cython type %.200s has the wrong size, try recompiling", name); return -1; } return 0; } #if !CYTHON_USE_TYPE_SPECS static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type) { PyObject* abi_module; const char* object_name; PyTypeObject *cached_type = NULL; abi_module = __Pyx_FetchSharedCythonABIModule(); if (!abi_module) return NULL; object_name = strrchr(type->tp_name, '.'); object_name = object_name ? object_name+1 : type->tp_name; cached_type = (PyTypeObject*) PyObject_GetAttrString(abi_module, object_name); if (cached_type) { if (__Pyx_VerifyCachedType( (PyObject *)cached_type, object_name, cached_type->tp_basicsize, type->tp_basicsize) < 0) { goto bad; } goto done; } if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad; PyErr_Clear(); if (PyType_Ready(type) < 0) goto bad; if (PyObject_SetAttrString(abi_module, object_name, (PyObject *)type) < 0) goto bad; Py_INCREF(type); cached_type = type; done: Py_DECREF(abi_module); return cached_type; bad: Py_XDECREF(cached_type); cached_type = NULL; goto done; } #else static PyTypeObject *__Pyx_FetchCommonTypeFromSpec(PyObject *module, PyType_Spec *spec, PyObject *bases) { PyObject *abi_module, *cached_type = NULL; const char* object_name = strrchr(spec->name, '.'); object_name = object_name ? object_name+1 : spec->name; abi_module = __Pyx_FetchSharedCythonABIModule(); if (!abi_module) return NULL; cached_type = PyObject_GetAttrString(abi_module, object_name); if (cached_type) { Py_ssize_t basicsize; #if CYTHON_COMPILING_IN_LIMITED_API PyObject *py_basicsize; py_basicsize = PyObject_GetAttrString(cached_type, "__basicsize__"); if (unlikely(!py_basicsize)) goto bad; basicsize = PyLong_AsSsize_t(py_basicsize); Py_DECREF(py_basicsize); py_basicsize = 0; if (unlikely(basicsize == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad; #else basicsize = likely(PyType_Check(cached_type)) ? ((PyTypeObject*) cached_type)->tp_basicsize : -1; #endif if (__Pyx_VerifyCachedType( cached_type, object_name, basicsize, spec->basicsize) < 0) { goto bad; } goto done; } if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad; PyErr_Clear(); CYTHON_UNUSED_VAR(module); cached_type = __Pyx_PyType_FromModuleAndSpec(abi_module, spec, bases); if (unlikely(!cached_type)) goto bad; if (unlikely(__Pyx_fix_up_extension_type_from_spec(spec, (PyTypeObject *) cached_type) < 0)) goto bad; if (PyObject_SetAttrString(abi_module, object_name, cached_type) < 0) goto bad; done: Py_DECREF(abi_module); assert(cached_type == NULL || PyType_Check(cached_type)); return (PyTypeObject *) cached_type; bad: Py_XDECREF(cached_type); cached_type = NULL; goto done; } #endif /* PyVectorcallFastCallDict */ #if CYTHON_METH_FASTCALL static PyObject *__Pyx_PyVectorcall_FastCallDict_kw(PyObject *func, __pyx_vectorcallfunc vc, PyObject *const *args, size_t nargs, PyObject *kw) { PyObject *res = NULL; PyObject *kwnames; PyObject **newargs; PyObject **kwvalues; Py_ssize_t i, pos; size_t j; PyObject *key, *value; unsigned long keys_are_strings; Py_ssize_t nkw = PyDict_GET_SIZE(kw); newargs = (PyObject **)PyMem_Malloc((nargs + (size_t)nkw) * sizeof(args[0])); if (unlikely(newargs == NULL)) { PyErr_NoMemory(); return NULL; } for (j = 0; j < nargs; j++) newargs[j] = args[j]; kwnames = PyTuple_New(nkw); if (unlikely(kwnames == NULL)) { PyMem_Free(newargs); return NULL; } kwvalues = newargs + nargs; pos = i = 0; keys_are_strings = Py_TPFLAGS_UNICODE_SUBCLASS; while (PyDict_Next(kw, &pos, &key, &value)) { keys_are_strings &= Py_TYPE(key)->tp_flags; Py_INCREF(key); Py_INCREF(value); PyTuple_SET_ITEM(kwnames, i, key); kwvalues[i] = value; i++; } if (unlikely(!keys_are_strings)) { PyErr_SetString(PyExc_TypeError, "keywords must be strings"); goto cleanup; } res = vc(func, newargs, nargs, kwnames); cleanup: Py_DECREF(kwnames); for (i = 0; i < nkw; i++) Py_DECREF(kwvalues[i]); PyMem_Free(newargs); return res; } static CYTHON_INLINE PyObject *__Pyx_PyVectorcall_FastCallDict(PyObject *func, __pyx_vectorcallfunc vc, PyObject *const *args, size_t nargs, PyObject *kw) { if (likely(kw == NULL) || PyDict_GET_SIZE(kw) == 0) { return vc(func, args, nargs, NULL); } return __Pyx_PyVectorcall_FastCallDict_kw(func, vc, args, nargs, kw); } #endif /* CythonFunctionShared */ #if CYTHON_COMPILING_IN_LIMITED_API static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void *cfunc) { if (__Pyx_CyFunction_Check(func)) { return PyCFunction_GetFunction(((__pyx_CyFunctionObject*)func)->func) == (PyCFunction) cfunc; } else if (PyCFunction_Check(func)) { return PyCFunction_GetFunction(func) == (PyCFunction) cfunc; } return 0; } #else static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void *cfunc) { return __Pyx_CyOrPyCFunction_Check(func) && __Pyx_CyOrPyCFunction_GET_FUNCTION(func) == (PyCFunction) cfunc; } #endif static CYTHON_INLINE void __Pyx__CyFunction_SetClassObj(__pyx_CyFunctionObject* f, PyObject* classobj) { #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API __Pyx_Py_XDECREF_SET( __Pyx_CyFunction_GetClassObj(f), ((classobj) ? __Pyx_NewRef(classobj) : NULL)); #else __Pyx_Py_XDECREF_SET( ((PyCMethodObject *) (f))->mm_class, (PyTypeObject*)((classobj) ? __Pyx_NewRef(classobj) : NULL)); #endif } static PyObject * __Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, void *closure) { CYTHON_UNUSED_VAR(closure); if (unlikely(op->func_doc == NULL)) { #if CYTHON_COMPILING_IN_LIMITED_API op->func_doc = PyObject_GetAttrString(op->func, "__doc__"); if (unlikely(!op->func_doc)) return NULL; #else if (((PyCFunctionObject*)op)->m_ml->ml_doc) { #if PY_MAJOR_VERSION >= 3 op->func_doc = PyUnicode_FromString(((PyCFunctionObject*)op)->m_ml->ml_doc); #else op->func_doc = PyString_FromString(((PyCFunctionObject*)op)->m_ml->ml_doc); #endif if (unlikely(op->func_doc == NULL)) return NULL; } else { Py_INCREF(Py_None); return Py_None; } #endif } Py_INCREF(op->func_doc); return op->func_doc; } static int __Pyx_CyFunction_set_doc(__pyx_CyFunctionObject *op, PyObject *value, void *context) { CYTHON_UNUSED_VAR(context); if (value == NULL) { value = Py_None; } Py_INCREF(value); __Pyx_Py_XDECREF_SET(op->func_doc, value); return 0; } static PyObject * __Pyx_CyFunction_get_name(__pyx_CyFunctionObject *op, void *context) { CYTHON_UNUSED_VAR(context); if (unlikely(op->func_name == NULL)) { #if CYTHON_COMPILING_IN_LIMITED_API op->func_name = PyObject_GetAttrString(op->func, "__name__"); #elif PY_MAJOR_VERSION >= 3 op->func_name = PyUnicode_InternFromString(((PyCFunctionObject*)op)->m_ml->ml_name); #else op->func_name = PyString_InternFromString(((PyCFunctionObject*)op)->m_ml->ml_name); #endif if (unlikely(op->func_name == NULL)) return NULL; } Py_INCREF(op->func_name); return op->func_name; } static int __Pyx_CyFunction_set_name(__pyx_CyFunctionObject *op, PyObject *value, void *context) { CYTHON_UNUSED_VAR(context); #if PY_MAJOR_VERSION >= 3 if (unlikely(value == NULL || !PyUnicode_Check(value))) #else if (unlikely(value == NULL || !PyString_Check(value))) #endif { PyErr_SetString(PyExc_TypeError, "__name__ must be set to a string object"); return -1; } Py_INCREF(value); __Pyx_Py_XDECREF_SET(op->func_name, value); return 0; } static PyObject * __Pyx_CyFunction_get_qualname(__pyx_CyFunctionObject *op, void *context) { CYTHON_UNUSED_VAR(context); Py_INCREF(op->func_qualname); return op->func_qualname; } static int __Pyx_CyFunction_set_qualname(__pyx_CyFunctionObject *op, PyObject *value, void *context) { CYTHON_UNUSED_VAR(context); #if PY_MAJOR_VERSION >= 3 if (unlikely(value == NULL || !PyUnicode_Check(value))) #else if (unlikely(value == NULL || !PyString_Check(value))) #endif { PyErr_SetString(PyExc_TypeError, "__qualname__ must be set to a string object"); return -1; } Py_INCREF(value); __Pyx_Py_XDECREF_SET(op->func_qualname, value); return 0; } static PyObject * __Pyx_CyFunction_get_dict(__pyx_CyFunctionObject *op, void *context) { CYTHON_UNUSED_VAR(context); if (unlikely(op->func_dict == NULL)) { op->func_dict = PyDict_New(); if (unlikely(op->func_dict == NULL)) return NULL; } Py_INCREF(op->func_dict); return op->func_dict; } static int __Pyx_CyFunction_set_dict(__pyx_CyFunctionObject *op, PyObject *value, void *context) { CYTHON_UNUSED_VAR(context); if (unlikely(value == NULL)) { PyErr_SetString(PyExc_TypeError, "function's dictionary may not be deleted"); return -1; } if (unlikely(!PyDict_Check(value))) { PyErr_SetString(PyExc_TypeError, "setting function's dictionary to a non-dict"); return -1; } Py_INCREF(value); __Pyx_Py_XDECREF_SET(op->func_dict, value); return 0; } static PyObject * __Pyx_CyFunction_get_globals(__pyx_CyFunctionObject *op, void *context) { CYTHON_UNUSED_VAR(context); Py_INCREF(op->func_globals); return op->func_globals; } static PyObject * __Pyx_CyFunction_get_closure(__pyx_CyFunctionObject *op, void *context) { CYTHON_UNUSED_VAR(op); CYTHON_UNUSED_VAR(context); Py_INCREF(Py_None); return Py_None; } static PyObject * __Pyx_CyFunction_get_code(__pyx_CyFunctionObject *op, void *context) { PyObject* result = (op->func_code) ? op->func_code : Py_None; CYTHON_UNUSED_VAR(context); Py_INCREF(result); return result; } static int __Pyx_CyFunction_init_defaults(__pyx_CyFunctionObject *op) { int result = 0; PyObject *res = op->defaults_getter((PyObject *) op); if (unlikely(!res)) return -1; #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS op->defaults_tuple = PyTuple_GET_ITEM(res, 0); Py_INCREF(op->defaults_tuple); op->defaults_kwdict = PyTuple_GET_ITEM(res, 1); Py_INCREF(op->defaults_kwdict); #else op->defaults_tuple = __Pyx_PySequence_ITEM(res, 0); if (unlikely(!op->defaults_tuple)) result = -1; else { op->defaults_kwdict = __Pyx_PySequence_ITEM(res, 1); if (unlikely(!op->defaults_kwdict)) result = -1; } #endif Py_DECREF(res); return result; } static int __Pyx_CyFunction_set_defaults(__pyx_CyFunctionObject *op, PyObject* value, void *context) { CYTHON_UNUSED_VAR(context); if (!value) { value = Py_None; } else if (unlikely(value != Py_None && !PyTuple_Check(value))) { PyErr_SetString(PyExc_TypeError, "__defaults__ must be set to a tuple object"); return -1; } PyErr_WarnEx(PyExc_RuntimeWarning, "changes to cyfunction.__defaults__ will not " "currently affect the values used in function calls", 1); Py_INCREF(value); __Pyx_Py_XDECREF_SET(op->defaults_tuple, value); return 0; } static PyObject * __Pyx_CyFunction_get_defaults(__pyx_CyFunctionObject *op, void *context) { PyObject* result = op->defaults_tuple; CYTHON_UNUSED_VAR(context); if (unlikely(!result)) { if (op->defaults_getter) { if (unlikely(__Pyx_CyFunction_init_defaults(op) < 0)) return NULL; result = op->defaults_tuple; } else { result = Py_None; } } Py_INCREF(result); return result; } static int __Pyx_CyFunction_set_kwdefaults(__pyx_CyFunctionObject *op, PyObject* value, void *context) { CYTHON_UNUSED_VAR(context); if (!value) { value = Py_None; } else if (unlikely(value != Py_None && !PyDict_Check(value))) { PyErr_SetString(PyExc_TypeError, "__kwdefaults__ must be set to a dict object"); return -1; } PyErr_WarnEx(PyExc_RuntimeWarning, "changes to cyfunction.__kwdefaults__ will not " "currently affect the values used in function calls", 1); Py_INCREF(value); __Pyx_Py_XDECREF_SET(op->defaults_kwdict, value); return 0; } static PyObject * __Pyx_CyFunction_get_kwdefaults(__pyx_CyFunctionObject *op, void *context) { PyObject* result = op->defaults_kwdict; CYTHON_UNUSED_VAR(context); if (unlikely(!result)) { if (op->defaults_getter) { if (unlikely(__Pyx_CyFunction_init_defaults(op) < 0)) return NULL; result = op->defaults_kwdict; } else { result = Py_None; } } Py_INCREF(result); return result; } static int __Pyx_CyFunction_set_annotations(__pyx_CyFunctionObject *op, PyObject* value, void *context) { CYTHON_UNUSED_VAR(context); if (!value || value == Py_None) { value = NULL; } else if (unlikely(!PyDict_Check(value))) { PyErr_SetString(PyExc_TypeError, "__annotations__ must be set to a dict object"); return -1; } Py_XINCREF(value); __Pyx_Py_XDECREF_SET(op->func_annotations, value); return 0; } static PyObject * __Pyx_CyFunction_get_annotations(__pyx_CyFunctionObject *op, void *context) { PyObject* result = op->func_annotations; CYTHON_UNUSED_VAR(context); if (unlikely(!result)) { result = PyDict_New(); if (unlikely(!result)) return NULL; op->func_annotations = result; } Py_INCREF(result); return result; } static PyObject * __Pyx_CyFunction_get_is_coroutine(__pyx_CyFunctionObject *op, void *context) { int is_coroutine; CYTHON_UNUSED_VAR(context); if (op->func_is_coroutine) { return __Pyx_NewRef(op->func_is_coroutine); } is_coroutine = op->flags & __Pyx_CYFUNCTION_COROUTINE; #if PY_VERSION_HEX >= 0x03050000 if (is_coroutine) { PyObject *module, *fromlist, *marker = __pyx_n_s_is_coroutine; fromlist = PyList_New(1); if (unlikely(!fromlist)) return NULL; Py_INCREF(marker); #if CYTHON_ASSUME_SAFE_MACROS PyList_SET_ITEM(fromlist, 0, marker); #else if (unlikely(PyList_SetItem(fromlist, 0, marker) < 0)) { Py_DECREF(marker); Py_DECREF(fromlist); return NULL; } #endif module = PyImport_ImportModuleLevelObject(__pyx_n_s_asyncio_coroutines, NULL, NULL, fromlist, 0); Py_DECREF(fromlist); if (unlikely(!module)) goto ignore; op->func_is_coroutine = __Pyx_PyObject_GetAttrStr(module, marker); Py_DECREF(module); if (likely(op->func_is_coroutine)) { return __Pyx_NewRef(op->func_is_coroutine); } ignore: PyErr_Clear(); } #endif op->func_is_coroutine = __Pyx_PyBool_FromLong(is_coroutine); return __Pyx_NewRef(op->func_is_coroutine); } #if CYTHON_COMPILING_IN_LIMITED_API static PyObject * __Pyx_CyFunction_get_module(__pyx_CyFunctionObject *op, void *context) { CYTHON_UNUSED_VAR(context); return PyObject_GetAttrString(op->func, "__module__"); } static int __Pyx_CyFunction_set_module(__pyx_CyFunctionObject *op, PyObject* value, void *context) { CYTHON_UNUSED_VAR(context); return PyObject_SetAttrString(op->func, "__module__", value); } #endif static PyGetSetDef __pyx_CyFunction_getsets[] = { {(char *) "func_doc", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0}, {(char *) "__doc__", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0}, {(char *) "func_name", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0}, {(char *) "__name__", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0}, {(char *) "__qualname__", (getter)__Pyx_CyFunction_get_qualname, (setter)__Pyx_CyFunction_set_qualname, 0, 0}, {(char *) "func_dict", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0}, {(char *) "__dict__", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0}, {(char *) "func_globals", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0}, {(char *) "__globals__", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0}, {(char *) "func_closure", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0}, {(char *) "__closure__", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0}, {(char *) "func_code", (getter)__Pyx_CyFunction_get_code, 0, 0, 0}, {(char *) "__code__", (getter)__Pyx_CyFunction_get_code, 0, 0, 0}, {(char *) "func_defaults", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0}, {(char *) "__defaults__", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0}, {(char *) "__kwdefaults__", (getter)__Pyx_CyFunction_get_kwdefaults, (setter)__Pyx_CyFunction_set_kwdefaults, 0, 0}, {(char *) "__annotations__", (getter)__Pyx_CyFunction_get_annotations, (setter)__Pyx_CyFunction_set_annotations, 0, 0}, {(char *) "_is_coroutine", (getter)__Pyx_CyFunction_get_is_coroutine, 0, 0, 0}, #if CYTHON_COMPILING_IN_LIMITED_API {"__module__", (getter)__Pyx_CyFunction_get_module, (setter)__Pyx_CyFunction_set_module, 0, 0}, #endif {0, 0, 0, 0, 0} }; static PyMemberDef __pyx_CyFunction_members[] = { #if !CYTHON_COMPILING_IN_LIMITED_API {(char *) "__module__", T_OBJECT, offsetof(PyCFunctionObject, m_module), 0, 0}, #endif #if CYTHON_USE_TYPE_SPECS {(char *) "__dictoffset__", T_PYSSIZET, offsetof(__pyx_CyFunctionObject, func_dict), READONLY, 0}, #if CYTHON_METH_FASTCALL #if CYTHON_BACKPORT_VECTORCALL {(char *) "__vectorcalloffset__", T_PYSSIZET, offsetof(__pyx_CyFunctionObject, func_vectorcall), READONLY, 0}, #else #if !CYTHON_COMPILING_IN_LIMITED_API {(char *) "__vectorcalloffset__", T_PYSSIZET, offsetof(PyCFunctionObject, vectorcall), READONLY, 0}, #endif #endif #endif #if PY_VERSION_HEX < 0x030500A0 || CYTHON_COMPILING_IN_LIMITED_API {(char *) "__weaklistoffset__", T_PYSSIZET, offsetof(__pyx_CyFunctionObject, func_weakreflist), READONLY, 0}, #else {(char *) "__weaklistoffset__", T_PYSSIZET, offsetof(PyCFunctionObject, m_weakreflist), READONLY, 0}, #endif #endif {0, 0, 0, 0, 0} }; static PyObject * __Pyx_CyFunction_reduce(__pyx_CyFunctionObject *m, PyObject *args) { CYTHON_UNUSED_VAR(args); #if PY_MAJOR_VERSION >= 3 Py_INCREF(m->func_qualname); return m->func_qualname; #else return PyString_FromString(((PyCFunctionObject*)m)->m_ml->ml_name); #endif } static PyMethodDef __pyx_CyFunction_methods[] = { {"__reduce__", (PyCFunction)__Pyx_CyFunction_reduce, METH_VARARGS, 0}, {0, 0, 0, 0} }; #if PY_VERSION_HEX < 0x030500A0 || CYTHON_COMPILING_IN_LIMITED_API #define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func_weakreflist) #else #define __Pyx_CyFunction_weakreflist(cyfunc) (((PyCFunctionObject*)cyfunc)->m_weakreflist) #endif static PyObject *__Pyx_CyFunction_Init(__pyx_CyFunctionObject *op, PyMethodDef *ml, int flags, PyObject* qualname, PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) { #if !CYTHON_COMPILING_IN_LIMITED_API PyCFunctionObject *cf = (PyCFunctionObject*) op; #endif if (unlikely(op == NULL)) return NULL; #if CYTHON_COMPILING_IN_LIMITED_API op->func = PyCFunction_NewEx(ml, (PyObject*)op, module); if (unlikely(!op->func)) return NULL; #endif op->flags = flags; __Pyx_CyFunction_weakreflist(op) = NULL; #if !CYTHON_COMPILING_IN_LIMITED_API cf->m_ml = ml; cf->m_self = (PyObject *) op; #endif Py_XINCREF(closure); op->func_closure = closure; #if !CYTHON_COMPILING_IN_LIMITED_API Py_XINCREF(module); cf->m_module = module; #endif op->func_dict = NULL; op->func_name = NULL; Py_INCREF(qualname); op->func_qualname = qualname; op->func_doc = NULL; #if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API op->func_classobj = NULL; #else ((PyCMethodObject*)op)->mm_class = NULL; #endif op->func_globals = globals; Py_INCREF(op->func_globals); Py_XINCREF(code); op->func_code = code; op->defaults_pyobjects = 0; op->defaults_size = 0; op->defaults = NULL; op->defaults_tuple = NULL; op->defaults_kwdict = NULL; op->defaults_getter = NULL; op->func_annotations = NULL; op->func_is_coroutine = NULL; #if CYTHON_METH_FASTCALL switch (ml->ml_flags & (METH_VARARGS | METH_FASTCALL | METH_NOARGS | METH_O | METH_KEYWORDS | METH_METHOD)) { case METH_NOARGS: __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_NOARGS; break; case METH_O: __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_O; break; case METH_METHOD | METH_FASTCALL | METH_KEYWORDS: __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD; break; case METH_FASTCALL | METH_KEYWORDS: __Pyx_CyFunction_func_vectorcall(op) = __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS; break; case METH_VARARGS | METH_KEYWORDS: __Pyx_CyFunction_func_vectorcall(op) = NULL; break; default: PyErr_SetString(PyExc_SystemError, "Bad call flags for CyFunction"); Py_DECREF(op); return NULL; } #endif return (PyObject *) op; } static int __Pyx_CyFunction_clear(__pyx_CyFunctionObject *m) { Py_CLEAR(m->func_closure); #if CYTHON_COMPILING_IN_LIMITED_API Py_CLEAR(m->func); #else Py_CLEAR(((PyCFunctionObject*)m)->m_module); #endif Py_CLEAR(m->func_dict); Py_CLEAR(m->func_name); Py_CLEAR(m->func_qualname); Py_CLEAR(m->func_doc); Py_CLEAR(m->func_globals); Py_CLEAR(m->func_code); #if !CYTHON_COMPILING_IN_LIMITED_API #if PY_VERSION_HEX < 0x030900B1 Py_CLEAR(__Pyx_CyFunction_GetClassObj(m)); #else { PyObject *cls = (PyObject*) ((PyCMethodObject *) (m))->mm_class; ((PyCMethodObject *) (m))->mm_class = NULL; Py_XDECREF(cls); } #endif #endif Py_CLEAR(m->defaults_tuple); Py_CLEAR(m->defaults_kwdict); Py_CLEAR(m->func_annotations); Py_CLEAR(m->func_is_coroutine); if (m->defaults) { PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m); int i; for (i = 0; i < m->defaults_pyobjects; i++) Py_XDECREF(pydefaults[i]); PyObject_Free(m->defaults); m->defaults = NULL; } return 0; } static void __Pyx__CyFunction_dealloc(__pyx_CyFunctionObject *m) { if (__Pyx_CyFunction_weakreflist(m) != NULL) PyObject_ClearWeakRefs((PyObject *) m); __Pyx_CyFunction_clear(m); __Pyx_PyHeapTypeObject_GC_Del(m); } static void __Pyx_CyFunction_dealloc(__pyx_CyFunctionObject *m) { PyObject_GC_UnTrack(m); __Pyx__CyFunction_dealloc(m); } static int __Pyx_CyFunction_traverse(__pyx_CyFunctionObject *m, visitproc visit, void *arg) { Py_VISIT(m->func_closure); #if CYTHON_COMPILING_IN_LIMITED_API Py_VISIT(m->func); #else Py_VISIT(((PyCFunctionObject*)m)->m_module); #endif Py_VISIT(m->func_dict); Py_VISIT(m->func_name); Py_VISIT(m->func_qualname); Py_VISIT(m->func_doc); Py_VISIT(m->func_globals); Py_VISIT(m->func_code); #if !CYTHON_COMPILING_IN_LIMITED_API Py_VISIT(__Pyx_CyFunction_GetClassObj(m)); #endif Py_VISIT(m->defaults_tuple); Py_VISIT(m->defaults_kwdict); Py_VISIT(m->func_is_coroutine); if (m->defaults) { PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m); int i; for (i = 0; i < m->defaults_pyobjects; i++) Py_VISIT(pydefaults[i]); } return 0; } static PyObject* __Pyx_CyFunction_repr(__pyx_CyFunctionObject *op) { #if PY_MAJOR_VERSION >= 3 return PyUnicode_FromFormat("<cyfunction %U at %p>", op->func_qualname, (void *)op); #else return PyString_FromFormat("<cyfunction %s at %p>", PyString_AsString(op->func_qualname), (void *)op); #endif } static PyObject * __Pyx_CyFunction_CallMethod(PyObject *func, PyObject *self, PyObject *arg, PyObject *kw) { #if CYTHON_COMPILING_IN_LIMITED_API PyObject *f = ((__pyx_CyFunctionObject*)func)->func; PyObject *py_name = NULL; PyCFunction meth; int flags; meth = PyCFunction_GetFunction(f); if (unlikely(!meth)) return NULL; flags = PyCFunction_GetFlags(f); if (unlikely(flags < 0)) return NULL; #else PyCFunctionObject* f = (PyCFunctionObject*)func; PyCFunction meth = f->m_ml->ml_meth; int flags = f->m_ml->ml_flags; #endif Py_ssize_t size; switch (flags & (METH_VARARGS | METH_KEYWORDS | METH_NOARGS | METH_O)) { case METH_VARARGS: if (likely(kw == NULL || PyDict_Size(kw) == 0)) return (*meth)(self, arg); break; case METH_VARARGS | METH_KEYWORDS: return (*(PyCFunctionWithKeywords)(void*)meth)(self, arg, kw); case METH_NOARGS: if (likely(kw == NULL || PyDict_Size(kw) == 0)) { #if CYTHON_ASSUME_SAFE_MACROS size = PyTuple_GET_SIZE(arg); #else size = PyTuple_Size(arg); if (unlikely(size < 0)) return NULL; #endif if (likely(size == 0)) return (*meth)(self, NULL); #if CYTHON_COMPILING_IN_LIMITED_API py_name = __Pyx_CyFunction_get_name((__pyx_CyFunctionObject*)func, NULL); if (!py_name) return NULL; PyErr_Format(PyExc_TypeError, "%.200S() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)", py_name, size); Py_DECREF(py_name); #else PyErr_Format(PyExc_TypeError, "%.200s() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)", f->m_ml->ml_name, size); #endif return NULL; } break; case METH_O: if (likely(kw == NULL || PyDict_Size(kw) == 0)) { #if CYTHON_ASSUME_SAFE_MACROS size = PyTuple_GET_SIZE(arg); #else size = PyTuple_Size(arg); if (unlikely(size < 0)) return NULL; #endif if (likely(size == 1)) { PyObject *result, *arg0; #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS arg0 = PyTuple_GET_ITEM(arg, 0); #else arg0 = __Pyx_PySequence_ITEM(arg, 0); if (unlikely(!arg0)) return NULL; #endif result = (*meth)(self, arg0); #if !(CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS) Py_DECREF(arg0); #endif return result; } #if CYTHON_COMPILING_IN_LIMITED_API py_name = __Pyx_CyFunction_get_name((__pyx_CyFunctionObject*)func, NULL); if (!py_name) return NULL; PyErr_Format(PyExc_TypeError, "%.200S() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)", py_name, size); Py_DECREF(py_name); #else PyErr_Format(PyExc_TypeError, "%.200s() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)", f->m_ml->ml_name, size); #endif return NULL; } break; default: PyErr_SetString(PyExc_SystemError, "Bad call flags for CyFunction"); return NULL; } #if CYTHON_COMPILING_IN_LIMITED_API py_name = __Pyx_CyFunction_get_name((__pyx_CyFunctionObject*)func, NULL); if (!py_name) return NULL; PyErr_Format(PyExc_TypeError, "%.200S() takes no keyword arguments", py_name); Py_DECREF(py_name); #else PyErr_Format(PyExc_TypeError, "%.200s() takes no keyword arguments", f->m_ml->ml_name); #endif return NULL; } static CYTHON_INLINE PyObject *__Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) { PyObject *self, *result; #if CYTHON_COMPILING_IN_LIMITED_API self = PyCFunction_GetSelf(((__pyx_CyFunctionObject*)func)->func); if (unlikely(!self) && PyErr_Occurred()) return NULL; #else self = ((PyCFunctionObject*)func)->m_self; #endif result = __Pyx_CyFunction_CallMethod(func, self, arg, kw); return result; } static PyObject *__Pyx_CyFunction_CallAsMethod(PyObject *func, PyObject *args, PyObject *kw) { PyObject *result; __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *) func; #if CYTHON_METH_FASTCALL __pyx_vectorcallfunc vc = __Pyx_CyFunction_func_vectorcall(cyfunc); if (vc) { #if CYTHON_ASSUME_SAFE_MACROS return __Pyx_PyVectorcall_FastCallDict(func, vc, &PyTuple_GET_ITEM(args, 0), (size_t)PyTuple_GET_SIZE(args), kw); #else (void) &__Pyx_PyVectorcall_FastCallDict; return PyVectorcall_Call(func, args, kw); #endif } #endif if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) { Py_ssize_t argc; PyObject *new_args; PyObject *self; #if CYTHON_ASSUME_SAFE_MACROS argc = PyTuple_GET_SIZE(args); #else argc = PyTuple_Size(args); if (unlikely(!argc) < 0) return NULL; #endif new_args = PyTuple_GetSlice(args, 1, argc); if (unlikely(!new_args)) return NULL; self = PyTuple_GetItem(args, 0); if (unlikely(!self)) { Py_DECREF(new_args); #if PY_MAJOR_VERSION > 2 PyErr_Format(PyExc_TypeError, "unbound method %.200S() needs an argument", cyfunc->func_qualname); #else PyErr_SetString(PyExc_TypeError, "unbound method needs an argument"); #endif return NULL; } result = __Pyx_CyFunction_CallMethod(func, self, new_args, kw); Py_DECREF(new_args); } else { result = __Pyx_CyFunction_Call(func, args, kw); } return result; } #if CYTHON_METH_FASTCALL static CYTHON_INLINE int __Pyx_CyFunction_Vectorcall_CheckArgs(__pyx_CyFunctionObject *cyfunc, Py_ssize_t nargs, PyObject *kwnames) { int ret = 0; if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) { if (unlikely(nargs < 1)) { PyErr_Format(PyExc_TypeError, "%.200s() needs an argument", ((PyCFunctionObject*)cyfunc)->m_ml->ml_name); return -1; } ret = 1; } if (unlikely(kwnames) && unlikely(PyTuple_GET_SIZE(kwnames))) { PyErr_Format(PyExc_TypeError, "%.200s() takes no keyword arguments", ((PyCFunctionObject*)cyfunc)->m_ml->ml_name); return -1; } return ret; } static PyObject * __Pyx_CyFunction_Vectorcall_NOARGS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) { __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml; #if CYTHON_BACKPORT_VECTORCALL Py_ssize_t nargs = (Py_ssize_t)nargsf; #else Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); #endif PyObject *self; switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, kwnames)) { case 1: self = args[0]; args += 1; nargs -= 1; break; case 0: self = ((PyCFunctionObject*)cyfunc)->m_self; break; default: return NULL; } if (unlikely(nargs != 0)) { PyErr_Format(PyExc_TypeError, "%.200s() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)", def->ml_name, nargs); return NULL; } return def->ml_meth(self, NULL); } static PyObject * __Pyx_CyFunction_Vectorcall_O(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) { __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml; #if CYTHON_BACKPORT_VECTORCALL Py_ssize_t nargs = (Py_ssize_t)nargsf; #else Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); #endif PyObject *self; switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, kwnames)) { case 1: self = args[0]; args += 1; nargs -= 1; break; case 0: self = ((PyCFunctionObject*)cyfunc)->m_self; break; default: return NULL; } if (unlikely(nargs != 1)) { PyErr_Format(PyExc_TypeError, "%.200s() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)", def->ml_name, nargs); return NULL; } return def->ml_meth(self, args[0]); } static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) { __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml; #if CYTHON_BACKPORT_VECTORCALL Py_ssize_t nargs = (Py_ssize_t)nargsf; #else Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); #endif PyObject *self; switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, NULL)) { case 1: self = args[0]; args += 1; nargs -= 1; break; case 0: self = ((PyCFunctionObject*)cyfunc)->m_self; break; default: return NULL; } return ((__Pyx_PyCFunctionFastWithKeywords)(void(*)(void))def->ml_meth)(self, args, nargs, kwnames); } static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames) { __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *)func; PyMethodDef* def = ((PyCFunctionObject*)cyfunc)->m_ml; PyTypeObject *cls = (PyTypeObject *) __Pyx_CyFunction_GetClassObj(cyfunc); #if CYTHON_BACKPORT_VECTORCALL Py_ssize_t nargs = (Py_ssize_t)nargsf; #else Py_ssize_t nargs = PyVectorcall_NARGS(nargsf); #endif PyObject *self; switch (__Pyx_CyFunction_Vectorcall_CheckArgs(cyfunc, nargs, NULL)) { case 1: self = args[0]; args += 1; nargs -= 1; break; case 0: self = ((PyCFunctionObject*)cyfunc)->m_self; break; default: return NULL; } return ((__Pyx_PyCMethod)(void(*)(void))def->ml_meth)(self, cls, args, (size_t)nargs, kwnames); } #endif #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_CyFunctionType_slots[] = { {Py_tp_dealloc, (void *)__Pyx_CyFunction_dealloc}, {Py_tp_repr, (void *)__Pyx_CyFunction_repr}, {Py_tp_call, (void *)__Pyx_CyFunction_CallAsMethod}, {Py_tp_traverse, (void *)__Pyx_CyFunction_traverse}, {Py_tp_clear, (void *)__Pyx_CyFunction_clear}, {Py_tp_methods, (void *)__pyx_CyFunction_methods}, {Py_tp_members, (void *)__pyx_CyFunction_members}, {Py_tp_getset, (void *)__pyx_CyFunction_getsets}, {Py_tp_descr_get, (void *)__Pyx_PyMethod_New}, {0, 0}, }; static PyType_Spec __pyx_CyFunctionType_spec = { __PYX_TYPE_MODULE_PREFIX "cython_function_or_method", sizeof(__pyx_CyFunctionObject), 0, #ifdef Py_TPFLAGS_METHOD_DESCRIPTOR Py_TPFLAGS_METHOD_DESCRIPTOR | #endif #if (defined(_Py_TPFLAGS_HAVE_VECTORCALL) && CYTHON_METH_FASTCALL) _Py_TPFLAGS_HAVE_VECTORCALL | #endif Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC | Py_TPFLAGS_BASETYPE, __pyx_CyFunctionType_slots }; #else static PyTypeObject __pyx_CyFunctionType_type = { PyVarObject_HEAD_INIT(0, 0) __PYX_TYPE_MODULE_PREFIX "cython_function_or_method", sizeof(__pyx_CyFunctionObject), 0, (destructor) __Pyx_CyFunction_dealloc, #if !CYTHON_METH_FASTCALL 0, #elif CYTHON_BACKPORT_VECTORCALL (printfunc)offsetof(__pyx_CyFunctionObject, func_vectorcall), #else offsetof(PyCFunctionObject, vectorcall), #endif 0, 0, #if PY_MAJOR_VERSION < 3 0, #else 0, #endif (reprfunc) __Pyx_CyFunction_repr, 0, 0, 0, 0, __Pyx_CyFunction_CallAsMethod, 0, 0, 0, 0, #ifdef Py_TPFLAGS_METHOD_DESCRIPTOR Py_TPFLAGS_METHOD_DESCRIPTOR | #endif #if defined(_Py_TPFLAGS_HAVE_VECTORCALL) && CYTHON_METH_FASTCALL _Py_TPFLAGS_HAVE_VECTORCALL | #endif Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC | Py_TPFLAGS_BASETYPE, 0, (traverseproc) __Pyx_CyFunction_traverse, (inquiry) __Pyx_CyFunction_clear, 0, #if PY_VERSION_HEX < 0x030500A0 offsetof(__pyx_CyFunctionObject, func_weakreflist), #else offsetof(PyCFunctionObject, m_weakreflist), #endif 0, 0, __pyx_CyFunction_methods, __pyx_CyFunction_members, __pyx_CyFunction_getsets, 0, 0, __Pyx_PyMethod_New, 0, offsetof(__pyx_CyFunctionObject, func_dict), 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, #if PY_VERSION_HEX >= 0x030400a1 0, #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, #endif #if __PYX_NEED_TP_PRINT_SLOT 0, #endif #if PY_VERSION_HEX >= 0x030C0000 0, #endif #if PY_VERSION_HEX >= 0x030d00A4 0, #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, #endif }; #endif static int __pyx_CyFunction_init(PyObject *module) { #if CYTHON_USE_TYPE_SPECS __pyx_CyFunctionType = __Pyx_FetchCommonTypeFromSpec(module, &__pyx_CyFunctionType_spec, NULL); #else CYTHON_UNUSED_VAR(module); __pyx_CyFunctionType = __Pyx_FetchCommonType(&__pyx_CyFunctionType_type); #endif if (unlikely(__pyx_CyFunctionType == NULL)) { return -1; } return 0; } static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t size, int pyobjects) { __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; m->defaults = PyObject_Malloc(size); if (unlikely(!m->defaults)) return PyErr_NoMemory(); memset(m->defaults, 0, size); m->defaults_pyobjects = pyobjects; m->defaults_size = size; return m->defaults; } static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *func, PyObject *tuple) { __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; m->defaults_tuple = tuple; Py_INCREF(tuple); } static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *func, PyObject *dict) { __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; m->defaults_kwdict = dict; Py_INCREF(dict); } static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *func, PyObject *dict) { __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; m->func_annotations = dict; Py_INCREF(dict); } /* CythonFunction */ static PyObject *__Pyx_CyFunction_New(PyMethodDef *ml, int flags, PyObject* qualname, PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) { PyObject *op = __Pyx_CyFunction_Init( PyObject_GC_New(__pyx_CyFunctionObject, __pyx_CyFunctionType), ml, flags, qualname, closure, module, globals, code ); if (likely(op)) { PyObject_GC_Track(op); } return op; } /* CLineInTraceback */ #ifndef CYTHON_CLINE_IN_TRACEBACK static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line) { PyObject *use_cline; PyObject *ptype, *pvalue, *ptraceback; #if CYTHON_COMPILING_IN_CPYTHON PyObject **cython_runtime_dict; #endif CYTHON_MAYBE_UNUSED_VAR(tstate); if (unlikely(!__pyx_cython_runtime)) { return c_line; } __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback); #if CYTHON_COMPILING_IN_CPYTHON cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime); if (likely(cython_runtime_dict)) { __PYX_PY_DICT_LOOKUP_IF_MODIFIED( use_cline, *cython_runtime_dict, __Pyx_PyDict_GetItemStr(*cython_runtime_dict, __pyx_n_s_cline_in_traceback)) } else #endif { PyObject *use_cline_obj = __Pyx_PyObject_GetAttrStrNoError(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback); if (use_cline_obj) { use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True; Py_DECREF(use_cline_obj); } else { PyErr_Clear(); use_cline = NULL; } } if (!use_cline) { c_line = 0; (void) PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False); } else if (use_cline == Py_False || (use_cline != Py_True && PyObject_Not(use_cline) != 0)) { c_line = 0; } __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback); return c_line; } #endif /* CodeObjectCache */ #if !CYTHON_COMPILING_IN_LIMITED_API static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { int start = 0, mid = 0, end = count - 1; if (end >= 0 && code_line > entries[end].code_line) { return count; } while (start < end) { mid = start + (end - start) / 2; if (code_line < entries[mid].code_line) { end = mid; } else if (code_line > entries[mid].code_line) { start = mid + 1; } else { return mid; } } if (code_line <= entries[mid].code_line) { return mid; } else { return mid + 1; } } static PyCodeObject *__pyx_find_code_object(int code_line) { PyCodeObject* code_object; int pos; if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) { return NULL; } pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) { return NULL; } code_object = __pyx_code_cache.entries[pos].code_object; Py_INCREF(code_object); return code_object; } static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { int pos, i; __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries; if (unlikely(!code_line)) { return; } if (unlikely(!entries)) { entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry)); if (likely(entries)) { __pyx_code_cache.entries = entries; __pyx_code_cache.max_count = 64; __pyx_code_cache.count = 1; entries[0].code_line = code_line; entries[0].code_object = code_object; Py_INCREF(code_object); } return; } pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line); if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) { PyCodeObject* tmp = entries[pos].code_object; entries[pos].code_object = code_object; Py_DECREF(tmp); return; } if (__pyx_code_cache.count == __pyx_code_cache.max_count) { int new_max = __pyx_code_cache.max_count + 64; entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc( __pyx_code_cache.entries, ((size_t)new_max) * sizeof(__Pyx_CodeObjectCacheEntry)); if (unlikely(!entries)) { return; } __pyx_code_cache.entries = entries; __pyx_code_cache.max_count = new_max; } for (i=__pyx_code_cache.count; i>pos; i--) { entries[i] = entries[i-1]; } entries[pos].code_line = code_line; entries[pos].code_object = code_object; __pyx_code_cache.count++; Py_INCREF(code_object); } #endif /* AddTraceback */ #include "compile.h" #include "frameobject.h" #include "traceback.h" #if PY_VERSION_HEX >= 0x030b00a6 && !CYTHON_COMPILING_IN_LIMITED_API #ifndef Py_BUILD_CORE #define Py_BUILD_CORE 1 #endif #include "internal/pycore_frame.h" #endif #if CYTHON_COMPILING_IN_LIMITED_API static PyObject *__Pyx_PyCode_Replace_For_AddTraceback(PyObject *code, PyObject *scratch_dict, PyObject *firstlineno, PyObject *name) { PyObject *replace = NULL; if (unlikely(PyDict_SetItemString(scratch_dict, "co_firstlineno", firstlineno))) return NULL; if (unlikely(PyDict_SetItemString(scratch_dict, "co_name", name))) return NULL; replace = PyObject_GetAttrString(code, "replace"); if (likely(replace)) { PyObject *result; result = PyObject_Call(replace, __pyx_empty_tuple, scratch_dict); Py_DECREF(replace); return result; } PyErr_Clear(); #if __PYX_LIMITED_VERSION_HEX < 0x030780000 { PyObject *compiled = NULL, *result = NULL; if (unlikely(PyDict_SetItemString(scratch_dict, "code", code))) return NULL; if (unlikely(PyDict_SetItemString(scratch_dict, "type", (PyObject*)(&PyType_Type)))) return NULL; compiled = Py_CompileString( "out = type(code)(\n" " code.co_argcount, code.co_kwonlyargcount, code.co_nlocals, code.co_stacksize,\n" " code.co_flags, code.co_code, code.co_consts, code.co_names,\n" " code.co_varnames, code.co_filename, co_name, co_firstlineno,\n" " code.co_lnotab)\n", "<dummy>", Py_file_input); if (!compiled) return NULL; result = PyEval_EvalCode(compiled, scratch_dict, scratch_dict); Py_DECREF(compiled); if (!result) PyErr_Print(); Py_DECREF(result); result = PyDict_GetItemString(scratch_dict, "out"); if (result) Py_INCREF(result); return result; } #else return NULL; #endif } static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename) { PyObject *code_object = NULL, *py_py_line = NULL, *py_funcname = NULL, *dict = NULL; PyObject *replace = NULL, *getframe = NULL, *frame = NULL; PyObject *exc_type, *exc_value, *exc_traceback; int success = 0; if (c_line) { (void) __pyx_cfilenm; (void) __Pyx_CLineForTraceback(__Pyx_PyThreadState_Current, c_line); } PyErr_Fetch(&exc_type, &exc_value, &exc_traceback); code_object = Py_CompileString("_getframe()", filename, Py_eval_input); if (unlikely(!code_object)) goto bad; py_py_line = PyLong_FromLong(py_line); if (unlikely(!py_py_line)) goto bad; py_funcname = PyUnicode_FromString(funcname); if (unlikely(!py_funcname)) goto bad; dict = PyDict_New(); if (unlikely(!dict)) goto bad; { PyObject *old_code_object = code_object; code_object = __Pyx_PyCode_Replace_For_AddTraceback(code_object, dict, py_py_line, py_funcname); Py_DECREF(old_code_object); } if (unlikely(!code_object)) goto bad; getframe = PySys_GetObject("_getframe"); if (unlikely(!getframe)) goto bad; if (unlikely(PyDict_SetItemString(dict, "_getframe", getframe))) goto bad; frame = PyEval_EvalCode(code_object, dict, dict); if (unlikely(!frame) || frame == Py_None) goto bad; success = 1; bad: PyErr_Restore(exc_type, exc_value, exc_traceback); Py_XDECREF(code_object); Py_XDECREF(py_py_line); Py_XDECREF(py_funcname); Py_XDECREF(dict); Py_XDECREF(replace); if (success) { PyTraceBack_Here( (struct _frame*)frame); } Py_XDECREF(frame); } #else static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = NULL; PyObject *py_funcname = NULL; #if PY_MAJOR_VERSION < 3 PyObject *py_srcfile = NULL; py_srcfile = PyString_FromString(filename); if (!py_srcfile) goto bad; #endif if (c_line) { #if PY_MAJOR_VERSION < 3 py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); if (!py_funcname) goto bad; #else py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line); if (!py_funcname) goto bad; funcname = PyUnicode_AsUTF8(py_funcname); if (!funcname) goto bad; #endif } else { #if PY_MAJOR_VERSION < 3 py_funcname = PyString_FromString(funcname); if (!py_funcname) goto bad; #endif } #if PY_MAJOR_VERSION < 3 py_code = __Pyx_PyCode_New( 0, 0, 0, 0, 0, 0, __pyx_empty_bytes, /*PyObject *code,*/ __pyx_empty_tuple, /*PyObject *consts,*/ __pyx_empty_tuple, /*PyObject *names,*/ __pyx_empty_tuple, /*PyObject *varnames,*/ __pyx_empty_tuple, /*PyObject *freevars,*/ __pyx_empty_tuple, /*PyObject *cellvars,*/ py_srcfile, /*PyObject *filename,*/ py_funcname, /*PyObject *name,*/ py_line, __pyx_empty_bytes /*PyObject *lnotab*/ ); Py_DECREF(py_srcfile); #else py_code = PyCode_NewEmpty(filename, funcname, py_line); #endif Py_XDECREF(py_funcname); return py_code; bad: Py_XDECREF(py_funcname); #if PY_MAJOR_VERSION < 3 Py_XDECREF(py_srcfile); #endif return NULL; } static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyFrameObject *py_frame = 0; PyThreadState *tstate = __Pyx_PyThreadState_Current; PyObject *ptype, *pvalue, *ptraceback; if (c_line) { c_line = __Pyx_CLineForTraceback(tstate, c_line); } py_code = __pyx_find_code_object(c_line ? -c_line : py_line); if (!py_code) { __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback); py_code = __Pyx_CreateCodeObjectForTraceback( funcname, c_line, py_line, filename); if (!py_code) { /* If the code object creation fails, then we should clear the fetched exception references and propagate the new exception */ Py_XDECREF(ptype); Py_XDECREF(pvalue); Py_XDECREF(ptraceback); goto bad; } __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback); __pyx_insert_code_object(c_line ? -c_line : py_line, py_code); } py_frame = PyFrame_New( tstate, /*PyThreadState *tstate,*/ py_code, /*PyCodeObject *code,*/ __pyx_d, /*PyObject *globals,*/ 0 /*PyObject *locals*/ ); if (!py_frame) goto bad; __Pyx_PyFrame_SetLineNumber(py_frame, py_line); PyTraceBack_Here(py_frame); bad: Py_XDECREF(py_code); Py_XDECREF(py_frame); } #endif /* CIntFromPyVerify */ #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) #define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) #define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\ {\ func_type value = func_value;\ if (sizeof(target_type) < sizeof(func_type)) {\ if (unlikely(value != (func_type) (target_type) value)) {\ func_type zero = 0;\ if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\ return (target_type) -1;\ if (is_unsigned && unlikely(value < zero))\ goto raise_neg_overflow;\ else\ goto raise_overflow;\ }\ }\ return (target_type) value;\ } /* CIntToPy */ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const int neg_one = (int) -1, const_zero = (int) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(int) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(int) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); #ifdef HAVE_LONG_LONG } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) { return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); #endif } } else { if (sizeof(int) <= sizeof(long)) { return PyInt_FromLong((long) value); #ifdef HAVE_LONG_LONG } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) { return PyLong_FromLongLong((PY_LONG_LONG) value); #endif } } { unsigned char *bytes = (unsigned char *)&value; #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 if (is_unsigned) { return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); } else { return PyLong_FromNativeBytes(bytes, sizeof(value), -1); } #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 int one = 1; int little = (int)*(unsigned char *)&one; return _PyLong_FromByteArray(bytes, sizeof(int), little, !is_unsigned); #else int one = 1; int little = (int)*(unsigned char *)&one; PyObject *from_bytes, *result = NULL; PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); if (!from_bytes) return NULL; py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(int)); if (!py_bytes) goto limited_bad; order_str = PyUnicode_FromString(little ? "little" : "big"); if (!order_str) goto limited_bad; arg_tuple = PyTuple_Pack(2, py_bytes, order_str); if (!arg_tuple) goto limited_bad; if (!is_unsigned) { kwds = PyDict_New(); if (!kwds) goto limited_bad; if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; } result = PyObject_Call(from_bytes, arg_tuple, kwds); limited_bad: Py_XDECREF(kwds); Py_XDECREF(arg_tuple); Py_XDECREF(order_str); Py_XDECREF(py_bytes); Py_XDECREF(from_bytes); return result; #endif } } /* CIntFromPy */ static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const int neg_one = (int) -1, const_zero = (int) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if ((sizeof(int) < sizeof(long))) { __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x)) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { goto raise_neg_overflow; } return (int) val; } } #endif if (unlikely(!PyLong_Check(x))) { int val; PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); if (!tmp) return (int) -1; val = __Pyx_PyInt_As_int(tmp); Py_DECREF(tmp); return val; } if (is_unsigned) { #if CYTHON_USE_PYLONG_INTERNALS if (unlikely(__Pyx_PyLong_IsNeg(x))) { goto raise_neg_overflow; } else if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(int, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_DigitCount(x)) { case 2: if ((8 * sizeof(int) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int) >= 2 * PyLong_SHIFT)) { return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); } } break; case 3: if ((8 * sizeof(int) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int) >= 3 * PyLong_SHIFT)) { return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); } } break; case 4: if ((8 * sizeof(int) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int) >= 4 * PyLong_SHIFT)) { return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); } } break; } } #endif #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 if (unlikely(Py_SIZE(x) < 0)) { goto raise_neg_overflow; } #else { int result = PyObject_RichCompareBool(x, Py_False, Py_LT); if (unlikely(result < 0)) return (int) -1; if (unlikely(result == 1)) goto raise_neg_overflow; } #endif if ((sizeof(int) <= sizeof(unsigned long))) { __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x)) #ifdef HAVE_LONG_LONG } else if ((sizeof(int) <= sizeof(unsigned PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) #endif } } else { #if CYTHON_USE_PYLONG_INTERNALS if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(int, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_SignedDigitCount(x)) { case -2: if ((8 * sizeof(int) - 1 > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int) - 1 > 2 * PyLong_SHIFT)) { return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); } } break; case 2: if ((8 * sizeof(int) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int) - 1 > 2 * PyLong_SHIFT)) { return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); } } break; case -3: if ((8 * sizeof(int) - 1 > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int) - 1 > 3 * PyLong_SHIFT)) { return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); } } break; case 3: if ((8 * sizeof(int) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int) - 1 > 3 * PyLong_SHIFT)) { return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); } } break; case -4: if ((8 * sizeof(int) - 1 > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int) - 1 > 4 * PyLong_SHIFT)) { return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); } } break; case 4: if ((8 * sizeof(int) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int) - 1 > 4 * PyLong_SHIFT)) { return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); } } break; } } #endif if ((sizeof(int) <= sizeof(long))) { __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x)) #ifdef HAVE_LONG_LONG } else if ((sizeof(int) <= sizeof(PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x)) #endif } } { int val; int ret = -1; #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API Py_ssize_t bytes_copied = PyLong_AsNativeBytes( x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0)); if (unlikely(bytes_copied == -1)) { } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) { goto raise_overflow; } else { ret = 0; } #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; ret = _PyLong_AsByteArray((PyLongObject *)x, bytes, sizeof(val), is_little, !is_unsigned); #else PyObject *v; PyObject *stepval = NULL, *mask = NULL, *shift = NULL; int bits, remaining_bits, is_negative = 0; int chunk_size = (sizeof(long) < 8) ? 30 : 62; if (likely(PyLong_CheckExact(x))) { v = __Pyx_NewRef(x); } else { v = PyNumber_Long(x); if (unlikely(!v)) return (int) -1; assert(PyLong_CheckExact(v)); } { int result = PyObject_RichCompareBool(v, Py_False, Py_LT); if (unlikely(result < 0)) { Py_DECREF(v); return (int) -1; } is_negative = result == 1; } if (is_unsigned && unlikely(is_negative)) { Py_DECREF(v); goto raise_neg_overflow; } else if (is_negative) { stepval = PyNumber_Invert(v); Py_DECREF(v); if (unlikely(!stepval)) return (int) -1; } else { stepval = v; } v = NULL; val = (int) 0; mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; for (bits = 0; bits < (int) sizeof(int) * 8 - chunk_size; bits += chunk_size) { PyObject *tmp, *digit; long idigit; digit = PyNumber_And(stepval, mask); if (unlikely(!digit)) goto done; idigit = PyLong_AsLong(digit); Py_DECREF(digit); if (unlikely(idigit < 0)) goto done; val |= ((int) idigit) << bits; tmp = PyNumber_Rshift(stepval, shift); if (unlikely(!tmp)) goto done; Py_DECREF(stepval); stepval = tmp; } Py_DECREF(shift); shift = NULL; Py_DECREF(mask); mask = NULL; { long idigit = PyLong_AsLong(stepval); if (unlikely(idigit < 0)) goto done; remaining_bits = ((int) sizeof(int) * 8) - bits - (is_unsigned ? 0 : 1); if (unlikely(idigit >= (1L << remaining_bits))) goto raise_overflow; val |= ((int) idigit) << bits; } if (!is_unsigned) { if (unlikely(val & (((int) 1) << (sizeof(int) * 8 - 1)))) goto raise_overflow; if (is_negative) val = ~val; } ret = 0; done: Py_XDECREF(shift); Py_XDECREF(mask); Py_XDECREF(stepval); #endif if (unlikely(ret)) return (int) -1; return val; } raise_overflow: PyErr_SetString(PyExc_OverflowError, "value too large to convert to int"); return (int) -1; raise_neg_overflow: PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int"); return (int) -1; } /* CIntToPy */ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int32_t(int32_t value) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const int32_t neg_one = (int32_t) -1, const_zero = (int32_t) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(int32_t) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(int32_t) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); #ifdef HAVE_LONG_LONG } else if (sizeof(int32_t) <= sizeof(unsigned PY_LONG_LONG)) { return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); #endif } } else { if (sizeof(int32_t) <= sizeof(long)) { return PyInt_FromLong((long) value); #ifdef HAVE_LONG_LONG } else if (sizeof(int32_t) <= sizeof(PY_LONG_LONG)) { return PyLong_FromLongLong((PY_LONG_LONG) value); #endif } } { unsigned char *bytes = (unsigned char *)&value; #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 if (is_unsigned) { return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); } else { return PyLong_FromNativeBytes(bytes, sizeof(value), -1); } #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 int one = 1; int little = (int)*(unsigned char *)&one; return _PyLong_FromByteArray(bytes, sizeof(int32_t), little, !is_unsigned); #else int one = 1; int little = (int)*(unsigned char *)&one; PyObject *from_bytes, *result = NULL; PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); if (!from_bytes) return NULL; py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(int32_t)); if (!py_bytes) goto limited_bad; order_str = PyUnicode_FromString(little ? "little" : "big"); if (!order_str) goto limited_bad; arg_tuple = PyTuple_Pack(2, py_bytes, order_str); if (!arg_tuple) goto limited_bad; if (!is_unsigned) { kwds = PyDict_New(); if (!kwds) goto limited_bad; if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; } result = PyObject_Call(from_bytes, arg_tuple, kwds); limited_bad: Py_XDECREF(kwds); Py_XDECREF(arg_tuple); Py_XDECREF(order_str); Py_XDECREF(py_bytes); Py_XDECREF(from_bytes); return result; #endif } } /* CIntFromPy */ static CYTHON_INLINE int32_t __Pyx_PyInt_As_int32_t(PyObject *x) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const int32_t neg_one = (int32_t) -1, const_zero = (int32_t) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if ((sizeof(int32_t) < sizeof(long))) { __PYX_VERIFY_RETURN_INT(int32_t, long, PyInt_AS_LONG(x)) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { goto raise_neg_overflow; } return (int32_t) val; } } #endif if (unlikely(!PyLong_Check(x))) { int32_t val; PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); if (!tmp) return (int32_t) -1; val = __Pyx_PyInt_As_int32_t(tmp); Py_DECREF(tmp); return val; } if (is_unsigned) { #if CYTHON_USE_PYLONG_INTERNALS if (unlikely(__Pyx_PyLong_IsNeg(x))) { goto raise_neg_overflow; } else if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(int32_t, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_DigitCount(x)) { case 2: if ((8 * sizeof(int32_t) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int32_t) >= 2 * PyLong_SHIFT)) { return (int32_t) (((((int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0])); } } break; case 3: if ((8 * sizeof(int32_t) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int32_t) >= 3 * PyLong_SHIFT)) { return (int32_t) (((((((int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0])); } } break; case 4: if ((8 * sizeof(int32_t) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int32_t) >= 4 * PyLong_SHIFT)) { return (int32_t) (((((((((int32_t)digits[3]) << PyLong_SHIFT) | (int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0])); } } break; } } #endif #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 if (unlikely(Py_SIZE(x) < 0)) { goto raise_neg_overflow; } #else { int result = PyObject_RichCompareBool(x, Py_False, Py_LT); if (unlikely(result < 0)) return (int32_t) -1; if (unlikely(result == 1)) goto raise_neg_overflow; } #endif if ((sizeof(int32_t) <= sizeof(unsigned long))) { __PYX_VERIFY_RETURN_INT_EXC(int32_t, unsigned long, PyLong_AsUnsignedLong(x)) #ifdef HAVE_LONG_LONG } else if ((sizeof(int32_t) <= sizeof(unsigned PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(int32_t, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) #endif } } else { #if CYTHON_USE_PYLONG_INTERNALS if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(int32_t, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_SignedDigitCount(x)) { case -2: if ((8 * sizeof(int32_t) - 1 > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int32_t, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int32_t) - 1 > 2 * PyLong_SHIFT)) { return (int32_t) (((int32_t)-1)*(((((int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0]))); } } break; case 2: if ((8 * sizeof(int32_t) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int32_t) - 1 > 2 * PyLong_SHIFT)) { return (int32_t) ((((((int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0]))); } } break; case -3: if ((8 * sizeof(int32_t) - 1 > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int32_t, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int32_t) - 1 > 3 * PyLong_SHIFT)) { return (int32_t) (((int32_t)-1)*(((((((int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0]))); } } break; case 3: if ((8 * sizeof(int32_t) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int32_t) - 1 > 3 * PyLong_SHIFT)) { return (int32_t) ((((((((int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0]))); } } break; case -4: if ((8 * sizeof(int32_t) - 1 > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int32_t, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int32_t) - 1 > 4 * PyLong_SHIFT)) { return (int32_t) (((int32_t)-1)*(((((((((int32_t)digits[3]) << PyLong_SHIFT) | (int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0]))); } } break; case 4: if ((8 * sizeof(int32_t) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int32_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int32_t) - 1 > 4 * PyLong_SHIFT)) { return (int32_t) ((((((((((int32_t)digits[3]) << PyLong_SHIFT) | (int32_t)digits[2]) << PyLong_SHIFT) | (int32_t)digits[1]) << PyLong_SHIFT) | (int32_t)digits[0]))); } } break; } } #endif if ((sizeof(int32_t) <= sizeof(long))) { __PYX_VERIFY_RETURN_INT_EXC(int32_t, long, PyLong_AsLong(x)) #ifdef HAVE_LONG_LONG } else if ((sizeof(int32_t) <= sizeof(PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(int32_t, PY_LONG_LONG, PyLong_AsLongLong(x)) #endif } } { int32_t val; int ret = -1; #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API Py_ssize_t bytes_copied = PyLong_AsNativeBytes( x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0)); if (unlikely(bytes_copied == -1)) { } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) { goto raise_overflow; } else { ret = 0; } #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; ret = _PyLong_AsByteArray((PyLongObject *)x, bytes, sizeof(val), is_little, !is_unsigned); #else PyObject *v; PyObject *stepval = NULL, *mask = NULL, *shift = NULL; int bits, remaining_bits, is_negative = 0; int chunk_size = (sizeof(long) < 8) ? 30 : 62; if (likely(PyLong_CheckExact(x))) { v = __Pyx_NewRef(x); } else { v = PyNumber_Long(x); if (unlikely(!v)) return (int32_t) -1; assert(PyLong_CheckExact(v)); } { int result = PyObject_RichCompareBool(v, Py_False, Py_LT); if (unlikely(result < 0)) { Py_DECREF(v); return (int32_t) -1; } is_negative = result == 1; } if (is_unsigned && unlikely(is_negative)) { Py_DECREF(v); goto raise_neg_overflow; } else if (is_negative) { stepval = PyNumber_Invert(v); Py_DECREF(v); if (unlikely(!stepval)) return (int32_t) -1; } else { stepval = v; } v = NULL; val = (int32_t) 0; mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; for (bits = 0; bits < (int) sizeof(int32_t) * 8 - chunk_size; bits += chunk_size) { PyObject *tmp, *digit; long idigit; digit = PyNumber_And(stepval, mask); if (unlikely(!digit)) goto done; idigit = PyLong_AsLong(digit); Py_DECREF(digit); if (unlikely(idigit < 0)) goto done; val |= ((int32_t) idigit) << bits; tmp = PyNumber_Rshift(stepval, shift); if (unlikely(!tmp)) goto done; Py_DECREF(stepval); stepval = tmp; } Py_DECREF(shift); shift = NULL; Py_DECREF(mask); mask = NULL; { long idigit = PyLong_AsLong(stepval); if (unlikely(idigit < 0)) goto done; remaining_bits = ((int) sizeof(int32_t) * 8) - bits - (is_unsigned ? 0 : 1); if (unlikely(idigit >= (1L << remaining_bits))) goto raise_overflow; val |= ((int32_t) idigit) << bits; } if (!is_unsigned) { if (unlikely(val & (((int32_t) 1) << (sizeof(int32_t) * 8 - 1)))) goto raise_overflow; if (is_negative) val = ~val; } ret = 0; done: Py_XDECREF(shift); Py_XDECREF(mask); Py_XDECREF(stepval); #endif if (unlikely(ret)) return (int32_t) -1; return val; } raise_overflow: PyErr_SetString(PyExc_OverflowError, "value too large to convert to int32_t"); return (int32_t) -1; raise_neg_overflow: PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int32_t"); return (int32_t) -1; } /* CIntFromPy */ static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const long neg_one = (long) -1, const_zero = (long) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if ((sizeof(long) < sizeof(long))) { __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x)) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { goto raise_neg_overflow; } return (long) val; } } #endif if (unlikely(!PyLong_Check(x))) { long val; PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); if (!tmp) return (long) -1; val = __Pyx_PyInt_As_long(tmp); Py_DECREF(tmp); return val; } if (is_unsigned) { #if CYTHON_USE_PYLONG_INTERNALS if (unlikely(__Pyx_PyLong_IsNeg(x))) { goto raise_neg_overflow; } else if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(long, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_DigitCount(x)) { case 2: if ((8 * sizeof(long) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(long) >= 2 * PyLong_SHIFT)) { return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); } } break; case 3: if ((8 * sizeof(long) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(long) >= 3 * PyLong_SHIFT)) { return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); } } break; case 4: if ((8 * sizeof(long) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(long) >= 4 * PyLong_SHIFT)) { return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); } } break; } } #endif #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 if (unlikely(Py_SIZE(x) < 0)) { goto raise_neg_overflow; } #else { int result = PyObject_RichCompareBool(x, Py_False, Py_LT); if (unlikely(result < 0)) return (long) -1; if (unlikely(result == 1)) goto raise_neg_overflow; } #endif if ((sizeof(long) <= sizeof(unsigned long))) { __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x)) #ifdef HAVE_LONG_LONG } else if ((sizeof(long) <= sizeof(unsigned PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) #endif } } else { #if CYTHON_USE_PYLONG_INTERNALS if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(long, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_SignedDigitCount(x)) { case -2: if ((8 * sizeof(long) - 1 > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(long) - 1 > 2 * PyLong_SHIFT)) { return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); } } break; case 2: if ((8 * sizeof(long) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(long) - 1 > 2 * PyLong_SHIFT)) { return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); } } break; case -3: if ((8 * sizeof(long) - 1 > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(long) - 1 > 3 * PyLong_SHIFT)) { return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); } } break; case 3: if ((8 * sizeof(long) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(long) - 1 > 3 * PyLong_SHIFT)) { return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); } } break; case -4: if ((8 * sizeof(long) - 1 > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(long) - 1 > 4 * PyLong_SHIFT)) { return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); } } break; case 4: if ((8 * sizeof(long) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(long) - 1 > 4 * PyLong_SHIFT)) { return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); } } break; } } #endif if ((sizeof(long) <= sizeof(long))) { __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x)) #ifdef HAVE_LONG_LONG } else if ((sizeof(long) <= sizeof(PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x)) #endif } } { long val; int ret = -1; #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API Py_ssize_t bytes_copied = PyLong_AsNativeBytes( x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0)); if (unlikely(bytes_copied == -1)) { } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) { goto raise_overflow; } else { ret = 0; } #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; ret = _PyLong_AsByteArray((PyLongObject *)x, bytes, sizeof(val), is_little, !is_unsigned); #else PyObject *v; PyObject *stepval = NULL, *mask = NULL, *shift = NULL; int bits, remaining_bits, is_negative = 0; int chunk_size = (sizeof(long) < 8) ? 30 : 62; if (likely(PyLong_CheckExact(x))) { v = __Pyx_NewRef(x); } else { v = PyNumber_Long(x); if (unlikely(!v)) return (long) -1; assert(PyLong_CheckExact(v)); } { int result = PyObject_RichCompareBool(v, Py_False, Py_LT); if (unlikely(result < 0)) { Py_DECREF(v); return (long) -1; } is_negative = result == 1; } if (is_unsigned && unlikely(is_negative)) { Py_DECREF(v); goto raise_neg_overflow; } else if (is_negative) { stepval = PyNumber_Invert(v); Py_DECREF(v); if (unlikely(!stepval)) return (long) -1; } else { stepval = v; } v = NULL; val = (long) 0; mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; for (bits = 0; bits < (int) sizeof(long) * 8 - chunk_size; bits += chunk_size) { PyObject *tmp, *digit; long idigit; digit = PyNumber_And(stepval, mask); if (unlikely(!digit)) goto done; idigit = PyLong_AsLong(digit); Py_DECREF(digit); if (unlikely(idigit < 0)) goto done; val |= ((long) idigit) << bits; tmp = PyNumber_Rshift(stepval, shift); if (unlikely(!tmp)) goto done; Py_DECREF(stepval); stepval = tmp; } Py_DECREF(shift); shift = NULL; Py_DECREF(mask); mask = NULL; { long idigit = PyLong_AsLong(stepval); if (unlikely(idigit < 0)) goto done; remaining_bits = ((int) sizeof(long) * 8) - bits - (is_unsigned ? 0 : 1); if (unlikely(idigit >= (1L << remaining_bits))) goto raise_overflow; val |= ((long) idigit) << bits; } if (!is_unsigned) { if (unlikely(val & (((long) 1) << (sizeof(long) * 8 - 1)))) goto raise_overflow; if (is_negative) val = ~val; } ret = 0; done: Py_XDECREF(shift); Py_XDECREF(mask); Py_XDECREF(stepval); #endif if (unlikely(ret)) return (long) -1; return val; } raise_overflow: PyErr_SetString(PyExc_OverflowError, "value too large to convert to long"); return (long) -1; raise_neg_overflow: PyErr_SetString(PyExc_OverflowError, "can't convert negative value to long"); return (long) -1; } /* CIntToPy */ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const long neg_one = (long) -1, const_zero = (long) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(long) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(long) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); #ifdef HAVE_LONG_LONG } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); #endif } } else { if (sizeof(long) <= sizeof(long)) { return PyInt_FromLong((long) value); #ifdef HAVE_LONG_LONG } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { return PyLong_FromLongLong((PY_LONG_LONG) value); #endif } } { unsigned char *bytes = (unsigned char *)&value; #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 if (is_unsigned) { return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); } else { return PyLong_FromNativeBytes(bytes, sizeof(value), -1); } #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 int one = 1; int little = (int)*(unsigned char *)&one; return _PyLong_FromByteArray(bytes, sizeof(long), little, !is_unsigned); #else int one = 1; int little = (int)*(unsigned char *)&one; PyObject *from_bytes, *result = NULL; PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); if (!from_bytes) return NULL; py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(long)); if (!py_bytes) goto limited_bad; order_str = PyUnicode_FromString(little ? "little" : "big"); if (!order_str) goto limited_bad; arg_tuple = PyTuple_Pack(2, py_bytes, order_str); if (!arg_tuple) goto limited_bad; if (!is_unsigned) { kwds = PyDict_New(); if (!kwds) goto limited_bad; if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; } result = PyObject_Call(from_bytes, arg_tuple, kwds); limited_bad: Py_XDECREF(kwds); Py_XDECREF(arg_tuple); Py_XDECREF(order_str); Py_XDECREF(py_bytes); Py_XDECREF(from_bytes); return result; #endif } } /* CIntToPy */ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int8_t(int8_t value) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const int8_t neg_one = (int8_t) -1, const_zero = (int8_t) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(int8_t) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(int8_t) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); #ifdef HAVE_LONG_LONG } else if (sizeof(int8_t) <= sizeof(unsigned PY_LONG_LONG)) { return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); #endif } } else { if (sizeof(int8_t) <= sizeof(long)) { return PyInt_FromLong((long) value); #ifdef HAVE_LONG_LONG } else if (sizeof(int8_t) <= sizeof(PY_LONG_LONG)) { return PyLong_FromLongLong((PY_LONG_LONG) value); #endif } } { unsigned char *bytes = (unsigned char *)&value; #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 if (is_unsigned) { return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); } else { return PyLong_FromNativeBytes(bytes, sizeof(value), -1); } #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 int one = 1; int little = (int)*(unsigned char *)&one; return _PyLong_FromByteArray(bytes, sizeof(int8_t), little, !is_unsigned); #else int one = 1; int little = (int)*(unsigned char *)&one; PyObject *from_bytes, *result = NULL; PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); if (!from_bytes) return NULL; py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(int8_t)); if (!py_bytes) goto limited_bad; order_str = PyUnicode_FromString(little ? "little" : "big"); if (!order_str) goto limited_bad; arg_tuple = PyTuple_Pack(2, py_bytes, order_str); if (!arg_tuple) goto limited_bad; if (!is_unsigned) { kwds = PyDict_New(); if (!kwds) goto limited_bad; if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; } result = PyObject_Call(from_bytes, arg_tuple, kwds); limited_bad: Py_XDECREF(kwds); Py_XDECREF(arg_tuple); Py_XDECREF(order_str); Py_XDECREF(py_bytes); Py_XDECREF(from_bytes); return result; #endif } } /* CIntToPy */ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int16_t(int16_t value) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const int16_t neg_one = (int16_t) -1, const_zero = (int16_t) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(int16_t) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(int16_t) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); #ifdef HAVE_LONG_LONG } else if (sizeof(int16_t) <= sizeof(unsigned PY_LONG_LONG)) { return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); #endif } } else { if (sizeof(int16_t) <= sizeof(long)) { return PyInt_FromLong((long) value); #ifdef HAVE_LONG_LONG } else if (sizeof(int16_t) <= sizeof(PY_LONG_LONG)) { return PyLong_FromLongLong((PY_LONG_LONG) value); #endif } } { unsigned char *bytes = (unsigned char *)&value; #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 if (is_unsigned) { return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); } else { return PyLong_FromNativeBytes(bytes, sizeof(value), -1); } #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 int one = 1; int little = (int)*(unsigned char *)&one; return _PyLong_FromByteArray(bytes, sizeof(int16_t), little, !is_unsigned); #else int one = 1; int little = (int)*(unsigned char *)&one; PyObject *from_bytes, *result = NULL; PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); if (!from_bytes) return NULL; py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(int16_t)); if (!py_bytes) goto limited_bad; order_str = PyUnicode_FromString(little ? "little" : "big"); if (!order_str) goto limited_bad; arg_tuple = PyTuple_Pack(2, py_bytes, order_str); if (!arg_tuple) goto limited_bad; if (!is_unsigned) { kwds = PyDict_New(); if (!kwds) goto limited_bad; if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; } result = PyObject_Call(from_bytes, arg_tuple, kwds); limited_bad: Py_XDECREF(kwds); Py_XDECREF(arg_tuple); Py_XDECREF(order_str); Py_XDECREF(py_bytes); Py_XDECREF(from_bytes); return result; #endif } } /* CIntFromPy */ static CYTHON_INLINE int8_t __Pyx_PyInt_As_int8_t(PyObject *x) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const int8_t neg_one = (int8_t) -1, const_zero = (int8_t) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if ((sizeof(int8_t) < sizeof(long))) { __PYX_VERIFY_RETURN_INT(int8_t, long, PyInt_AS_LONG(x)) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { goto raise_neg_overflow; } return (int8_t) val; } } #endif if (unlikely(!PyLong_Check(x))) { int8_t val; PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); if (!tmp) return (int8_t) -1; val = __Pyx_PyInt_As_int8_t(tmp); Py_DECREF(tmp); return val; } if (is_unsigned) { #if CYTHON_USE_PYLONG_INTERNALS if (unlikely(__Pyx_PyLong_IsNeg(x))) { goto raise_neg_overflow; } else if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(int8_t, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_DigitCount(x)) { case 2: if ((8 * sizeof(int8_t) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int8_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int8_t) >= 2 * PyLong_SHIFT)) { return (int8_t) (((((int8_t)digits[1]) << PyLong_SHIFT) | (int8_t)digits[0])); } } break; case 3: if ((8 * sizeof(int8_t) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int8_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int8_t) >= 3 * PyLong_SHIFT)) { return (int8_t) (((((((int8_t)digits[2]) << PyLong_SHIFT) | (int8_t)digits[1]) << PyLong_SHIFT) | (int8_t)digits[0])); } } break; case 4: if ((8 * sizeof(int8_t) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int8_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int8_t) >= 4 * PyLong_SHIFT)) { return (int8_t) (((((((((int8_t)digits[3]) << PyLong_SHIFT) | (int8_t)digits[2]) << PyLong_SHIFT) | (int8_t)digits[1]) << PyLong_SHIFT) | (int8_t)digits[0])); } } break; } } #endif #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 if (unlikely(Py_SIZE(x) < 0)) { goto raise_neg_overflow; } #else { int result = PyObject_RichCompareBool(x, Py_False, Py_LT); if (unlikely(result < 0)) return (int8_t) -1; if (unlikely(result == 1)) goto raise_neg_overflow; } #endif if ((sizeof(int8_t) <= sizeof(unsigned long))) { __PYX_VERIFY_RETURN_INT_EXC(int8_t, unsigned long, PyLong_AsUnsignedLong(x)) #ifdef HAVE_LONG_LONG } else if ((sizeof(int8_t) <= sizeof(unsigned PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(int8_t, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) #endif } } else { #if CYTHON_USE_PYLONG_INTERNALS if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(int8_t, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_SignedDigitCount(x)) { case -2: if ((8 * sizeof(int8_t) - 1 > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int8_t, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int8_t) - 1 > 2 * PyLong_SHIFT)) { return (int8_t) (((int8_t)-1)*(((((int8_t)digits[1]) << PyLong_SHIFT) | (int8_t)digits[0]))); } } break; case 2: if ((8 * sizeof(int8_t) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int8_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int8_t) - 1 > 2 * PyLong_SHIFT)) { return (int8_t) ((((((int8_t)digits[1]) << PyLong_SHIFT) | (int8_t)digits[0]))); } } break; case -3: if ((8 * sizeof(int8_t) - 1 > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int8_t, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int8_t) - 1 > 3 * PyLong_SHIFT)) { return (int8_t) (((int8_t)-1)*(((((((int8_t)digits[2]) << PyLong_SHIFT) | (int8_t)digits[1]) << PyLong_SHIFT) | (int8_t)digits[0]))); } } break; case 3: if ((8 * sizeof(int8_t) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int8_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int8_t) - 1 > 3 * PyLong_SHIFT)) { return (int8_t) ((((((((int8_t)digits[2]) << PyLong_SHIFT) | (int8_t)digits[1]) << PyLong_SHIFT) | (int8_t)digits[0]))); } } break; case -4: if ((8 * sizeof(int8_t) - 1 > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int8_t, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int8_t) - 1 > 4 * PyLong_SHIFT)) { return (int8_t) (((int8_t)-1)*(((((((((int8_t)digits[3]) << PyLong_SHIFT) | (int8_t)digits[2]) << PyLong_SHIFT) | (int8_t)digits[1]) << PyLong_SHIFT) | (int8_t)digits[0]))); } } break; case 4: if ((8 * sizeof(int8_t) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int8_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int8_t) - 1 > 4 * PyLong_SHIFT)) { return (int8_t) ((((((((((int8_t)digits[3]) << PyLong_SHIFT) | (int8_t)digits[2]) << PyLong_SHIFT) | (int8_t)digits[1]) << PyLong_SHIFT) | (int8_t)digits[0]))); } } break; } } #endif if ((sizeof(int8_t) <= sizeof(long))) { __PYX_VERIFY_RETURN_INT_EXC(int8_t, long, PyLong_AsLong(x)) #ifdef HAVE_LONG_LONG } else if ((sizeof(int8_t) <= sizeof(PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(int8_t, PY_LONG_LONG, PyLong_AsLongLong(x)) #endif } } { int8_t val; int ret = -1; #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API Py_ssize_t bytes_copied = PyLong_AsNativeBytes( x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0)); if (unlikely(bytes_copied == -1)) { } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) { goto raise_overflow; } else { ret = 0; } #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; ret = _PyLong_AsByteArray((PyLongObject *)x, bytes, sizeof(val), is_little, !is_unsigned); #else PyObject *v; PyObject *stepval = NULL, *mask = NULL, *shift = NULL; int bits, remaining_bits, is_negative = 0; int chunk_size = (sizeof(long) < 8) ? 30 : 62; if (likely(PyLong_CheckExact(x))) { v = __Pyx_NewRef(x); } else { v = PyNumber_Long(x); if (unlikely(!v)) return (int8_t) -1; assert(PyLong_CheckExact(v)); } { int result = PyObject_RichCompareBool(v, Py_False, Py_LT); if (unlikely(result < 0)) { Py_DECREF(v); return (int8_t) -1; } is_negative = result == 1; } if (is_unsigned && unlikely(is_negative)) { Py_DECREF(v); goto raise_neg_overflow; } else if (is_negative) { stepval = PyNumber_Invert(v); Py_DECREF(v); if (unlikely(!stepval)) return (int8_t) -1; } else { stepval = v; } v = NULL; val = (int8_t) 0; mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; for (bits = 0; bits < (int) sizeof(int8_t) * 8 - chunk_size; bits += chunk_size) { PyObject *tmp, *digit; long idigit; digit = PyNumber_And(stepval, mask); if (unlikely(!digit)) goto done; idigit = PyLong_AsLong(digit); Py_DECREF(digit); if (unlikely(idigit < 0)) goto done; val |= ((int8_t) idigit) << bits; tmp = PyNumber_Rshift(stepval, shift); if (unlikely(!tmp)) goto done; Py_DECREF(stepval); stepval = tmp; } Py_DECREF(shift); shift = NULL; Py_DECREF(mask); mask = NULL; { long idigit = PyLong_AsLong(stepval); if (unlikely(idigit < 0)) goto done; remaining_bits = ((int) sizeof(int8_t) * 8) - bits - (is_unsigned ? 0 : 1); if (unlikely(idigit >= (1L << remaining_bits))) goto raise_overflow; val |= ((int8_t) idigit) << bits; } if (!is_unsigned) { if (unlikely(val & (((int8_t) 1) << (sizeof(int8_t) * 8 - 1)))) goto raise_overflow; if (is_negative) val = ~val; } ret = 0; done: Py_XDECREF(shift); Py_XDECREF(mask); Py_XDECREF(stepval); #endif if (unlikely(ret)) return (int8_t) -1; return val; } raise_overflow: PyErr_SetString(PyExc_OverflowError, "value too large to convert to int8_t"); return (int8_t) -1; raise_neg_overflow: PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int8_t"); return (int8_t) -1; } /* CIntFromPy */ static CYTHON_INLINE int16_t __Pyx_PyInt_As_int16_t(PyObject *x) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const int16_t neg_one = (int16_t) -1, const_zero = (int16_t) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if ((sizeof(int16_t) < sizeof(long))) { __PYX_VERIFY_RETURN_INT(int16_t, long, PyInt_AS_LONG(x)) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { goto raise_neg_overflow; } return (int16_t) val; } } #endif if (unlikely(!PyLong_Check(x))) { int16_t val; PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); if (!tmp) return (int16_t) -1; val = __Pyx_PyInt_As_int16_t(tmp); Py_DECREF(tmp); return val; } if (is_unsigned) { #if CYTHON_USE_PYLONG_INTERNALS if (unlikely(__Pyx_PyLong_IsNeg(x))) { goto raise_neg_overflow; } else if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(int16_t, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_DigitCount(x)) { case 2: if ((8 * sizeof(int16_t) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int16_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int16_t) >= 2 * PyLong_SHIFT)) { return (int16_t) (((((int16_t)digits[1]) << PyLong_SHIFT) | (int16_t)digits[0])); } } break; case 3: if ((8 * sizeof(int16_t) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int16_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int16_t) >= 3 * PyLong_SHIFT)) { return (int16_t) (((((((int16_t)digits[2]) << PyLong_SHIFT) | (int16_t)digits[1]) << PyLong_SHIFT) | (int16_t)digits[0])); } } break; case 4: if ((8 * sizeof(int16_t) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int16_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int16_t) >= 4 * PyLong_SHIFT)) { return (int16_t) (((((((((int16_t)digits[3]) << PyLong_SHIFT) | (int16_t)digits[2]) << PyLong_SHIFT) | (int16_t)digits[1]) << PyLong_SHIFT) | (int16_t)digits[0])); } } break; } } #endif #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 if (unlikely(Py_SIZE(x) < 0)) { goto raise_neg_overflow; } #else { int result = PyObject_RichCompareBool(x, Py_False, Py_LT); if (unlikely(result < 0)) return (int16_t) -1; if (unlikely(result == 1)) goto raise_neg_overflow; } #endif if ((sizeof(int16_t) <= sizeof(unsigned long))) { __PYX_VERIFY_RETURN_INT_EXC(int16_t, unsigned long, PyLong_AsUnsignedLong(x)) #ifdef HAVE_LONG_LONG } else if ((sizeof(int16_t) <= sizeof(unsigned PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(int16_t, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) #endif } } else { #if CYTHON_USE_PYLONG_INTERNALS if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(int16_t, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_SignedDigitCount(x)) { case -2: if ((8 * sizeof(int16_t) - 1 > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int16_t, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int16_t) - 1 > 2 * PyLong_SHIFT)) { return (int16_t) (((int16_t)-1)*(((((int16_t)digits[1]) << PyLong_SHIFT) | (int16_t)digits[0]))); } } break; case 2: if ((8 * sizeof(int16_t) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int16_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int16_t) - 1 > 2 * PyLong_SHIFT)) { return (int16_t) ((((((int16_t)digits[1]) << PyLong_SHIFT) | (int16_t)digits[0]))); } } break; case -3: if ((8 * sizeof(int16_t) - 1 > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int16_t, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int16_t) - 1 > 3 * PyLong_SHIFT)) { return (int16_t) (((int16_t)-1)*(((((((int16_t)digits[2]) << PyLong_SHIFT) | (int16_t)digits[1]) << PyLong_SHIFT) | (int16_t)digits[0]))); } } break; case 3: if ((8 * sizeof(int16_t) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int16_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int16_t) - 1 > 3 * PyLong_SHIFT)) { return (int16_t) ((((((((int16_t)digits[2]) << PyLong_SHIFT) | (int16_t)digits[1]) << PyLong_SHIFT) | (int16_t)digits[0]))); } } break; case -4: if ((8 * sizeof(int16_t) - 1 > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int16_t, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int16_t) - 1 > 4 * PyLong_SHIFT)) { return (int16_t) (((int16_t)-1)*(((((((((int16_t)digits[3]) << PyLong_SHIFT) | (int16_t)digits[2]) << PyLong_SHIFT) | (int16_t)digits[1]) << PyLong_SHIFT) | (int16_t)digits[0]))); } } break; case 4: if ((8 * sizeof(int16_t) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int16_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int16_t) - 1 > 4 * PyLong_SHIFT)) { return (int16_t) ((((((((((int16_t)digits[3]) << PyLong_SHIFT) | (int16_t)digits[2]) << PyLong_SHIFT) | (int16_t)digits[1]) << PyLong_SHIFT) | (int16_t)digits[0]))); } } break; } } #endif if ((sizeof(int16_t) <= sizeof(long))) { __PYX_VERIFY_RETURN_INT_EXC(int16_t, long, PyLong_AsLong(x)) #ifdef HAVE_LONG_LONG } else if ((sizeof(int16_t) <= sizeof(PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(int16_t, PY_LONG_LONG, PyLong_AsLongLong(x)) #endif } } { int16_t val; int ret = -1; #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API Py_ssize_t bytes_copied = PyLong_AsNativeBytes( x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0)); if (unlikely(bytes_copied == -1)) { } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) { goto raise_overflow; } else { ret = 0; } #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; ret = _PyLong_AsByteArray((PyLongObject *)x, bytes, sizeof(val), is_little, !is_unsigned); #else PyObject *v; PyObject *stepval = NULL, *mask = NULL, *shift = NULL; int bits, remaining_bits, is_negative = 0; int chunk_size = (sizeof(long) < 8) ? 30 : 62; if (likely(PyLong_CheckExact(x))) { v = __Pyx_NewRef(x); } else { v = PyNumber_Long(x); if (unlikely(!v)) return (int16_t) -1; assert(PyLong_CheckExact(v)); } { int result = PyObject_RichCompareBool(v, Py_False, Py_LT); if (unlikely(result < 0)) { Py_DECREF(v); return (int16_t) -1; } is_negative = result == 1; } if (is_unsigned && unlikely(is_negative)) { Py_DECREF(v); goto raise_neg_overflow; } else if (is_negative) { stepval = PyNumber_Invert(v); Py_DECREF(v); if (unlikely(!stepval)) return (int16_t) -1; } else { stepval = v; } v = NULL; val = (int16_t) 0; mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; for (bits = 0; bits < (int) sizeof(int16_t) * 8 - chunk_size; bits += chunk_size) { PyObject *tmp, *digit; long idigit; digit = PyNumber_And(stepval, mask); if (unlikely(!digit)) goto done; idigit = PyLong_AsLong(digit); Py_DECREF(digit); if (unlikely(idigit < 0)) goto done; val |= ((int16_t) idigit) << bits; tmp = PyNumber_Rshift(stepval, shift); if (unlikely(!tmp)) goto done; Py_DECREF(stepval); stepval = tmp; } Py_DECREF(shift); shift = NULL; Py_DECREF(mask); mask = NULL; { long idigit = PyLong_AsLong(stepval); if (unlikely(idigit < 0)) goto done; remaining_bits = ((int) sizeof(int16_t) * 8) - bits - (is_unsigned ? 0 : 1); if (unlikely(idigit >= (1L << remaining_bits))) goto raise_overflow; val |= ((int16_t) idigit) << bits; } if (!is_unsigned) { if (unlikely(val & (((int16_t) 1) << (sizeof(int16_t) * 8 - 1)))) goto raise_overflow; if (is_negative) val = ~val; } ret = 0; done: Py_XDECREF(shift); Py_XDECREF(mask); Py_XDECREF(stepval); #endif if (unlikely(ret)) return (int16_t) -1; return val; } raise_overflow: PyErr_SetString(PyExc_OverflowError, "value too large to convert to int16_t"); return (int16_t) -1; raise_neg_overflow: PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int16_t"); return (int16_t) -1; } /* CIntToPy */ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_uint32_t(uint32_t value) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const uint32_t neg_one = (uint32_t) -1, const_zero = (uint32_t) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(uint32_t) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(uint32_t) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); #ifdef HAVE_LONG_LONG } else if (sizeof(uint32_t) <= sizeof(unsigned PY_LONG_LONG)) { return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); #endif } } else { if (sizeof(uint32_t) <= sizeof(long)) { return PyInt_FromLong((long) value); #ifdef HAVE_LONG_LONG } else if (sizeof(uint32_t) <= sizeof(PY_LONG_LONG)) { return PyLong_FromLongLong((PY_LONG_LONG) value); #endif } } { unsigned char *bytes = (unsigned char *)&value; #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 if (is_unsigned) { return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); } else { return PyLong_FromNativeBytes(bytes, sizeof(value), -1); } #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 int one = 1; int little = (int)*(unsigned char *)&one; return _PyLong_FromByteArray(bytes, sizeof(uint32_t), little, !is_unsigned); #else int one = 1; int little = (int)*(unsigned char *)&one; PyObject *from_bytes, *result = NULL; PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); if (!from_bytes) return NULL; py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(uint32_t)); if (!py_bytes) goto limited_bad; order_str = PyUnicode_FromString(little ? "little" : "big"); if (!order_str) goto limited_bad; arg_tuple = PyTuple_Pack(2, py_bytes, order_str); if (!arg_tuple) goto limited_bad; if (!is_unsigned) { kwds = PyDict_New(); if (!kwds) goto limited_bad; if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; } result = PyObject_Call(from_bytes, arg_tuple, kwds); limited_bad: Py_XDECREF(kwds); Py_XDECREF(arg_tuple); Py_XDECREF(order_str); Py_XDECREF(py_bytes); Py_XDECREF(from_bytes); return result; #endif } } /* CIntFromPy */ static CYTHON_INLINE uint32_t __Pyx_PyInt_As_uint32_t(PyObject *x) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const uint32_t neg_one = (uint32_t) -1, const_zero = (uint32_t) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if ((sizeof(uint32_t) < sizeof(long))) { __PYX_VERIFY_RETURN_INT(uint32_t, long, PyInt_AS_LONG(x)) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { goto raise_neg_overflow; } return (uint32_t) val; } } #endif if (unlikely(!PyLong_Check(x))) { uint32_t val; PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); if (!tmp) return (uint32_t) -1; val = __Pyx_PyInt_As_uint32_t(tmp); Py_DECREF(tmp); return val; } if (is_unsigned) { #if CYTHON_USE_PYLONG_INTERNALS if (unlikely(__Pyx_PyLong_IsNeg(x))) { goto raise_neg_overflow; } else if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(uint32_t, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_DigitCount(x)) { case 2: if ((8 * sizeof(uint32_t) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(uint32_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(uint32_t) >= 2 * PyLong_SHIFT)) { return (uint32_t) (((((uint32_t)digits[1]) << PyLong_SHIFT) | (uint32_t)digits[0])); } } break; case 3: if ((8 * sizeof(uint32_t) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(uint32_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(uint32_t) >= 3 * PyLong_SHIFT)) { return (uint32_t) (((((((uint32_t)digits[2]) << PyLong_SHIFT) | (uint32_t)digits[1]) << PyLong_SHIFT) | (uint32_t)digits[0])); } } break; case 4: if ((8 * sizeof(uint32_t) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(uint32_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(uint32_t) >= 4 * PyLong_SHIFT)) { return (uint32_t) (((((((((uint32_t)digits[3]) << PyLong_SHIFT) | (uint32_t)digits[2]) << PyLong_SHIFT) | (uint32_t)digits[1]) << PyLong_SHIFT) | (uint32_t)digits[0])); } } break; } } #endif #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 if (unlikely(Py_SIZE(x) < 0)) { goto raise_neg_overflow; } #else { int result = PyObject_RichCompareBool(x, Py_False, Py_LT); if (unlikely(result < 0)) return (uint32_t) -1; if (unlikely(result == 1)) goto raise_neg_overflow; } #endif if ((sizeof(uint32_t) <= sizeof(unsigned long))) { __PYX_VERIFY_RETURN_INT_EXC(uint32_t, unsigned long, PyLong_AsUnsignedLong(x)) #ifdef HAVE_LONG_LONG } else if ((sizeof(uint32_t) <= sizeof(unsigned PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(uint32_t, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) #endif } } else { #if CYTHON_USE_PYLONG_INTERNALS if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(uint32_t, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_SignedDigitCount(x)) { case -2: if ((8 * sizeof(uint32_t) - 1 > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(uint32_t, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(uint32_t) - 1 > 2 * PyLong_SHIFT)) { return (uint32_t) (((uint32_t)-1)*(((((uint32_t)digits[1]) << PyLong_SHIFT) | (uint32_t)digits[0]))); } } break; case 2: if ((8 * sizeof(uint32_t) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(uint32_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(uint32_t) - 1 > 2 * PyLong_SHIFT)) { return (uint32_t) ((((((uint32_t)digits[1]) << PyLong_SHIFT) | (uint32_t)digits[0]))); } } break; case -3: if ((8 * sizeof(uint32_t) - 1 > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(uint32_t, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(uint32_t) - 1 > 3 * PyLong_SHIFT)) { return (uint32_t) (((uint32_t)-1)*(((((((uint32_t)digits[2]) << PyLong_SHIFT) | (uint32_t)digits[1]) << PyLong_SHIFT) | (uint32_t)digits[0]))); } } break; case 3: if ((8 * sizeof(uint32_t) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(uint32_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(uint32_t) - 1 > 3 * PyLong_SHIFT)) { return (uint32_t) ((((((((uint32_t)digits[2]) << PyLong_SHIFT) | (uint32_t)digits[1]) << PyLong_SHIFT) | (uint32_t)digits[0]))); } } break; case -4: if ((8 * sizeof(uint32_t) - 1 > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(uint32_t, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(uint32_t) - 1 > 4 * PyLong_SHIFT)) { return (uint32_t) (((uint32_t)-1)*(((((((((uint32_t)digits[3]) << PyLong_SHIFT) | (uint32_t)digits[2]) << PyLong_SHIFT) | (uint32_t)digits[1]) << PyLong_SHIFT) | (uint32_t)digits[0]))); } } break; case 4: if ((8 * sizeof(uint32_t) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(uint32_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(uint32_t) - 1 > 4 * PyLong_SHIFT)) { return (uint32_t) ((((((((((uint32_t)digits[3]) << PyLong_SHIFT) | (uint32_t)digits[2]) << PyLong_SHIFT) | (uint32_t)digits[1]) << PyLong_SHIFT) | (uint32_t)digits[0]))); } } break; } } #endif if ((sizeof(uint32_t) <= sizeof(long))) { __PYX_VERIFY_RETURN_INT_EXC(uint32_t, long, PyLong_AsLong(x)) #ifdef HAVE_LONG_LONG } else if ((sizeof(uint32_t) <= sizeof(PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(uint32_t, PY_LONG_LONG, PyLong_AsLongLong(x)) #endif } } { uint32_t val; int ret = -1; #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API Py_ssize_t bytes_copied = PyLong_AsNativeBytes( x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0)); if (unlikely(bytes_copied == -1)) { } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) { goto raise_overflow; } else { ret = 0; } #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; ret = _PyLong_AsByteArray((PyLongObject *)x, bytes, sizeof(val), is_little, !is_unsigned); #else PyObject *v; PyObject *stepval = NULL, *mask = NULL, *shift = NULL; int bits, remaining_bits, is_negative = 0; int chunk_size = (sizeof(long) < 8) ? 30 : 62; if (likely(PyLong_CheckExact(x))) { v = __Pyx_NewRef(x); } else { v = PyNumber_Long(x); if (unlikely(!v)) return (uint32_t) -1; assert(PyLong_CheckExact(v)); } { int result = PyObject_RichCompareBool(v, Py_False, Py_LT); if (unlikely(result < 0)) { Py_DECREF(v); return (uint32_t) -1; } is_negative = result == 1; } if (is_unsigned && unlikely(is_negative)) { Py_DECREF(v); goto raise_neg_overflow; } else if (is_negative) { stepval = PyNumber_Invert(v); Py_DECREF(v); if (unlikely(!stepval)) return (uint32_t) -1; } else { stepval = v; } v = NULL; val = (uint32_t) 0; mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; for (bits = 0; bits < (int) sizeof(uint32_t) * 8 - chunk_size; bits += chunk_size) { PyObject *tmp, *digit; long idigit; digit = PyNumber_And(stepval, mask); if (unlikely(!digit)) goto done; idigit = PyLong_AsLong(digit); Py_DECREF(digit); if (unlikely(idigit < 0)) goto done; val |= ((uint32_t) idigit) << bits; tmp = PyNumber_Rshift(stepval, shift); if (unlikely(!tmp)) goto done; Py_DECREF(stepval); stepval = tmp; } Py_DECREF(shift); shift = NULL; Py_DECREF(mask); mask = NULL; { long idigit = PyLong_AsLong(stepval); if (unlikely(idigit < 0)) goto done; remaining_bits = ((int) sizeof(uint32_t) * 8) - bits - (is_unsigned ? 0 : 1); if (unlikely(idigit >= (1L << remaining_bits))) goto raise_overflow; val |= ((uint32_t) idigit) << bits; } if (!is_unsigned) { if (unlikely(val & (((uint32_t) 1) << (sizeof(uint32_t) * 8 - 1)))) goto raise_overflow; if (is_negative) val = ~val; } ret = 0; done: Py_XDECREF(shift); Py_XDECREF(mask); Py_XDECREF(stepval); #endif if (unlikely(ret)) return (uint32_t) -1; return val; } raise_overflow: PyErr_SetString(PyExc_OverflowError, "value too large to convert to uint32_t"); return (uint32_t) -1; raise_neg_overflow: PyErr_SetString(PyExc_OverflowError, "can't convert negative value to uint32_t"); return (uint32_t) -1; } /* CIntToPy */ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_uint8_t(uint8_t value) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const uint8_t neg_one = (uint8_t) -1, const_zero = (uint8_t) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(uint8_t) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(uint8_t) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); #ifdef HAVE_LONG_LONG } else if (sizeof(uint8_t) <= sizeof(unsigned PY_LONG_LONG)) { return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); #endif } } else { if (sizeof(uint8_t) <= sizeof(long)) { return PyInt_FromLong((long) value); #ifdef HAVE_LONG_LONG } else if (sizeof(uint8_t) <= sizeof(PY_LONG_LONG)) { return PyLong_FromLongLong((PY_LONG_LONG) value); #endif } } { unsigned char *bytes = (unsigned char *)&value; #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 if (is_unsigned) { return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); } else { return PyLong_FromNativeBytes(bytes, sizeof(value), -1); } #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 int one = 1; int little = (int)*(unsigned char *)&one; return _PyLong_FromByteArray(bytes, sizeof(uint8_t), little, !is_unsigned); #else int one = 1; int little = (int)*(unsigned char *)&one; PyObject *from_bytes, *result = NULL; PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); if (!from_bytes) return NULL; py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(uint8_t)); if (!py_bytes) goto limited_bad; order_str = PyUnicode_FromString(little ? "little" : "big"); if (!order_str) goto limited_bad; arg_tuple = PyTuple_Pack(2, py_bytes, order_str); if (!arg_tuple) goto limited_bad; if (!is_unsigned) { kwds = PyDict_New(); if (!kwds) goto limited_bad; if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; } result = PyObject_Call(from_bytes, arg_tuple, kwds); limited_bad: Py_XDECREF(kwds); Py_XDECREF(arg_tuple); Py_XDECREF(order_str); Py_XDECREF(py_bytes); Py_XDECREF(from_bytes); return result; #endif } } /* CIntFromPy */ static CYTHON_INLINE int64_t __Pyx_PyInt_As_int64_t(PyObject *x) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const int64_t neg_one = (int64_t) -1, const_zero = (int64_t) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { if ((sizeof(int64_t) < sizeof(long))) { __PYX_VERIFY_RETURN_INT(int64_t, long, PyInt_AS_LONG(x)) } else { long val = PyInt_AS_LONG(x); if (is_unsigned && unlikely(val < 0)) { goto raise_neg_overflow; } return (int64_t) val; } } #endif if (unlikely(!PyLong_Check(x))) { int64_t val; PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); if (!tmp) return (int64_t) -1; val = __Pyx_PyInt_As_int64_t(tmp); Py_DECREF(tmp); return val; } if (is_unsigned) { #if CYTHON_USE_PYLONG_INTERNALS if (unlikely(__Pyx_PyLong_IsNeg(x))) { goto raise_neg_overflow; } else if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(int64_t, __Pyx_compact_upylong, __Pyx_PyLong_CompactValueUnsigned(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_DigitCount(x)) { case 2: if ((8 * sizeof(int64_t) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int64_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int64_t) >= 2 * PyLong_SHIFT)) { return (int64_t) (((((int64_t)digits[1]) << PyLong_SHIFT) | (int64_t)digits[0])); } } break; case 3: if ((8 * sizeof(int64_t) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int64_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int64_t) >= 3 * PyLong_SHIFT)) { return (int64_t) (((((((int64_t)digits[2]) << PyLong_SHIFT) | (int64_t)digits[1]) << PyLong_SHIFT) | (int64_t)digits[0])); } } break; case 4: if ((8 * sizeof(int64_t) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int64_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int64_t) >= 4 * PyLong_SHIFT)) { return (int64_t) (((((((((int64_t)digits[3]) << PyLong_SHIFT) | (int64_t)digits[2]) << PyLong_SHIFT) | (int64_t)digits[1]) << PyLong_SHIFT) | (int64_t)digits[0])); } } break; } } #endif #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030C00A7 if (unlikely(Py_SIZE(x) < 0)) { goto raise_neg_overflow; } #else { int result = PyObject_RichCompareBool(x, Py_False, Py_LT); if (unlikely(result < 0)) return (int64_t) -1; if (unlikely(result == 1)) goto raise_neg_overflow; } #endif if ((sizeof(int64_t) <= sizeof(unsigned long))) { __PYX_VERIFY_RETURN_INT_EXC(int64_t, unsigned long, PyLong_AsUnsignedLong(x)) #ifdef HAVE_LONG_LONG } else if ((sizeof(int64_t) <= sizeof(unsigned PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(int64_t, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) #endif } } else { #if CYTHON_USE_PYLONG_INTERNALS if (__Pyx_PyLong_IsCompact(x)) { __PYX_VERIFY_RETURN_INT(int64_t, __Pyx_compact_pylong, __Pyx_PyLong_CompactValue(x)) } else { const digit* digits = __Pyx_PyLong_Digits(x); assert(__Pyx_PyLong_DigitCount(x) > 1); switch (__Pyx_PyLong_SignedDigitCount(x)) { case -2: if ((8 * sizeof(int64_t) - 1 > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int64_t, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int64_t) - 1 > 2 * PyLong_SHIFT)) { return (int64_t) (((int64_t)-1)*(((((int64_t)digits[1]) << PyLong_SHIFT) | (int64_t)digits[0]))); } } break; case 2: if ((8 * sizeof(int64_t) > 1 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 2 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int64_t, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int64_t) - 1 > 2 * PyLong_SHIFT)) { return (int64_t) ((((((int64_t)digits[1]) << PyLong_SHIFT) | (int64_t)digits[0]))); } } break; case -3: if ((8 * sizeof(int64_t) - 1 > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int64_t, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int64_t) - 1 > 3 * PyLong_SHIFT)) { return (int64_t) (((int64_t)-1)*(((((((int64_t)digits[2]) << PyLong_SHIFT) | (int64_t)digits[1]) << PyLong_SHIFT) | (int64_t)digits[0]))); } } break; case 3: if ((8 * sizeof(int64_t) > 2 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 3 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int64_t, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int64_t) - 1 > 3 * PyLong_SHIFT)) { return (int64_t) ((((((((int64_t)digits[2]) << PyLong_SHIFT) | (int64_t)digits[1]) << PyLong_SHIFT) | (int64_t)digits[0]))); } } break; case -4: if ((8 * sizeof(int64_t) - 1 > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int64_t, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int64_t) - 1 > 4 * PyLong_SHIFT)) { return (int64_t) (((int64_t)-1)*(((((((((int64_t)digits[3]) << PyLong_SHIFT) | (int64_t)digits[2]) << PyLong_SHIFT) | (int64_t)digits[1]) << PyLong_SHIFT) | (int64_t)digits[0]))); } } break; case 4: if ((8 * sizeof(int64_t) > 3 * PyLong_SHIFT)) { if ((8 * sizeof(unsigned long) > 4 * PyLong_SHIFT)) { __PYX_VERIFY_RETURN_INT(int64_t, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) } else if ((8 * sizeof(int64_t) - 1 > 4 * PyLong_SHIFT)) { return (int64_t) ((((((((((int64_t)digits[3]) << PyLong_SHIFT) | (int64_t)digits[2]) << PyLong_SHIFT) | (int64_t)digits[1]) << PyLong_SHIFT) | (int64_t)digits[0]))); } } break; } } #endif if ((sizeof(int64_t) <= sizeof(long))) { __PYX_VERIFY_RETURN_INT_EXC(int64_t, long, PyLong_AsLong(x)) #ifdef HAVE_LONG_LONG } else if ((sizeof(int64_t) <= sizeof(PY_LONG_LONG))) { __PYX_VERIFY_RETURN_INT_EXC(int64_t, PY_LONG_LONG, PyLong_AsLongLong(x)) #endif } } { int64_t val; int ret = -1; #if PY_VERSION_HEX >= 0x030d00A6 && !CYTHON_COMPILING_IN_LIMITED_API Py_ssize_t bytes_copied = PyLong_AsNativeBytes( x, &val, sizeof(val), Py_ASNATIVEBYTES_NATIVE_ENDIAN | (is_unsigned ? Py_ASNATIVEBYTES_UNSIGNED_BUFFER | Py_ASNATIVEBYTES_REJECT_NEGATIVE : 0)); if (unlikely(bytes_copied == -1)) { } else if (unlikely(bytes_copied > (Py_ssize_t) sizeof(val))) { goto raise_overflow; } else { ret = 0; } #elif PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray) int one = 1; int is_little = (int)*(unsigned char *)&one; unsigned char *bytes = (unsigned char *)&val; ret = _PyLong_AsByteArray((PyLongObject *)x, bytes, sizeof(val), is_little, !is_unsigned); #else PyObject *v; PyObject *stepval = NULL, *mask = NULL, *shift = NULL; int bits, remaining_bits, is_negative = 0; int chunk_size = (sizeof(long) < 8) ? 30 : 62; if (likely(PyLong_CheckExact(x))) { v = __Pyx_NewRef(x); } else { v = PyNumber_Long(x); if (unlikely(!v)) return (int64_t) -1; assert(PyLong_CheckExact(v)); } { int result = PyObject_RichCompareBool(v, Py_False, Py_LT); if (unlikely(result < 0)) { Py_DECREF(v); return (int64_t) -1; } is_negative = result == 1; } if (is_unsigned && unlikely(is_negative)) { Py_DECREF(v); goto raise_neg_overflow; } else if (is_negative) { stepval = PyNumber_Invert(v); Py_DECREF(v); if (unlikely(!stepval)) return (int64_t) -1; } else { stepval = v; } v = NULL; val = (int64_t) 0; mask = PyLong_FromLong((1L << chunk_size) - 1); if (unlikely(!mask)) goto done; shift = PyLong_FromLong(chunk_size); if (unlikely(!shift)) goto done; for (bits = 0; bits < (int) sizeof(int64_t) * 8 - chunk_size; bits += chunk_size) { PyObject *tmp, *digit; long idigit; digit = PyNumber_And(stepval, mask); if (unlikely(!digit)) goto done; idigit = PyLong_AsLong(digit); Py_DECREF(digit); if (unlikely(idigit < 0)) goto done; val |= ((int64_t) idigit) << bits; tmp = PyNumber_Rshift(stepval, shift); if (unlikely(!tmp)) goto done; Py_DECREF(stepval); stepval = tmp; } Py_DECREF(shift); shift = NULL; Py_DECREF(mask); mask = NULL; { long idigit = PyLong_AsLong(stepval); if (unlikely(idigit < 0)) goto done; remaining_bits = ((int) sizeof(int64_t) * 8) - bits - (is_unsigned ? 0 : 1); if (unlikely(idigit >= (1L << remaining_bits))) goto raise_overflow; val |= ((int64_t) idigit) << bits; } if (!is_unsigned) { if (unlikely(val & (((int64_t) 1) << (sizeof(int64_t) * 8 - 1)))) goto raise_overflow; if (is_negative) val = ~val; } ret = 0; done: Py_XDECREF(shift); Py_XDECREF(mask); Py_XDECREF(stepval); #endif if (unlikely(ret)) return (int64_t) -1; return val; } raise_overflow: PyErr_SetString(PyExc_OverflowError, "value too large to convert to int64_t"); return (int64_t) -1; raise_neg_overflow: PyErr_SetString(PyExc_OverflowError, "can't convert negative value to int64_t"); return (int64_t) -1; } /* CIntToPy */ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int64_t(int64_t value) { #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wconversion" #endif const int64_t neg_one = (int64_t) -1, const_zero = (int64_t) 0; #ifdef __Pyx_HAS_GCC_DIAGNOSTIC #pragma GCC diagnostic pop #endif const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(int64_t) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(int64_t) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); #ifdef HAVE_LONG_LONG } else if (sizeof(int64_t) <= sizeof(unsigned PY_LONG_LONG)) { return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); #endif } } else { if (sizeof(int64_t) <= sizeof(long)) { return PyInt_FromLong((long) value); #ifdef HAVE_LONG_LONG } else if (sizeof(int64_t) <= sizeof(PY_LONG_LONG)) { return PyLong_FromLongLong((PY_LONG_LONG) value); #endif } } { unsigned char *bytes = (unsigned char *)&value; #if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x030d00A4 if (is_unsigned) { return PyLong_FromUnsignedNativeBytes(bytes, sizeof(value), -1); } else { return PyLong_FromNativeBytes(bytes, sizeof(value), -1); } #elif !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000 int one = 1; int little = (int)*(unsigned char *)&one; return _PyLong_FromByteArray(bytes, sizeof(int64_t), little, !is_unsigned); #else int one = 1; int little = (int)*(unsigned char *)&one; PyObject *from_bytes, *result = NULL; PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL; from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes"); if (!from_bytes) return NULL; py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(int64_t)); if (!py_bytes) goto limited_bad; order_str = PyUnicode_FromString(little ? "little" : "big"); if (!order_str) goto limited_bad; arg_tuple = PyTuple_Pack(2, py_bytes, order_str); if (!arg_tuple) goto limited_bad; if (!is_unsigned) { kwds = PyDict_New(); if (!kwds) goto limited_bad; if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad; } result = PyObject_Call(from_bytes, arg_tuple, kwds); limited_bad: Py_XDECREF(kwds); Py_XDECREF(arg_tuple); Py_XDECREF(order_str); Py_XDECREF(py_bytes); Py_XDECREF(from_bytes); return result; #endif } } /* FormatTypeName */ #if CYTHON_COMPILING_IN_LIMITED_API static __Pyx_TypeName __Pyx_PyType_GetName(PyTypeObject* tp) { PyObject *name = __Pyx_PyObject_GetAttrStr((PyObject *)tp, __pyx_n_s_name_2); if (unlikely(name == NULL) || unlikely(!PyUnicode_Check(name))) { PyErr_Clear(); Py_XDECREF(name); name = __Pyx_NewRef(__pyx_n_s__330); } return name; } #endif /* FastTypeChecks */ #if CYTHON_COMPILING_IN_CPYTHON static int __Pyx_InBases(PyTypeObject *a, PyTypeObject *b) { while (a) { a = __Pyx_PyType_GetSlot(a, tp_base, PyTypeObject*); if (a == b) return 1; } return b == &PyBaseObject_Type; } static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b) { PyObject *mro; if (a == b) return 1; mro = a->tp_mro; if (likely(mro)) { Py_ssize_t i, n; n = PyTuple_GET_SIZE(mro); for (i = 0; i < n; i++) { if (PyTuple_GET_ITEM(mro, i) == (PyObject *)b) return 1; } return 0; } return __Pyx_InBases(a, b); } static CYTHON_INLINE int __Pyx_IsAnySubtype2(PyTypeObject *cls, PyTypeObject *a, PyTypeObject *b) { PyObject *mro; if (cls == a || cls == b) return 1; mro = cls->tp_mro; if (likely(mro)) { Py_ssize_t i, n; n = PyTuple_GET_SIZE(mro); for (i = 0; i < n; i++) { PyObject *base = PyTuple_GET_ITEM(mro, i); if (base == (PyObject *)a || base == (PyObject *)b) return 1; } return 0; } return __Pyx_InBases(cls, a) || __Pyx_InBases(cls, b); } #if PY_MAJOR_VERSION == 2 static int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject* exc_type2) { PyObject *exception, *value, *tb; int res; __Pyx_PyThreadState_declare __Pyx_PyThreadState_assign __Pyx_ErrFetch(&exception, &value, &tb); res = exc_type1 ? PyObject_IsSubclass(err, exc_type1) : 0; if (unlikely(res == -1)) { PyErr_WriteUnraisable(err); res = 0; } if (!res) { res = PyObject_IsSubclass(err, exc_type2); if (unlikely(res == -1)) { PyErr_WriteUnraisable(err); res = 0; } } __Pyx_ErrRestore(exception, value, tb); return res; } #else static CYTHON_INLINE int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject *exc_type2) { if (exc_type1) { return __Pyx_IsAnySubtype2((PyTypeObject*)err, (PyTypeObject*)exc_type1, (PyTypeObject*)exc_type2); } else { return __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type2); } } #endif static int __Pyx_PyErr_GivenExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) { Py_ssize_t i, n; assert(PyExceptionClass_Check(exc_type)); n = PyTuple_GET_SIZE(tuple); #if PY_MAJOR_VERSION >= 3 for (i=0; i<n; i++) { if (exc_type == PyTuple_GET_ITEM(tuple, i)) return 1; } #endif for (i=0; i<n; i++) { PyObject *t = PyTuple_GET_ITEM(tuple, i); #if PY_MAJOR_VERSION < 3 if (likely(exc_type == t)) return 1; #endif if (likely(PyExceptionClass_Check(t))) { if (__Pyx_inner_PyErr_GivenExceptionMatches2(exc_type, NULL, t)) return 1; } else { } } return 0; } static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject* exc_type) { if (likely(err == exc_type)) return 1; if (likely(PyExceptionClass_Check(err))) { if (likely(PyExceptionClass_Check(exc_type))) { return __Pyx_inner_PyErr_GivenExceptionMatches2(err, NULL, exc_type); } else if (likely(PyTuple_Check(exc_type))) { return __Pyx_PyErr_GivenExceptionMatchesTuple(err, exc_type); } else { } } return PyErr_GivenExceptionMatches(err, exc_type); } static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *exc_type1, PyObject *exc_type2) { assert(PyExceptionClass_Check(exc_type1)); assert(PyExceptionClass_Check(exc_type2)); if (likely(err == exc_type1 || err == exc_type2)) return 1; if (likely(PyExceptionClass_Check(err))) { return __Pyx_inner_PyErr_GivenExceptionMatches2(err, exc_type1, exc_type2); } return (PyErr_GivenExceptionMatches(err, exc_type1) || PyErr_GivenExceptionMatches(err, exc_type2)); } #endif /* CoroutineBase */ #include <frameobject.h> #if PY_VERSION_HEX >= 0x030b00a6 #ifndef Py_BUILD_CORE #define Py_BUILD_CORE 1 #endif #include "internal/pycore_frame.h" #endif #define __Pyx_Coroutine_Undelegate(gen) Py_CLEAR((gen)->yieldfrom) static int __Pyx_PyGen__FetchStopIterationValue(PyThreadState *__pyx_tstate, PyObject **pvalue) { PyObject *et, *ev, *tb; PyObject *value = NULL; CYTHON_UNUSED_VAR(__pyx_tstate); __Pyx_ErrFetch(&et, &ev, &tb); if (!et) { Py_XDECREF(tb); Py_XDECREF(ev); Py_INCREF(Py_None); *pvalue = Py_None; return 0; } if (likely(et == PyExc_StopIteration)) { if (!ev) { Py_INCREF(Py_None); value = Py_None; } #if PY_VERSION_HEX >= 0x030300A0 else if (likely(__Pyx_IS_TYPE(ev, (PyTypeObject*)PyExc_StopIteration))) { value = ((PyStopIterationObject *)ev)->value; Py_INCREF(value); Py_DECREF(ev); } #endif else if (unlikely(PyTuple_Check(ev))) { if (PyTuple_GET_SIZE(ev) >= 1) { #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS value = PyTuple_GET_ITEM(ev, 0); Py_INCREF(value); #else value = PySequence_ITEM(ev, 0); #endif } else { Py_INCREF(Py_None); value = Py_None; } Py_DECREF(ev); } else if (!__Pyx_TypeCheck(ev, (PyTypeObject*)PyExc_StopIteration)) { value = ev; } if (likely(value)) { Py_XDECREF(tb); Py_DECREF(et); *pvalue = value; return 0; } } else if (!__Pyx_PyErr_GivenExceptionMatches(et, PyExc_StopIteration)) { __Pyx_ErrRestore(et, ev, tb); return -1; } PyErr_NormalizeException(&et, &ev, &tb); if (unlikely(!PyObject_TypeCheck(ev, (PyTypeObject*)PyExc_StopIteration))) { __Pyx_ErrRestore(et, ev, tb); return -1; } Py_XDECREF(tb); Py_DECREF(et); #if PY_VERSION_HEX >= 0x030300A0 value = ((PyStopIterationObject *)ev)->value; Py_INCREF(value); Py_DECREF(ev); #else { PyObject* args = __Pyx_PyObject_GetAttrStr(ev, __pyx_n_s_args); Py_DECREF(ev); if (likely(args)) { value = PySequence_GetItem(args, 0); Py_DECREF(args); } if (unlikely(!value)) { __Pyx_ErrRestore(NULL, NULL, NULL); Py_INCREF(Py_None); value = Py_None; } } #endif *pvalue = value; return 0; } static CYTHON_INLINE void __Pyx_Coroutine_ExceptionClear(__Pyx_ExcInfoStruct *exc_state) { #if PY_VERSION_HEX >= 0x030B00a4 Py_CLEAR(exc_state->exc_value); #else PyObject *t, *v, *tb; t = exc_state->exc_type; v = exc_state->exc_value; tb = exc_state->exc_traceback; exc_state->exc_type = NULL; exc_state->exc_value = NULL; exc_state->exc_traceback = NULL; Py_XDECREF(t); Py_XDECREF(v); Py_XDECREF(tb); #endif } #define __Pyx_Coroutine_AlreadyRunningError(gen) (__Pyx__Coroutine_AlreadyRunningError(gen), (PyObject*)NULL) static void __Pyx__Coroutine_AlreadyRunningError(__pyx_CoroutineObject *gen) { const char *msg; CYTHON_MAYBE_UNUSED_VAR(gen); if ((0)) { #ifdef __Pyx_Coroutine_USED } else if (__Pyx_Coroutine_Check((PyObject*)gen)) { msg = "coroutine already executing"; #endif #ifdef __Pyx_AsyncGen_USED } else if (__Pyx_AsyncGen_CheckExact((PyObject*)gen)) { msg = "async generator already executing"; #endif } else { msg = "generator already executing"; } PyErr_SetString(PyExc_ValueError, msg); } #define __Pyx_Coroutine_NotStartedError(gen) (__Pyx__Coroutine_NotStartedError(gen), (PyObject*)NULL) static void __Pyx__Coroutine_NotStartedError(PyObject *gen) { const char *msg; CYTHON_MAYBE_UNUSED_VAR(gen); if ((0)) { #ifdef __Pyx_Coroutine_USED } else if (__Pyx_Coroutine_Check(gen)) { msg = "can't send non-None value to a just-started coroutine"; #endif #ifdef __Pyx_AsyncGen_USED } else if (__Pyx_AsyncGen_CheckExact(gen)) { msg = "can't send non-None value to a just-started async generator"; #endif } else { msg = "can't send non-None value to a just-started generator"; } PyErr_SetString(PyExc_TypeError, msg); } #define __Pyx_Coroutine_AlreadyTerminatedError(gen, value, closing) (__Pyx__Coroutine_AlreadyTerminatedError(gen, value, closing), (PyObject*)NULL) static void __Pyx__Coroutine_AlreadyTerminatedError(PyObject *gen, PyObject *value, int closing) { CYTHON_MAYBE_UNUSED_VAR(gen); CYTHON_MAYBE_UNUSED_VAR(closing); #ifdef __Pyx_Coroutine_USED if (!closing && __Pyx_Coroutine_Check(gen)) { PyErr_SetString(PyExc_RuntimeError, "cannot reuse already awaited coroutine"); } else #endif if (value) { #ifdef __Pyx_AsyncGen_USED if (__Pyx_AsyncGen_CheckExact(gen)) PyErr_SetNone(__Pyx_PyExc_StopAsyncIteration); else #endif PyErr_SetNone(PyExc_StopIteration); } } static PyObject *__Pyx_Coroutine_SendEx(__pyx_CoroutineObject *self, PyObject *value, int closing) { __Pyx_PyThreadState_declare PyThreadState *tstate; __Pyx_ExcInfoStruct *exc_state; PyObject *retval; assert(!self->is_running); if (unlikely(self->resume_label == 0)) { if (unlikely(value && value != Py_None)) { return __Pyx_Coroutine_NotStartedError((PyObject*)self); } } if (unlikely(self->resume_label == -1)) { return __Pyx_Coroutine_AlreadyTerminatedError((PyObject*)self, value, closing); } #if CYTHON_FAST_THREAD_STATE __Pyx_PyThreadState_assign tstate = __pyx_tstate; #else tstate = __Pyx_PyThreadState_Current; #endif exc_state = &self->gi_exc_state; if (exc_state->exc_value) { #if CYTHON_COMPILING_IN_PYPY #else PyObject *exc_tb; #if PY_VERSION_HEX >= 0x030B00a4 && !CYTHON_COMPILING_IN_CPYTHON exc_tb = PyException_GetTraceback(exc_state->exc_value); #elif PY_VERSION_HEX >= 0x030B00a4 exc_tb = ((PyBaseExceptionObject*) exc_state->exc_value)->traceback; #else exc_tb = exc_state->exc_traceback; #endif if (exc_tb) { PyTracebackObject *tb = (PyTracebackObject *) exc_tb; PyFrameObject *f = tb->tb_frame; assert(f->f_back == NULL); #if PY_VERSION_HEX >= 0x030B00A1 f->f_back = PyThreadState_GetFrame(tstate); #else Py_XINCREF(tstate->frame); f->f_back = tstate->frame; #endif #if PY_VERSION_HEX >= 0x030B00a4 && !CYTHON_COMPILING_IN_CPYTHON Py_DECREF(exc_tb); #endif } #endif } #if CYTHON_USE_EXC_INFO_STACK exc_state->previous_item = tstate->exc_info; tstate->exc_info = exc_state; #else if (exc_state->exc_type) { __Pyx_ExceptionSwap(&exc_state->exc_type, &exc_state->exc_value, &exc_state->exc_traceback); } else { __Pyx_Coroutine_ExceptionClear(exc_state); __Pyx_ExceptionSave(&exc_state->exc_type, &exc_state->exc_value, &exc_state->exc_traceback); } #endif self->is_running = 1; retval = self->body(self, tstate, value); self->is_running = 0; #if CYTHON_USE_EXC_INFO_STACK exc_state = &self->gi_exc_state; tstate->exc_info = exc_state->previous_item; exc_state->previous_item = NULL; __Pyx_Coroutine_ResetFrameBackpointer(exc_state); #endif return retval; } static CYTHON_INLINE void __Pyx_Coroutine_ResetFrameBackpointer(__Pyx_ExcInfoStruct *exc_state) { #if CYTHON_COMPILING_IN_PYPY CYTHON_UNUSED_VAR(exc_state); #else PyObject *exc_tb; #if PY_VERSION_HEX >= 0x030B00a4 if (!exc_state->exc_value) return; exc_tb = PyException_GetTraceback(exc_state->exc_value); #else exc_tb = exc_state->exc_traceback; #endif if (likely(exc_tb)) { PyTracebackObject *tb = (PyTracebackObject *) exc_tb; PyFrameObject *f = tb->tb_frame; Py_CLEAR(f->f_back); #if PY_VERSION_HEX >= 0x030B00a4 Py_DECREF(exc_tb); #endif } #endif } static CYTHON_INLINE PyObject *__Pyx_Coroutine_MethodReturn(PyObject* gen, PyObject *retval) { CYTHON_MAYBE_UNUSED_VAR(gen); if (unlikely(!retval)) { __Pyx_PyThreadState_declare __Pyx_PyThreadState_assign if (!__Pyx_PyErr_Occurred()) { PyObject *exc = PyExc_StopIteration; #ifdef __Pyx_AsyncGen_USED if (__Pyx_AsyncGen_CheckExact(gen)) exc = __Pyx_PyExc_StopAsyncIteration; #endif __Pyx_PyErr_SetNone(exc); } } return retval; } #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03030000 && (defined(__linux__) || PY_VERSION_HEX >= 0x030600B3) static CYTHON_INLINE PyObject *__Pyx_PyGen_Send(PyGenObject *gen, PyObject *arg) { #if PY_VERSION_HEX <= 0x030A00A1 return _PyGen_Send(gen, arg); #else PyObject *result; if (PyIter_Send((PyObject*)gen, arg ? arg : Py_None, &result) == PYGEN_RETURN) { if (PyAsyncGen_CheckExact(gen)) { assert(result == Py_None); PyErr_SetNone(PyExc_StopAsyncIteration); } else if (result == Py_None) { PyErr_SetNone(PyExc_StopIteration); } else { #if PY_VERSION_HEX < 0x030d00A1 _PyGen_SetStopIterationValue(result); #else if (!PyTuple_Check(result) && !PyExceptionInstance_Check(result)) { PyErr_SetObject(PyExc_StopIteration, result); } else { PyObject *exc = __Pyx_PyObject_CallOneArg(PyExc_StopIteration, result); if (likely(exc != NULL)) { PyErr_SetObject(PyExc_StopIteration, exc); Py_DECREF(exc); } } #endif } Py_DECREF(result); result = NULL; } return result; #endif } #endif static CYTHON_INLINE PyObject *__Pyx_Coroutine_FinishDelegation(__pyx_CoroutineObject *gen) { PyObject *ret; PyObject *val = NULL; __Pyx_Coroutine_Undelegate(gen); __Pyx_PyGen__FetchStopIterationValue(__Pyx_PyThreadState_Current, &val); ret = __Pyx_Coroutine_SendEx(gen, val, 0); Py_XDECREF(val); return ret; } static PyObject *__Pyx_Coroutine_Send(PyObject *self, PyObject *value) { PyObject *retval; __pyx_CoroutineObject *gen = (__pyx_CoroutineObject*) self; PyObject *yf = gen->yieldfrom; if (unlikely(gen->is_running)) return __Pyx_Coroutine_AlreadyRunningError(gen); if (yf) { PyObject *ret; gen->is_running = 1; #ifdef __Pyx_Generator_USED if (__Pyx_Generator_CheckExact(yf)) { ret = __Pyx_Coroutine_Send(yf, value); } else #endif #ifdef __Pyx_Coroutine_USED if (__Pyx_Coroutine_Check(yf)) { ret = __Pyx_Coroutine_Send(yf, value); } else #endif #ifdef __Pyx_AsyncGen_USED if (__pyx_PyAsyncGenASend_CheckExact(yf)) { ret = __Pyx_async_gen_asend_send(yf, value); } else #endif #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03030000 && (defined(__linux__) || PY_VERSION_HEX >= 0x030600B3) if (PyGen_CheckExact(yf)) { ret = __Pyx_PyGen_Send((PyGenObject*)yf, value == Py_None ? NULL : value); } else #endif #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03050000 && defined(PyCoro_CheckExact) && (defined(__linux__) || PY_VERSION_HEX >= 0x030600B3) if (PyCoro_CheckExact(yf)) { ret = __Pyx_PyGen_Send((PyGenObject*)yf, value == Py_None ? NULL : value); } else #endif { if (value == Py_None) ret = __Pyx_PyObject_GetIterNextFunc(yf)(yf); else ret = __Pyx_PyObject_CallMethod1(yf, __pyx_n_s_send, value); } gen->is_running = 0; if (likely(ret)) { return ret; } retval = __Pyx_Coroutine_FinishDelegation(gen); } else { retval = __Pyx_Coroutine_SendEx(gen, value, 0); } return __Pyx_Coroutine_MethodReturn(self, retval); } static int __Pyx_Coroutine_CloseIter(__pyx_CoroutineObject *gen, PyObject *yf) { PyObject *retval = NULL; int err = 0; #ifdef __Pyx_Generator_USED if (__Pyx_Generator_CheckExact(yf)) { retval = __Pyx_Coroutine_Close(yf); if (!retval) return -1; } else #endif #ifdef __Pyx_Coroutine_USED if (__Pyx_Coroutine_Check(yf)) { retval = __Pyx_Coroutine_Close(yf); if (!retval) return -1; } else if (__Pyx_CoroutineAwait_CheckExact(yf)) { retval = __Pyx_CoroutineAwait_Close((__pyx_CoroutineAwaitObject*)yf, NULL); if (!retval) return -1; } else #endif #ifdef __Pyx_AsyncGen_USED if (__pyx_PyAsyncGenASend_CheckExact(yf)) { retval = __Pyx_async_gen_asend_close(yf, NULL); } else if (__pyx_PyAsyncGenAThrow_CheckExact(yf)) { retval = __Pyx_async_gen_athrow_close(yf, NULL); } else #endif { PyObject *meth; gen->is_running = 1; meth = __Pyx_PyObject_GetAttrStrNoError(yf, __pyx_n_s_close); if (unlikely(!meth)) { if (unlikely(PyErr_Occurred())) { PyErr_WriteUnraisable(yf); } } else { retval = __Pyx_PyObject_CallNoArg(meth); Py_DECREF(meth); if (unlikely(!retval)) err = -1; } gen->is_running = 0; } Py_XDECREF(retval); return err; } static PyObject *__Pyx_Generator_Next(PyObject *self) { __pyx_CoroutineObject *gen = (__pyx_CoroutineObject*) self; PyObject *yf = gen->yieldfrom; if (unlikely(gen->is_running)) return __Pyx_Coroutine_AlreadyRunningError(gen); if (yf) { PyObject *ret; gen->is_running = 1; #ifdef __Pyx_Generator_USED if (__Pyx_Generator_CheckExact(yf)) { ret = __Pyx_Generator_Next(yf); } else #endif #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03030000 && (defined(__linux__) || PY_VERSION_HEX >= 0x030600B3) if (PyGen_CheckExact(yf)) { ret = __Pyx_PyGen_Send((PyGenObject*)yf, NULL); } else #endif #ifdef __Pyx_Coroutine_USED if (__Pyx_Coroutine_Check(yf)) { ret = __Pyx_Coroutine_Send(yf, Py_None); } else #endif ret = __Pyx_PyObject_GetIterNextFunc(yf)(yf); gen->is_running = 0; if (likely(ret)) { return ret; } return __Pyx_Coroutine_FinishDelegation(gen); } return __Pyx_Coroutine_SendEx(gen, Py_None, 0); } static PyObject *__Pyx_Coroutine_Close_Method(PyObject *self, PyObject *arg) { CYTHON_UNUSED_VAR(arg); return __Pyx_Coroutine_Close(self); } static PyObject *__Pyx_Coroutine_Close(PyObject *self) { __pyx_CoroutineObject *gen = (__pyx_CoroutineObject *) self; PyObject *retval, *raised_exception; PyObject *yf = gen->yieldfrom; int err = 0; if (unlikely(gen->is_running)) return __Pyx_Coroutine_AlreadyRunningError(gen); if (yf) { Py_INCREF(yf); err = __Pyx_Coroutine_CloseIter(gen, yf); __Pyx_Coroutine_Undelegate(gen); Py_DECREF(yf); } if (err == 0) PyErr_SetNone(PyExc_GeneratorExit); retval = __Pyx_Coroutine_SendEx(gen, NULL, 1); if (unlikely(retval)) { const char *msg; Py_DECREF(retval); if ((0)) { #ifdef __Pyx_Coroutine_USED } else if (__Pyx_Coroutine_Check(self)) { msg = "coroutine ignored GeneratorExit"; #endif #ifdef __Pyx_AsyncGen_USED } else if (__Pyx_AsyncGen_CheckExact(self)) { #if PY_VERSION_HEX < 0x03060000 msg = "async generator ignored GeneratorExit - might require Python 3.6+ finalisation (PEP 525)"; #else msg = "async generator ignored GeneratorExit"; #endif #endif } else { msg = "generator ignored GeneratorExit"; } PyErr_SetString(PyExc_RuntimeError, msg); return NULL; } raised_exception = PyErr_Occurred(); if (likely(!raised_exception || __Pyx_PyErr_GivenExceptionMatches2(raised_exception, PyExc_GeneratorExit, PyExc_StopIteration))) { if (raised_exception) PyErr_Clear(); Py_INCREF(Py_None); return Py_None; } return NULL; } static PyObject *__Pyx__Coroutine_Throw(PyObject *self, PyObject *typ, PyObject *val, PyObject *tb, PyObject *args, int close_on_genexit) { __pyx_CoroutineObject *gen = (__pyx_CoroutineObject *) self; PyObject *yf = gen->yieldfrom; if (unlikely(gen->is_running)) return __Pyx_Coroutine_AlreadyRunningError(gen); if (yf) { PyObject *ret; Py_INCREF(yf); if (__Pyx_PyErr_GivenExceptionMatches(typ, PyExc_GeneratorExit) && close_on_genexit) { int err = __Pyx_Coroutine_CloseIter(gen, yf); Py_DECREF(yf); __Pyx_Coroutine_Undelegate(gen); if (err < 0) return __Pyx_Coroutine_MethodReturn(self, __Pyx_Coroutine_SendEx(gen, NULL, 0)); goto throw_here; } gen->is_running = 1; if (0 #ifdef __Pyx_Generator_USED || __Pyx_Generator_CheckExact(yf) #endif #ifdef __Pyx_Coroutine_USED || __Pyx_Coroutine_Check(yf) #endif ) { ret = __Pyx__Coroutine_Throw(yf, typ, val, tb, args, close_on_genexit); #ifdef __Pyx_Coroutine_USED } else if (__Pyx_CoroutineAwait_CheckExact(yf)) { ret = __Pyx__Coroutine_Throw(((__pyx_CoroutineAwaitObject*)yf)->coroutine, typ, val, tb, args, close_on_genexit); #endif } else { PyObject *meth = __Pyx_PyObject_GetAttrStrNoError(yf, __pyx_n_s_throw); if (unlikely(!meth)) { Py_DECREF(yf); if (unlikely(PyErr_Occurred())) { gen->is_running = 0; return NULL; } __Pyx_Coroutine_Undelegate(gen); gen->is_running = 0; goto throw_here; } if (likely(args)) { ret = __Pyx_PyObject_Call(meth, args, NULL); } else { PyObject *cargs[4] = {NULL, typ, val, tb}; ret = __Pyx_PyObject_FastCall(meth, cargs+1, 3 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET); } Py_DECREF(meth); } gen->is_running = 0; Py_DECREF(yf); if (!ret) { ret = __Pyx_Coroutine_FinishDelegation(gen); } return __Pyx_Coroutine_MethodReturn(self, ret); } throw_here: __Pyx_Raise(typ, val, tb, NULL); return __Pyx_Coroutine_MethodReturn(self, __Pyx_Coroutine_SendEx(gen, NULL, 0)); } static PyObject *__Pyx_Coroutine_Throw(PyObject *self, PyObject *args) { PyObject *typ; PyObject *val = NULL; PyObject *tb = NULL; if (unlikely(!PyArg_UnpackTuple(args, (char *)"throw", 1, 3, &typ, &val, &tb))) return NULL; return __Pyx__Coroutine_Throw(self, typ, val, tb, args, 1); } static CYTHON_INLINE int __Pyx_Coroutine_traverse_excstate(__Pyx_ExcInfoStruct *exc_state, visitproc visit, void *arg) { #if PY_VERSION_HEX >= 0x030B00a4 Py_VISIT(exc_state->exc_value); #else Py_VISIT(exc_state->exc_type); Py_VISIT(exc_state->exc_value); Py_VISIT(exc_state->exc_traceback); #endif return 0; } static int __Pyx_Coroutine_traverse(__pyx_CoroutineObject *gen, visitproc visit, void *arg) { Py_VISIT(gen->closure); Py_VISIT(gen->classobj); Py_VISIT(gen->yieldfrom); return __Pyx_Coroutine_traverse_excstate(&gen->gi_exc_state, visit, arg); } static int __Pyx_Coroutine_clear(PyObject *self) { __pyx_CoroutineObject *gen = (__pyx_CoroutineObject *) self; Py_CLEAR(gen->closure); Py_CLEAR(gen->classobj); Py_CLEAR(gen->yieldfrom); __Pyx_Coroutine_ExceptionClear(&gen->gi_exc_state); #ifdef __Pyx_AsyncGen_USED if (__Pyx_AsyncGen_CheckExact(self)) { Py_CLEAR(((__pyx_PyAsyncGenObject*)gen)->ag_finalizer); } #endif Py_CLEAR(gen->gi_code); Py_CLEAR(gen->gi_frame); Py_CLEAR(gen->gi_name); Py_CLEAR(gen->gi_qualname); Py_CLEAR(gen->gi_modulename); return 0; } static void __Pyx_Coroutine_dealloc(PyObject *self) { __pyx_CoroutineObject *gen = (__pyx_CoroutineObject *) self; PyObject_GC_UnTrack(gen); if (gen->gi_weakreflist != NULL) PyObject_ClearWeakRefs(self); if (gen->resume_label >= 0) { PyObject_GC_Track(self); #if PY_VERSION_HEX >= 0x030400a1 && CYTHON_USE_TP_FINALIZE if (unlikely(PyObject_CallFinalizerFromDealloc(self))) #else Py_TYPE(gen)->tp_del(self); if (unlikely(Py_REFCNT(self) > 0)) #endif { return; } PyObject_GC_UnTrack(self); } #ifdef __Pyx_AsyncGen_USED if (__Pyx_AsyncGen_CheckExact(self)) { /* We have to handle this case for asynchronous generators right here, because this code has to be between UNTRACK and GC_Del. */ Py_CLEAR(((__pyx_PyAsyncGenObject*)self)->ag_finalizer); } #endif __Pyx_Coroutine_clear(self); __Pyx_PyHeapTypeObject_GC_Del(gen); } static void __Pyx_Coroutine_del(PyObject *self) { PyObject *error_type, *error_value, *error_traceback; __pyx_CoroutineObject *gen = (__pyx_CoroutineObject *) self; __Pyx_PyThreadState_declare if (gen->resume_label < 0) { return; } #if !CYTHON_USE_TP_FINALIZE assert(self->ob_refcnt == 0); __Pyx_SET_REFCNT(self, 1); #endif __Pyx_PyThreadState_assign __Pyx_ErrFetch(&error_type, &error_value, &error_traceback); #ifdef __Pyx_AsyncGen_USED if (__Pyx_AsyncGen_CheckExact(self)) { __pyx_PyAsyncGenObject *agen = (__pyx_PyAsyncGenObject*)self; PyObject *finalizer = agen->ag_finalizer; if (finalizer && !agen->ag_closed) { PyObject *res = __Pyx_PyObject_CallOneArg(finalizer, self); if (unlikely(!res)) { PyErr_WriteUnraisable(self); } else { Py_DECREF(res); } __Pyx_ErrRestore(error_type, error_value, error_traceback); return; } } #endif if (unlikely(gen->resume_label == 0 && !error_value)) { #ifdef __Pyx_Coroutine_USED #ifdef __Pyx_Generator_USED if (!__Pyx_Generator_CheckExact(self)) #endif { PyObject_GC_UnTrack(self); #if PY_MAJOR_VERSION >= 3 || defined(PyErr_WarnFormat) if (unlikely(PyErr_WarnFormat(PyExc_RuntimeWarning, 1, "coroutine '%.50S' was never awaited", gen->gi_qualname) < 0)) PyErr_WriteUnraisable(self); #else {PyObject *msg; char *cmsg; #if CYTHON_COMPILING_IN_PYPY msg = NULL; cmsg = (char*) "coroutine was never awaited"; #else char *cname; PyObject *qualname; qualname = gen->gi_qualname; cname = PyString_AS_STRING(qualname); msg = PyString_FromFormat("coroutine '%.50s' was never awaited", cname); if (unlikely(!msg)) { PyErr_Clear(); cmsg = (char*) "coroutine was never awaited"; } else { cmsg = PyString_AS_STRING(msg); } #endif if (unlikely(PyErr_WarnEx(PyExc_RuntimeWarning, cmsg, 1) < 0)) PyErr_WriteUnraisable(self); Py_XDECREF(msg);} #endif PyObject_GC_Track(self); } #endif } else { PyObject *res = __Pyx_Coroutine_Close(self); if (unlikely(!res)) { if (PyErr_Occurred()) PyErr_WriteUnraisable(self); } else { Py_DECREF(res); } } __Pyx_ErrRestore(error_type, error_value, error_traceback); #if !CYTHON_USE_TP_FINALIZE assert(Py_REFCNT(self) > 0); if (likely(--self->ob_refcnt == 0)) { return; } { Py_ssize_t refcnt = Py_REFCNT(self); _Py_NewReference(self); __Pyx_SET_REFCNT(self, refcnt); } #if CYTHON_COMPILING_IN_CPYTHON assert(PyType_IS_GC(Py_TYPE(self)) && _Py_AS_GC(self)->gc.gc_refs != _PyGC_REFS_UNTRACKED); _Py_DEC_REFTOTAL; #endif #ifdef COUNT_ALLOCS --Py_TYPE(self)->tp_frees; --Py_TYPE(self)->tp_allocs; #endif #endif } static PyObject * __Pyx_Coroutine_get_name(__pyx_CoroutineObject *self, void *context) { PyObject *name = self->gi_name; CYTHON_UNUSED_VAR(context); if (unlikely(!name)) name = Py_None; Py_INCREF(name); return name; } static int __Pyx_Coroutine_set_name(__pyx_CoroutineObject *self, PyObject *value, void *context) { CYTHON_UNUSED_VAR(context); #if PY_MAJOR_VERSION >= 3 if (unlikely(value == NULL || !PyUnicode_Check(value))) #else if (unlikely(value == NULL || !PyString_Check(value))) #endif { PyErr_SetString(PyExc_TypeError, "__name__ must be set to a string object"); return -1; } Py_INCREF(value); __Pyx_Py_XDECREF_SET(self->gi_name, value); return 0; } static PyObject * __Pyx_Coroutine_get_qualname(__pyx_CoroutineObject *self, void *context) { PyObject *name = self->gi_qualname; CYTHON_UNUSED_VAR(context); if (unlikely(!name)) name = Py_None; Py_INCREF(name); return name; } static int __Pyx_Coroutine_set_qualname(__pyx_CoroutineObject *self, PyObject *value, void *context) { CYTHON_UNUSED_VAR(context); #if PY_MAJOR_VERSION >= 3 if (unlikely(value == NULL || !PyUnicode_Check(value))) #else if (unlikely(value == NULL || !PyString_Check(value))) #endif { PyErr_SetString(PyExc_TypeError, "__qualname__ must be set to a string object"); return -1; } Py_INCREF(value); __Pyx_Py_XDECREF_SET(self->gi_qualname, value); return 0; } static PyObject * __Pyx_Coroutine_get_frame(__pyx_CoroutineObject *self, void *context) { PyObject *frame = self->gi_frame; CYTHON_UNUSED_VAR(context); if (!frame) { if (unlikely(!self->gi_code)) { Py_RETURN_NONE; } frame = (PyObject *) PyFrame_New( PyThreadState_Get(), /*PyThreadState *tstate,*/ (PyCodeObject*) self->gi_code, /*PyCodeObject *code,*/ __pyx_d, /*PyObject *globals,*/ 0 /*PyObject *locals*/ ); if (unlikely(!frame)) return NULL; self->gi_frame = frame; } Py_INCREF(frame); return frame; } static __pyx_CoroutineObject *__Pyx__Coroutine_New( PyTypeObject* type, __pyx_coroutine_body_t body, PyObject *code, PyObject *closure, PyObject *name, PyObject *qualname, PyObject *module_name) { __pyx_CoroutineObject *gen = PyObject_GC_New(__pyx_CoroutineObject, type); if (unlikely(!gen)) return NULL; return __Pyx__Coroutine_NewInit(gen, body, code, closure, name, qualname, module_name); } static __pyx_CoroutineObject *__Pyx__Coroutine_NewInit( __pyx_CoroutineObject *gen, __pyx_coroutine_body_t body, PyObject *code, PyObject *closure, PyObject *name, PyObject *qualname, PyObject *module_name) { gen->body = body; gen->closure = closure; Py_XINCREF(closure); gen->is_running = 0; gen->resume_label = 0; gen->classobj = NULL; gen->yieldfrom = NULL; #if PY_VERSION_HEX >= 0x030B00a4 gen->gi_exc_state.exc_value = NULL; #else gen->gi_exc_state.exc_type = NULL; gen->gi_exc_state.exc_value = NULL; gen->gi_exc_state.exc_traceback = NULL; #endif #if CYTHON_USE_EXC_INFO_STACK gen->gi_exc_state.previous_item = NULL; #endif gen->gi_weakreflist = NULL; Py_XINCREF(qualname); gen->gi_qualname = qualname; Py_XINCREF(name); gen->gi_name = name; Py_XINCREF(module_name); gen->gi_modulename = module_name; Py_XINCREF(code); gen->gi_code = code; gen->gi_frame = NULL; PyObject_GC_Track(gen); return gen; } /* PatchModuleWithCoroutine */ static PyObject* __Pyx_Coroutine_patch_module(PyObject* module, const char* py_code) { #if defined(__Pyx_Generator_USED) || defined(__Pyx_Coroutine_USED) int result; PyObject *globals, *result_obj; globals = PyDict_New(); if (unlikely(!globals)) goto ignore; result = PyDict_SetItemString(globals, "_cython_coroutine_type", #ifdef __Pyx_Coroutine_USED (PyObject*)__pyx_CoroutineType); #else Py_None); #endif if (unlikely(result < 0)) goto ignore; result = PyDict_SetItemString(globals, "_cython_generator_type", #ifdef __Pyx_Generator_USED (PyObject*)__pyx_GeneratorType); #else Py_None); #endif if (unlikely(result < 0)) goto ignore; if (unlikely(PyDict_SetItemString(globals, "_module", module) < 0)) goto ignore; if (unlikely(PyDict_SetItemString(globals, "__builtins__", __pyx_b) < 0)) goto ignore; result_obj = PyRun_String(py_code, Py_file_input, globals, globals); if (unlikely(!result_obj)) goto ignore; Py_DECREF(result_obj); Py_DECREF(globals); return module; ignore: Py_XDECREF(globals); PyErr_WriteUnraisable(module); if (unlikely(PyErr_WarnEx(PyExc_RuntimeWarning, "Cython module failed to patch module with custom type", 1) < 0)) { Py_DECREF(module); module = NULL; } #else py_code++; #endif return module; } /* PatchGeneratorABC */ #ifndef CYTHON_REGISTER_ABCS #define CYTHON_REGISTER_ABCS 1 #endif #if defined(__Pyx_Generator_USED) || defined(__Pyx_Coroutine_USED) static PyObject* __Pyx_patch_abc_module(PyObject *module); static PyObject* __Pyx_patch_abc_module(PyObject *module) { module = __Pyx_Coroutine_patch_module( module, "" "if _cython_generator_type is not None:\n" " try: Generator = _module.Generator\n" " except AttributeError: pass\n" " else: Generator.register(_cython_generator_type)\n" "if _cython_coroutine_type is not None:\n" " try: Coroutine = _module.Coroutine\n" " except AttributeError: pass\n" " else: Coroutine.register(_cython_coroutine_type)\n" ); return module; } #endif static int __Pyx_patch_abc(void) { #if defined(__Pyx_Generator_USED) || defined(__Pyx_Coroutine_USED) static int abc_patched = 0; if (CYTHON_REGISTER_ABCS && !abc_patched) { PyObject *module; module = PyImport_ImportModule((PY_MAJOR_VERSION >= 3) ? "collections.abc" : "collections"); if (unlikely(!module)) { PyErr_WriteUnraisable(NULL); if (unlikely(PyErr_WarnEx(PyExc_RuntimeWarning, ((PY_MAJOR_VERSION >= 3) ? "Cython module failed to register with collections.abc module" : "Cython module failed to register with collections module"), 1) < 0)) { return -1; } } else { module = __Pyx_patch_abc_module(module); abc_patched = 1; if (unlikely(!module)) return -1; Py_DECREF(module); } module = PyImport_ImportModule("backports_abc"); if (module) { module = __Pyx_patch_abc_module(module); Py_XDECREF(module); } if (!module) { PyErr_Clear(); } } #else if ((0)) __Pyx_Coroutine_patch_module(NULL, NULL); #endif return 0; } /* Generator */ static PyMethodDef __pyx_Generator_methods[] = { {"send", (PyCFunction) __Pyx_Coroutine_Send, METH_O, (char*) PyDoc_STR("send(arg) -> send 'arg' into generator,\nreturn next yielded value or raise StopIteration.")}, {"throw", (PyCFunction) __Pyx_Coroutine_Throw, METH_VARARGS, (char*) PyDoc_STR("throw(typ[,val[,tb]]) -> raise exception in generator,\nreturn next yielded value or raise StopIteration.")}, {"close", (PyCFunction) __Pyx_Coroutine_Close_Method, METH_NOARGS, (char*) PyDoc_STR("close() -> raise GeneratorExit inside generator.")}, {0, 0, 0, 0} }; static PyMemberDef __pyx_Generator_memberlist[] = { {(char *) "gi_running", T_BOOL, offsetof(__pyx_CoroutineObject, is_running), READONLY, NULL}, {(char*) "gi_yieldfrom", T_OBJECT, offsetof(__pyx_CoroutineObject, yieldfrom), READONLY, (char*) PyDoc_STR("object being iterated by 'yield from', or None")}, {(char*) "gi_code", T_OBJECT, offsetof(__pyx_CoroutineObject, gi_code), READONLY, NULL}, {(char *) "__module__", T_OBJECT, offsetof(__pyx_CoroutineObject, gi_modulename), 0, 0}, #if CYTHON_USE_TYPE_SPECS {(char *) "__weaklistoffset__", T_PYSSIZET, offsetof(__pyx_CoroutineObject, gi_weakreflist), READONLY, 0}, #endif {0, 0, 0, 0, 0} }; static PyGetSetDef __pyx_Generator_getsets[] = { {(char *) "__name__", (getter)__Pyx_Coroutine_get_name, (setter)__Pyx_Coroutine_set_name, (char*) PyDoc_STR("name of the generator"), 0}, {(char *) "__qualname__", (getter)__Pyx_Coroutine_get_qualname, (setter)__Pyx_Coroutine_set_qualname, (char*) PyDoc_STR("qualified name of the generator"), 0}, {(char *) "gi_frame", (getter)__Pyx_Coroutine_get_frame, NULL, (char*) PyDoc_STR("Frame of the generator"), 0}, {0, 0, 0, 0, 0} }; #if CYTHON_USE_TYPE_SPECS static PyType_Slot __pyx_GeneratorType_slots[] = { {Py_tp_dealloc, (void *)__Pyx_Coroutine_dealloc}, {Py_tp_traverse, (void *)__Pyx_Coroutine_traverse}, {Py_tp_iter, (void *)PyObject_SelfIter}, {Py_tp_iternext, (void *)__Pyx_Generator_Next}, {Py_tp_methods, (void *)__pyx_Generator_methods}, {Py_tp_members, (void *)__pyx_Generator_memberlist}, {Py_tp_getset, (void *)__pyx_Generator_getsets}, {Py_tp_getattro, (void *) __Pyx_PyObject_GenericGetAttrNoDict}, #if CYTHON_USE_TP_FINALIZE {Py_tp_finalize, (void *)__Pyx_Coroutine_del}, #endif {0, 0}, }; static PyType_Spec __pyx_GeneratorType_spec = { __PYX_TYPE_MODULE_PREFIX "generator", sizeof(__pyx_CoroutineObject), 0, Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC | Py_TPFLAGS_HAVE_FINALIZE, __pyx_GeneratorType_slots }; #else static PyTypeObject __pyx_GeneratorType_type = { PyVarObject_HEAD_INIT(0, 0) __PYX_TYPE_MODULE_PREFIX "generator", sizeof(__pyx_CoroutineObject), 0, (destructor) __Pyx_Coroutine_dealloc, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC | Py_TPFLAGS_HAVE_FINALIZE, 0, (traverseproc) __Pyx_Coroutine_traverse, 0, 0, offsetof(__pyx_CoroutineObject, gi_weakreflist), 0, (iternextfunc) __Pyx_Generator_Next, __pyx_Generator_methods, __pyx_Generator_memberlist, __pyx_Generator_getsets, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, #if CYTHON_USE_TP_FINALIZE 0, #else __Pyx_Coroutine_del, #endif 0, #if CYTHON_USE_TP_FINALIZE __Pyx_Coroutine_del, #elif PY_VERSION_HEX >= 0x030400a1 0, #endif #if PY_VERSION_HEX >= 0x030800b1 && (!CYTHON_COMPILING_IN_PYPY || PYPY_VERSION_NUM >= 0x07030800) 0, #endif #if __PYX_NEED_TP_PRINT_SLOT 0, #endif #if PY_VERSION_HEX >= 0x030C0000 0, #endif #if PY_VERSION_HEX >= 0x030d00A4 0, #endif #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX >= 0x03090000 && PY_VERSION_HEX < 0x030a0000 0, #endif }; #endif static int __pyx_Generator_init(PyObject *module) { #if CYTHON_USE_TYPE_SPECS __pyx_GeneratorType = __Pyx_FetchCommonTypeFromSpec(module, &__pyx_GeneratorType_spec, NULL); #else CYTHON_UNUSED_VAR(module); __pyx_GeneratorType_type.tp_getattro = __Pyx_PyObject_GenericGetAttrNoDict; __pyx_GeneratorType_type.tp_iter = PyObject_SelfIter; __pyx_GeneratorType = __Pyx_FetchCommonType(&__pyx_GeneratorType_type); #endif if (unlikely(!__pyx_GeneratorType)) { return -1; } return 0; } /* CheckBinaryVersion */ static unsigned long __Pyx_get_runtime_version(void) { #if __PYX_LIMITED_VERSION_HEX >= 0x030B00A4 return Py_Version & ~0xFFUL; #else const char* rt_version = Py_GetVersion(); unsigned long version = 0; unsigned long factor = 0x01000000UL; unsigned int digit = 0; int i = 0; while (factor) { while ('0' <= rt_version[i] && rt_version[i] <= '9') { digit = digit * 10 + (unsigned int) (rt_version[i] - '0'); ++i; } version += factor * digit; if (rt_version[i] != '.') break; digit = 0; factor >>= 8; ++i; } return version; #endif } static int __Pyx_check_binary_version(unsigned long ct_version, unsigned long rt_version, int allow_newer) { const unsigned long MAJOR_MINOR = 0xFFFF0000UL; if ((rt_version & MAJOR_MINOR) == (ct_version & MAJOR_MINOR)) return 0; if (likely(allow_newer && (rt_version & MAJOR_MINOR) > (ct_version & MAJOR_MINOR))) return 1; { char message[200]; PyOS_snprintf(message, sizeof(message), "compile time Python version %d.%d " "of module '%.100s' " "%s " "runtime version %d.%d", (int) (ct_version >> 24), (int) ((ct_version >> 16) & 0xFF), __Pyx_MODULE_NAME, (allow_newer) ? "was newer than" : "does not match", (int) (rt_version >> 24), (int) ((rt_version >> 16) & 0xFF) ); return PyErr_WarnEx(NULL, message, 1); } } /* FunctionImport */ #ifndef __PYX_HAVE_RT_ImportFunction_3_0_11 #define __PYX_HAVE_RT_ImportFunction_3_0_11 static int __Pyx_ImportFunction_3_0_11(PyObject *module, const char *funcname, void (**f)(void), const char *sig) { PyObject *d = 0; PyObject *cobj = 0; union { void (*fp)(void); void *p; } tmp; d = PyObject_GetAttrString(module, (char *)"__pyx_capi__"); if (!d) goto bad; cobj = PyDict_GetItemString(d, funcname); if (!cobj) { PyErr_Format(PyExc_ImportError, "%.200s does not export expected C function %.200s", PyModule_GetName(module), funcname); goto bad; } if (!PyCapsule_IsValid(cobj, sig)) { PyErr_Format(PyExc_TypeError, "C function %.200s.%.200s has wrong signature (expected %.500s, got %.500s)", PyModule_GetName(module), funcname, sig, PyCapsule_GetName(cobj)); goto bad; } tmp.p = PyCapsule_GetPointer(cobj, sig); *f = tmp.fp; if (!(*f)) goto bad; Py_DECREF(d); return 0; bad: Py_XDECREF(d); return -1; } #endif /* InitStrings */ #if PY_MAJOR_VERSION >= 3 static int __Pyx_InitString(__Pyx_StringTabEntry t, PyObject **str) { if (t.is_unicode | t.is_str) { if (t.intern) { *str = PyUnicode_InternFromString(t.s); } else if (t.encoding) { *str = PyUnicode_Decode(t.s, t.n - 1, t.encoding, NULL); } else { *str = PyUnicode_FromStringAndSize(t.s, t.n - 1); } } else { *str = PyBytes_FromStringAndSize(t.s, t.n - 1); } if (!*str) return -1; if (PyObject_Hash(*str) == -1) return -1; return 0; } #endif static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { while (t->p) { #if PY_MAJOR_VERSION >= 3 __Pyx_InitString(*t, t->p); #else if (t->is_unicode) { *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL); } else if (t->intern) { *t->p = PyString_InternFromString(t->s); } else { *t->p = PyString_FromStringAndSize(t->s, t->n - 1); } if (!*t->p) return -1; if (PyObject_Hash(*t->p) == -1) return -1; #endif ++t; } return 0; } #include <string.h> static CYTHON_INLINE Py_ssize_t __Pyx_ssize_strlen(const char *s) { size_t len = strlen(s); if (unlikely(len > (size_t) PY_SSIZE_T_MAX)) { PyErr_SetString(PyExc_OverflowError, "byte string is too long"); return -1; } return (Py_ssize_t) len; } static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { Py_ssize_t len = __Pyx_ssize_strlen(c_str); if (unlikely(len < 0)) return NULL; return __Pyx_PyUnicode_FromStringAndSize(c_str, len); } static CYTHON_INLINE PyObject* __Pyx_PyByteArray_FromString(const char* c_str) { Py_ssize_t len = __Pyx_ssize_strlen(c_str); if (unlikely(len < 0)) return NULL; return PyByteArray_FromStringAndSize(c_str, len); } static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) { Py_ssize_t ignore; return __Pyx_PyObject_AsStringAndSize(o, &ignore); } #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT #if !CYTHON_PEP393_ENABLED static const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) { char* defenc_c; PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); if (!defenc) return NULL; defenc_c = PyBytes_AS_STRING(defenc); #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII { char* end = defenc_c + PyBytes_GET_SIZE(defenc); char* c; for (c = defenc_c; c < end; c++) { if ((unsigned char) (*c) >= 128) { PyUnicode_AsASCIIString(o); return NULL; } } } #endif *length = PyBytes_GET_SIZE(defenc); return defenc_c; } #else static CYTHON_INLINE const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) { if (unlikely(__Pyx_PyUnicode_READY(o) == -1)) return NULL; #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII if (likely(PyUnicode_IS_ASCII(o))) { *length = PyUnicode_GET_LENGTH(o); return PyUnicode_AsUTF8(o); } else { PyUnicode_AsASCIIString(o); return NULL; } #else return PyUnicode_AsUTF8AndSize(o, length); #endif } #endif #endif static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT if ( #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII __Pyx_sys_getdefaultencoding_not_ascii && #endif PyUnicode_Check(o)) { return __Pyx_PyUnicode_AsStringAndSize(o, length); } else #endif #if (!CYTHON_COMPILING_IN_PYPY && !CYTHON_COMPILING_IN_LIMITED_API) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE)) if (PyByteArray_Check(o)) { *length = PyByteArray_GET_SIZE(o); return PyByteArray_AS_STRING(o); } else #endif { char* result; int r = PyBytes_AsStringAndSize(o, &result, length); if (unlikely(r < 0)) { return NULL; } else { return result; } } } static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { int is_true = x == Py_True; if (is_true | (x == Py_False) | (x == Py_None)) return is_true; else return PyObject_IsTrue(x); } static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject* x) { int retval; if (unlikely(!x)) return -1; retval = __Pyx_PyObject_IsTrue(x); Py_DECREF(x); return retval; } static PyObject* __Pyx_PyNumber_IntOrLongWrongResultType(PyObject* result, const char* type_name) { __Pyx_TypeName result_type_name = __Pyx_PyType_GetName(Py_TYPE(result)); #if PY_MAJOR_VERSION >= 3 if (PyLong_Check(result)) { if (PyErr_WarnFormat(PyExc_DeprecationWarning, 1, "__int__ returned non-int (type " __Pyx_FMT_TYPENAME "). " "The ability to return an instance of a strict subclass of int is deprecated, " "and may be removed in a future version of Python.", result_type_name)) { __Pyx_DECREF_TypeName(result_type_name); Py_DECREF(result); return NULL; } __Pyx_DECREF_TypeName(result_type_name); return result; } #endif PyErr_Format(PyExc_TypeError, "__%.4s__ returned non-%.4s (type " __Pyx_FMT_TYPENAME ")", type_name, type_name, result_type_name); __Pyx_DECREF_TypeName(result_type_name); Py_DECREF(result); return NULL; } static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) { #if CYTHON_USE_TYPE_SLOTS PyNumberMethods *m; #endif const char *name = NULL; PyObject *res = NULL; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x) || PyLong_Check(x))) #else if (likely(PyLong_Check(x))) #endif return __Pyx_NewRef(x); #if CYTHON_USE_TYPE_SLOTS m = Py_TYPE(x)->tp_as_number; #if PY_MAJOR_VERSION < 3 if (m && m->nb_int) { name = "int"; res = m->nb_int(x); } else if (m && m->nb_long) { name = "long"; res = m->nb_long(x); } #else if (likely(m && m->nb_int)) { name = "int"; res = m->nb_int(x); } #endif #else if (!PyBytes_CheckExact(x) && !PyUnicode_CheckExact(x)) { res = PyNumber_Int(x); } #endif if (likely(res)) { #if PY_MAJOR_VERSION < 3 if (unlikely(!PyInt_Check(res) && !PyLong_Check(res))) { #else if (unlikely(!PyLong_CheckExact(res))) { #endif return __Pyx_PyNumber_IntOrLongWrongResultType(res, name); } } else if (!PyErr_Occurred()) { PyErr_SetString(PyExc_TypeError, "an integer is required"); } return res; } static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { Py_ssize_t ival; PyObject *x; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_CheckExact(b))) { if (sizeof(Py_ssize_t) >= sizeof(long)) return PyInt_AS_LONG(b); else return PyInt_AsSsize_t(b); } #endif if (likely(PyLong_CheckExact(b))) { #if CYTHON_USE_PYLONG_INTERNALS if (likely(__Pyx_PyLong_IsCompact(b))) { return __Pyx_PyLong_CompactValue(b); } else { const digit* digits = __Pyx_PyLong_Digits(b); const Py_ssize_t size = __Pyx_PyLong_SignedDigitCount(b); switch (size) { case 2: if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); } break; case -2: if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); } break; case 3: if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); } break; case -3: if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); } break; case 4: if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); } break; case -4: if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); } break; } } #endif return PyLong_AsSsize_t(b); } x = PyNumber_Index(b); if (!x) return -1; ival = PyInt_AsSsize_t(x); Py_DECREF(x); return ival; } static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject* o) { if (sizeof(Py_hash_t) == sizeof(Py_ssize_t)) { return (Py_hash_t) __Pyx_PyIndex_AsSsize_t(o); #if PY_MAJOR_VERSION < 3 } else if (likely(PyInt_CheckExact(o))) { return PyInt_AS_LONG(o); #endif } else { Py_ssize_t ival; PyObject *x; x = PyNumber_Index(o); if (!x) return -1; ival = PyInt_AsLong(x); Py_DECREF(x); return ival; } } static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b) { return b ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False); } static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { return PyInt_FromSize_t(ival); } /* #### Code section: utility_code_pragmas_end ### */ #ifdef _MSC_VER #pragma warning( pop ) #endif /* #### Code section: end ### */ #endif /* Py_PYTHON_H */